Wall clock time and date at job start Mon Mar 30 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47034 * 2 1 4 4 C 1.36934 * 119.99703 * 275.30705 * 3 2 1 5 5 H 1.08001 * 120.00141 * 37.57728 * 4 3 2 6 6 C 1.38812 * 120.00087 * 217.57535 * 4 3 2 7 7 N 1.31619 * 119.99946 * 21.43421 * 6 4 3 8 8 Si 1.86799 * 120.00136 * 201.43503 * 6 4 3 9 9 H 1.48497 * 109.47034 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47293 * 120.00308 * 8 6 4 11 11 H 1.48505 * 109.46975 * 240.00293 * 8 6 4 12 12 C 1.46497 * 120.00017 * 95.31055 * 3 2 1 13 13 C 1.53001 * 109.47065 * 269.99573 * 12 3 2 14 14 N 1.46500 * 109.47427 * 179.97438 * 13 12 3 15 15 C 1.34772 * 120.00255 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47085 * 180.02562 * 17 15 14 19 19 N 1.33245 * 125.52815 * 90.00163 * 18 17 15 20 20 C 1.30830 * 109.83035 * 179.97438 * 19 18 17 21 21 N 1.34429 * 108.07695 * 0.02562 * 20 19 18 22 22 H 0.97002 * 126.81995 * 179.73741 * 21 20 19 23 23 N 1.30713 * 125.52800 * 269.99740 * 18 17 15 24 24 H 1.09006 * 109.46743 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47119 * 300.00150 * 1 2 3 26 26 H 1.08992 * 109.47040 * 60.00045 * 1 2 3 27 27 H 1.08999 * 109.47065 * 239.99305 * 2 1 3 28 28 H 1.09006 * 109.47021 * 119.99972 * 2 1 3 29 29 H 0.97002 * 120.00314 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46988 * 150.00460 * 12 3 2 31 31 H 1.08993 * 109.47424 * 29.99521 * 12 3 2 32 32 H 1.09009 * 109.46815 * 60.00121 * 13 12 3 33 33 H 1.09000 * 109.47338 * 300.00808 * 13 12 3 34 34 H 0.97004 * 119.99729 * 0.02562 * 14 13 12 35 35 H 1.08993 * 109.47121 * 60.00340 * 17 15 14 36 36 H 1.08993 * 109.47114 * 299.99921 * 17 15 14 37 37 H 1.07997 * 125.95901 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9277 -1.9628 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7981 -0.6491 8 14 3.0992 4.2796 -2.6584 9 1 1.7776 4.2133 -3.3322 10 1 3.2550 5.6023 -2.0016 11 1 4.1766 4.0963 -3.6640 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 7 1.4972 3.3893 3.1001 15 6 0.5649 4.0768 3.7889 16 8 -0.5679 4.1560 3.3629 17 6 0.9298 4.7469 5.0884 18 6 -0.2823 5.4418 5.6530 19 7 -1.1708 4.8967 6.4830 20 6 -2.0969 5.7721 6.7791 21 7 -1.8128 6.9152 6.1312 22 1 -2.3236 7.7394 6.1552 23 7 -0.6326 6.6771 5.4081 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.0492 3.4027 -0.7835 30 1 3.1616 2.7642 1.0859 31 1 2.7254 1.2834 1.9721 32 1 0.3541 2.0068 2.0138 33 1 0.7903 3.4876 1.1276 34 1 2.4034 3.3262 3.4406 35 1 1.7185 5.4780 4.9112 36 1 1.2817 3.9975 5.7973 37 1 -2.9425 5.6052 7.4298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663443266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:37 Heat of formation + Delta-G solvation = 66.017018 kcal Electronic energy + Delta-G solvation = -19972.446281 eV Core-core repulsion = 16787.357722 eV Total energy + Delta-G solvation = -3185.088559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18878 -39.15901 -36.28967 -34.02751 -33.35062 -31.86967 -31.78256 -30.02007 -28.89224 -27.13840 -24.22107 -22.96943 -22.05393 -20.90037 -20.33894 -19.69476 -18.45889 -17.11245 -16.38653 -15.71199 -15.42030 -15.23822 -14.94600 -14.64448 -13.90962 -13.74690 -13.27986 -13.22738 -12.85341 -12.36428 -12.24901 -12.13946 -11.80895 -11.48054 -11.10778 -10.76703 -10.61291 -10.46980 -10.26881 -10.14953 -10.06422 -9.91721 -9.83624 -9.77887 -9.38896 -8.55109 -8.41729 -6.60916 -5.82285 -3.40858 1.50859 2.53352 2.73707 2.99420 3.35368 3.44586 3.48468 3.66503 4.03756 4.48234 4.53067 4.79028 5.13524 5.30013 5.34122 5.44908 5.57361 6.02208 6.08250 6.15295 6.20384 6.27543 6.41039 6.45778 6.54228 6.71757 6.89042 6.91675 6.94006 7.05911 7.19248 7.56714 7.82069 7.95588 7.96982 8.49469 8.62285 9.16277 9.78137 10.36145 11.17714 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.004260 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.589880 B = 6571.581010 C = 7214.505191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.099 3.901 14 N -0.718 5.718 15 C 0.515 3.485 16 O -0.540 6.540 17 C -0.052 4.052 18 C 0.254 3.746 19 N -0.534 5.534 20 C 0.260 3.740 21 N -0.486 5.486 22 H 0.440 0.560 23 N -0.304 5.304 24 H 0.036 0.964 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.254 0.746 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 4.740 15.419 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.370 5.370 15 C 0.299 3.701 16 O -0.417 6.417 17 C -0.095 4.095 18 C -0.029 4.029 19 N -0.262 5.262 20 C -0.040 4.040 21 N -0.204 5.204 22 H 0.286 0.714 23 N -0.133 5.133 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.581 4.939 14.708 17.268 hybrid contribution -0.324 1.322 -0.291 1.392 sum -7.905 6.262 14.417 17.594 Atomic orbital electron populations 1.22392 0.99941 0.99067 1.01403 1.20878 0.91744 0.86972 0.98888 1.43623 1.76045 1.08314 1.02116 1.19064 1.04754 1.21207 0.93969 0.92077 1.25169 0.94155 1.01195 0.98109 1.70001 1.03169 1.37279 1.42501 0.86350 0.77759 0.82230 0.81217 1.20000 1.21360 1.21581 1.21059 0.94558 0.96964 0.86400 1.22458 1.01074 0.96495 0.82639 1.46048 1.13019 1.53294 1.24599 1.20095 0.85646 0.79188 0.85201 1.90710 1.20567 1.60765 1.69690 1.19954 0.93025 1.00403 0.96092 1.23360 0.96550 0.88863 0.94176 1.70351 1.04944 1.32162 1.18780 1.26042 0.99152 0.82546 0.96237 1.48074 1.21180 1.14524 1.36603 0.71440 1.78003 0.99380 1.18604 1.17327 0.94457 0.93653 0.93149 0.93599 0.94693 0.93572 0.88384 0.95222 0.93013 0.91855 0.76791 0.86527 0.86117 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.21 37.16 0.38 -2.81 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.22 2.43 -173.24 -0.42 -14.65 16 4 C -0.26 -7.05 9.45 -15.06 -0.14 -7.20 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.75 11.47 55.49 0.64 -24.12 16 8 Si 0.90 21.56 29.60 -169.99 -5.03 16.53 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.14 3.07 5.45 -4.04 -0.02 3.05 16 13 C 0.10 2.03 6.00 -4.04 -0.02 2.01 16 14 N -0.72 -12.04 5.56 -60.29 -0.33 -12.37 16 15 C 0.52 8.92 7.82 -10.99 -0.09 8.83 16 16 O -0.54 -11.85 16.03 5.55 0.09 -11.76 16 17 C -0.05 -0.67 6.33 -29.04 -0.18 -0.86 16 18 C 0.25 3.76 6.63 -156.85 -1.04 2.72 16 19 N -0.53 -7.42 11.19 -11.98 -0.13 -7.56 16 20 C 0.26 2.47 13.13 -90.66 -1.19 1.28 16 21 N -0.49 -4.80 7.45 29.53 0.22 -4.58 16 22 H 0.44 2.50 8.96 -182.33 -1.63 0.87 16 23 N -0.30 -4.43 12.80 32.42 0.41 -4.02 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.87 6.64 -51.93 -0.34 0.53 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.10 2.44 5.52 -51.93 -0.29 2.15 16 31 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 32 H 0.05 1.10 6.64 -51.92 -0.34 0.76 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.40 5.40 8.47 -40.82 -0.35 5.06 16 35 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -36.27 319.27 -8.45 -44.72 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.28 Total: 2.72 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -2.42 Total: 10.28 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: 0.38 Total: -67.29 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.27 -8.45 -44.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663443266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.738 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds