Wall clock time and date at job start Mon Mar 30 2020 19:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 N 1.46498 * 109.46853 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00089 * 275.30596 * 4 3 2 6 6 H 1.07999 * 119.99914 * 37.57535 * 5 4 3 7 7 C 1.38810 * 120.00395 * 217.58231 * 5 4 3 8 8 N 1.31621 * 120.00184 * 21.42775 * 7 5 4 9 9 Si 1.86806 * 120.00259 * 201.43284 * 7 5 4 10 10 H 1.48500 * 109.46711 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46819 * 119.99492 * 9 7 5 12 12 H 1.48494 * 109.46896 * 239.99780 * 9 7 5 13 13 C 1.46500 * 120.00045 * 95.30963 * 4 3 2 14 14 C 1.52996 * 109.47139 * 269.99568 * 13 4 3 15 15 N 1.46500 * 109.47139 * 180.02562 * 14 13 4 16 16 C 1.34778 * 120.00243 * 180.02562 * 15 14 13 17 17 O 1.21690 * 119.99814 * 0.02562 * 16 15 14 18 18 C 1.46719 * 120.00336 * 180.02562 * 16 15 14 19 19 C 1.36344 * 126.64458 * 180.02562 * 18 16 15 20 20 N 1.33693 * 107.45004 * 179.73725 * 19 18 16 21 21 C 1.30615 * 108.99785 * 0.24235 * 20 19 18 22 22 O 1.33668 * 109.15285 * 359.97438 * 21 20 19 23 23 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46846 * 299.99988 * 1 2 3 25 25 H 1.08993 * 109.46868 * 60.00102 * 1 2 3 26 26 H 1.09002 * 109.47325 * 239.99802 * 2 1 3 27 27 H 1.09000 * 109.47251 * 119.99932 * 2 1 3 28 28 H 1.09000 * 109.47241 * 60.00254 * 3 2 1 29 29 H 1.09000 * 109.46993 * 300.00091 * 3 2 1 30 30 H 0.96996 * 120.00229 * 180.02562 * 8 7 5 31 31 H 1.09013 * 109.46835 * 149.99642 * 13 4 3 32 32 H 1.08996 * 109.47241 * 30.00025 * 13 4 3 33 33 H 1.08999 * 109.47194 * 60.00344 * 14 13 4 34 34 H 1.09004 * 109.47420 * 300.00035 * 14 13 4 35 35 H 0.97001 * 120.00182 * 0.02562 * 15 14 13 36 36 H 1.07998 * 126.27083 * 0.02562 * 19 18 16 37 37 H 1.07995 * 125.42242 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3326 1.1799 6 1 3.8185 0.6871 1.9619 7 6 5.3624 2.0510 1.3716 8 7 5.6026 3.1238 0.6479 9 14 6.5991 1.4951 2.6566 10 1 6.0964 0.2709 3.3302 11 1 7.8977 1.2010 1.9990 12 1 6.7859 2.5717 3.6621 13 6 4.2370 1.5600 -1.2642 14 6 4.4918 0.1647 -1.8377 15 7 5.2243 0.2822 -3.1010 16 6 5.5606 -0.8259 -3.7906 17 8 5.2554 -1.9240 -3.3641 18 6 6.2947 -0.7082 -5.0555 19 6 6.7007 -1.7321 -5.8590 20 7 7.3278 -1.1930 -6.9094 21 6 7.3285 0.1070 -6.7829 22 8 6.7020 0.4377 -5.6494 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.4218 3.6256 0.7816 31 1 5.1896 2.0596 -1.0871 32 1 3.6477 2.1420 -1.9727 33 1 3.5393 -0.3349 -2.0148 34 1 5.0812 -0.4174 -1.1292 35 1 5.4673 1.1575 -3.4411 36 1 6.5404 -2.7854 -5.6820 37 1 7.7650 0.8038 -7.4831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713548708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:02 Heat of formation + Delta-G solvation = 0.559978 kcal Electronic energy + Delta-G solvation = -20137.388612 eV Core-core repulsion = 16917.168871 eV Total energy + Delta-G solvation = -3220.219741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.52755 -39.26862 -36.56332 -35.17006 -34.29483 -32.92397 -31.08585 -30.50421 -28.19359 -25.60847 -24.49938 -23.14450 -22.68168 -21.05965 -20.65649 -20.13784 -18.49743 -17.03567 -16.92402 -16.51081 -15.66602 -15.19452 -14.70570 -14.45853 -14.33077 -14.01120 -13.82070 -13.46007 -13.02079 -12.84873 -12.70061 -11.66272 -11.61949 -11.57978 -11.24217 -11.03655 -10.98899 -10.77958 -10.51030 -10.41858 -10.22130 -10.06864 -9.94960 -9.68971 -9.27892 -8.70040 -8.53155 -6.68282 -5.89046 -3.48040 0.76573 2.32592 2.37458 3.19324 3.29884 3.38915 3.40754 3.44298 3.99621 4.41950 4.82451 4.85225 5.22027 5.36664 5.42177 5.45853 5.63661 5.72555 5.95377 6.03046 6.03923 6.12577 6.24615 6.35921 6.46798 6.57533 6.61174 6.65791 6.90715 6.94267 7.13969 7.31293 7.46181 7.69737 7.76110 8.22873 8.42646 9.08770 9.70683 10.28296 11.11141 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.005203 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.728200 B = 5380.252360 C = 6481.016452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.094 3.906 15 N -0.703 5.703 16 C 0.597 3.403 17 O -0.522 6.522 18 C -0.096 4.096 19 C 0.041 3.959 20 N -0.496 5.496 21 C 0.192 3.808 22 O -0.190 6.190 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.196 0.804 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -2.801 -11.868 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.009 3.991 14 C -0.030 4.030 15 N -0.352 5.352 16 C 0.381 3.619 17 O -0.400 6.400 18 C -0.152 4.152 19 C -0.102 4.102 20 N -0.225 5.225 21 C -0.033 4.033 22 O -0.075 6.075 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.213 0.787 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.167 -3.656 -11.960 12.507 hybrid contribution 0.674 0.493 0.844 1.187 sum 0.506 -3.164 -11.116 11.568 Atomic orbital electron populations 1.21720 0.97299 1.00438 1.01013 1.22189 0.93859 1.00889 1.01593 1.20952 0.84954 0.93016 0.98992 1.43609 0.99485 1.84763 1.02005 1.19070 1.05631 1.20465 0.93946 0.91920 1.25191 1.00830 0.94510 0.98111 1.69998 1.25618 1.14802 1.42496 0.86342 0.81462 0.78512 0.81202 1.19900 1.21388 1.21530 1.21069 1.00534 0.90953 0.86564 1.22647 0.94955 1.03378 0.82047 1.46109 1.56505 1.08222 1.24384 1.16448 0.79110 0.85471 0.80894 1.90889 1.55177 1.26195 1.67763 1.23533 1.08116 0.84204 0.99352 1.23575 0.96137 1.01156 0.89297 1.70425 1.19814 1.07417 1.24810 1.28374 0.94916 0.93309 0.86751 1.84526 1.56083 1.34806 1.32068 0.93777 0.93189 0.93466 0.92947 0.92299 0.93497 0.94722 0.93514 0.88278 0.95121 0.92407 0.91184 0.76279 0.78698 0.72944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.15 -2.59 6.23 -26.73 -0.17 -2.76 16 3 C 0.15 2.98 5.72 -4.04 -0.02 2.96 16 4 N -0.58 -13.65 2.43 -173.24 -0.42 -14.07 16 5 C -0.26 -6.86 9.45 -15.06 -0.14 -7.00 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.34 11.47 55.49 0.64 -23.70 16 9 Si 0.90 21.07 29.61 -169.99 -5.03 16.04 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.14 2.95 5.45 -4.04 -0.02 2.92 16 14 C 0.09 1.85 6.00 -4.04 -0.02 1.83 16 15 N -0.70 -11.74 5.55 -61.61 -0.34 -12.08 16 16 C 0.60 10.08 7.79 -12.83 -0.10 9.98 16 17 O -0.52 -10.33 16.89 5.20 0.09 -10.24 16 18 C -0.10 -1.36 7.18 -36.84 -0.26 -1.62 16 19 C 0.04 0.53 11.66 -17.42 -0.20 0.33 16 20 N -0.50 -5.98 11.26 -14.67 -0.17 -6.15 16 21 C 0.19 1.78 13.21 52.24 0.69 2.47 16 22 O -0.19 -2.25 10.57 4.42 0.05 -2.20 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.95 6.64 -51.93 -0.34 0.61 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 30 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.10 2.42 5.52 -51.92 -0.29 2.13 16 32 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 33 H 0.06 1.14 6.64 -51.93 -0.34 0.79 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.40 5.92 8.27 -40.82 -0.34 5.58 16 36 H 0.20 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.25 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -30.79 320.55 -5.39 -36.18 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.06 Total: 3.76 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 0.03 Total: 7.63 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.29 Total: -56.00 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.13 Total: -12.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.79 -5.39 -36.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713548708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds