Wall clock time and date at job start Mon Mar 30 2020 19:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00592 * 2 1 4 4 H 1.07994 * 120.00615 * 203.04937 * 3 2 1 5 5 C 1.38819 * 119.99211 * 23.04577 * 3 2 1 6 6 N 1.31617 * 120.00297 * 12.93021 * 5 3 2 7 7 Si 1.86806 * 119.99438 * 192.92923 * 5 3 2 8 8 H 1.48499 * 109.46870 * 90.00209 * 7 5 3 9 9 H 1.48499 * 109.46786 * 210.00339 * 7 5 3 10 10 H 1.48492 * 109.47192 * 330.00172 * 7 5 3 11 11 C 1.46507 * 119.99993 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47142 * 89.99631 * 11 2 1 13 13 C 1.53003 * 109.47229 * 180.02562 * 12 11 2 14 14 N 1.46493 * 109.47313 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99986 * 180.02562 * 14 13 12 16 16 O 1.21557 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.47808 * 119.99910 * 180.27386 * 15 14 13 18 18 C 1.40925 * 127.23349 * 179.72383 * 17 15 14 19 19 N 1.31137 * 105.77279 * 180.02562 * 18 17 15 20 20 N 1.28515 * 109.05571 * 359.97438 * 19 18 17 21 21 C 1.46506 * 124.43700 * 180.02562 * 20 19 18 22 22 N 1.28585 * 111.11936 * 359.72531 * 20 19 18 23 23 H 1.08998 * 109.46943 * 275.12432 * 1 2 3 24 24 H 1.09004 * 109.46937 * 35.12306 * 1 2 3 25 25 H 1.08994 * 109.47151 * 155.12099 * 1 2 3 26 26 H 0.96999 * 119.99582 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46770 * 329.99821 * 11 2 1 28 28 H 1.08996 * 109.47304 * 210.00099 * 11 2 1 29 29 H 1.09006 * 109.46999 * 60.00626 * 12 11 2 30 30 H 1.08996 * 109.47403 * 300.00407 * 12 11 2 31 31 H 1.08997 * 109.46839 * 60.00094 * 13 12 11 32 32 H 1.09004 * 109.46955 * 300.00103 * 13 12 11 33 33 H 0.96996 * 120.00403 * 0.02562 * 14 13 12 34 34 H 1.08001 * 127.11414 * 359.97438 * 18 17 15 35 35 H 1.08995 * 109.47196 * 90.02716 * 21 20 19 36 36 H 1.09008 * 109.46921 * 210.02517 * 21 20 19 37 37 H 1.09003 * 109.47369 * 330.02013 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4707 6 7 0.4118 2.2597 1.1459 7 14 2.3161 4.0073 0.1456 8 1 1.7989 4.5533 -1.1349 9 1 1.9761 4.9363 1.2532 10 1 3.7910 3.8576 0.0602 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2169 -3.0352 -1.4438 14 7 3.4615 -3.4572 -2.8251 15 6 4.1232 -4.6052 -3.0719 16 8 4.5174 -5.2900 -2.1482 17 6 4.3753 -5.0279 -4.4656 18 6 5.0511 -6.1873 -4.8960 19 7 5.0330 -6.1446 -6.2066 20 7 4.4167 -5.0816 -6.5833 21 6 4.2015 -4.7002 -7.9814 22 7 4.0084 -4.3999 -5.5724 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3633 -0.9322 -0.4323 26 1 -0.0148 3.0662 1.4750 27 1 1.6084 -2.0286 0.5129 28 1 3.1499 -1.1387 0.5133 29 1 3.0416 -0.9500 -1.9567 30 1 1.5000 -1.8399 -1.9571 31 1 2.6274 -3.7948 -0.9304 32 1 4.1693 -2.9055 -0.9298 33 1 3.1473 -2.9106 -3.5622 34 1 5.4932 -6.9523 -4.2750 35 1 3.2595 -5.1217 -8.3321 36 1 4.1650 -3.6136 -8.0600 37 1 5.0199 -5.0814 -8.5921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316856473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:35 Heat of formation + Delta-G solvation = 94.676469 kcal Electronic energy + Delta-G solvation = -19401.391606 eV Core-core repulsion = 16217.545813 eV Total energy + Delta-G solvation = -3183.845792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.91581 -39.46300 -36.27024 -34.79539 -34.11926 -33.03009 -31.90528 -30.00180 -28.35569 -26.03217 -25.58355 -23.87529 -22.37065 -21.87920 -20.75166 -20.00947 -18.00737 -17.29688 -17.05114 -16.69990 -15.80580 -15.42844 -15.08000 -14.80226 -14.18666 -14.01032 -13.47678 -13.36711 -13.26658 -12.90380 -12.70101 -12.17861 -11.71084 -11.42821 -11.30984 -11.01763 -10.79917 -10.78887 -10.72521 -10.47120 -10.27365 -10.14365 -9.83869 -9.78442 -9.73128 -8.99902 -8.53052 -6.72379 -5.70179 -3.17373 1.07995 1.69698 1.85052 3.08340 3.17405 3.39205 3.45410 3.46922 3.67562 4.50379 4.52528 4.55412 4.68658 4.82886 4.89858 5.24204 5.39808 5.45018 5.46642 5.69312 5.82600 5.90823 6.11329 6.16072 6.20507 6.43313 6.52916 6.76798 6.78488 6.96145 7.39444 7.44195 7.75395 7.82722 7.84148 8.11504 8.42401 9.26193 9.89791 10.38815 11.34601 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003172 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.899214 B = 8825.288775 C = 9319.710842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.156 3.844 12 C -0.151 4.151 13 C 0.120 3.880 14 N -0.709 5.709 15 C 0.605 3.395 16 O -0.531 6.531 17 C -0.043 4.043 18 C 0.035 3.965 19 N -0.293 5.293 20 N -0.145 5.145 21 C 0.103 3.897 22 N -0.250 5.250 23 H 0.031 0.969 24 H 0.039 0.961 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.209 0.791 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -14.534 -16.610 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.004 4.004 14 N -0.360 5.360 15 C 0.387 3.613 16 O -0.405 6.405 17 C -0.206 4.206 18 C -0.149 4.149 19 N -0.133 5.133 20 N -0.048 5.048 21 C -0.036 4.036 22 N -0.098 5.098 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.016 0.984 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.226 0.774 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.210 -14.498 -17.126 23.282 hybrid contribution 0.281 1.021 0.169 1.072 sum 6.491 -13.478 -16.957 22.612 Atomic orbital electron populations 1.20792 0.82680 0.95321 0.99480 1.43895 1.01853 1.00690 1.86133 1.19206 0.98283 0.85650 1.35385 0.91390 1.25036 0.97930 0.98550 0.98214 1.70072 1.19492 1.27143 1.38594 0.86252 0.78772 0.84160 0.77348 1.21558 1.21760 1.20471 1.20595 0.96405 0.88514 0.91757 1.22549 0.99543 0.94122 1.02994 1.21558 1.00741 0.97222 0.80855 1.46008 1.56637 1.22843 1.10474 1.16646 0.78474 0.81427 0.84742 1.90816 1.51841 1.54308 1.43582 1.23182 1.06383 0.97361 0.93722 1.24865 1.01155 0.99240 0.89639 1.74017 1.16098 1.08106 1.15063 1.48051 1.35978 1.12574 1.08192 1.22266 1.04736 1.03732 0.72865 1.74397 1.18387 1.22448 0.94599 0.95066 0.94192 0.98382 0.93777 0.94331 0.93196 0.91459 0.92138 0.91335 0.91188 0.75836 0.77446 0.88804 0.87471 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.18 2.92 -181.12 -0.53 -15.70 16 3 C -0.26 -7.03 9.65 -15.06 -0.15 -7.18 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.69 10.71 55.49 0.59 -26.10 16 7 Si 0.90 21.89 29.57 -169.99 -5.03 16.87 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 C 0.16 3.12 5.64 -4.04 -0.02 3.10 16 12 C -0.15 -2.50 5.65 -26.73 -0.15 -2.65 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 14 N -0.71 -9.53 5.55 -61.27 -0.34 -9.87 16 15 C 0.60 8.63 7.83 -12.35 -0.10 8.54 16 16 O -0.53 -8.92 16.95 5.32 0.09 -8.83 16 17 C -0.04 -0.55 7.21 -82.68 -0.60 -1.14 16 18 C 0.03 0.38 12.04 -16.83 -0.20 0.18 16 19 N -0.29 -3.14 12.01 30.90 0.37 -2.77 16 20 N -0.15 -1.40 4.34 -16.63 -0.07 -1.48 16 21 C 0.10 0.44 11.55 59.85 0.69 1.13 16 22 N -0.25 -2.89 11.84 33.43 0.40 -2.49 16 23 H 0.03 0.84 7.34 -51.93 -0.38 0.45 16 24 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 25 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.41 4.94 8.24 -40.82 -0.34 4.61 16 34 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -33.93 322.85 -5.03 -38.96 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.28 Total: -1.61 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.10 Total: 8.16 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.42 Total: -58.41 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.93 -5.03 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316856473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.637 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds