Wall clock time and date at job start Mon Mar 30 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47295 * 2 1 4 4 C 1.52998 * 109.46881 * 239.99921 * 2 1 3 5 5 C 1.50707 * 109.46787 * 120.00221 * 2 1 3 6 6 O 1.20825 * 120.00020 * 359.97438 * 5 2 1 7 7 C 1.48027 * 119.99641 * 179.97438 * 5 2 1 8 8 O 1.21601 * 120.00209 * 6.98257 * 7 5 2 9 9 N 1.34776 * 119.99923 * 186.99072 * 7 5 2 10 10 C 1.35084 * 120.00159 * 185.01149 * 9 7 5 11 11 H 1.08006 * 120.00378 * 135.42167 * 10 9 7 12 12 C 1.40022 * 120.00231 * 315.42287 * 10 9 7 13 13 N 1.30758 * 119.99634 * 350.46792 * 12 10 9 14 14 Si 1.86801 * 120.00361 * 170.46378 * 12 10 9 15 15 H 1.48496 * 109.46733 * 60.00097 * 14 12 10 16 16 H 1.48498 * 109.47070 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47016 * 300.00350 * 14 12 10 18 18 C 1.46506 * 120.00009 * 4.73053 * 9 7 5 19 19 C 1.54261 * 110.03407 * 182.56894 * 18 9 7 20 20 C 1.54959 * 104.16164 * 217.13687 * 19 18 9 21 21 C 1.54892 * 102.77548 * 37.89214 * 20 19 18 22 22 C 1.53876 * 110.02898 * 65.35595 * 18 9 7 23 23 H 1.09003 * 109.47170 * 300.00490 * 1 2 3 24 24 H 1.09005 * 109.47110 * 60.00077 * 1 2 3 25 25 H 1.09001 * 109.47657 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47289 * 299.99850 * 3 2 1 28 28 H 1.08995 * 109.47192 * 59.99863 * 3 2 1 29 29 H 1.08998 * 109.47243 * 300.00135 * 4 2 1 30 30 H 1.08997 * 109.47217 * 60.00448 * 4 2 1 31 31 H 1.08998 * 109.47194 * 180.02562 * 4 2 1 32 32 H 0.97000 * 119.99919 * 185.02417 * 13 12 10 33 33 H 1.08999 * 110.01672 * 303.96958 * 18 9 7 34 34 H 1.09005 * 110.48554 * 335.78976 * 19 18 9 35 35 H 1.09006 * 110.48166 * 98.42845 * 19 18 9 36 36 H 1.08992 * 110.72321 * 279.57443 * 20 19 18 37 37 H 1.08997 * 110.92116 * 156.29567 * 20 19 18 38 38 H 1.09003 * 110.48193 * 203.40100 * 21 20 19 39 39 H 1.08998 * 110.60043 * 80.81873 * 21 20 19 40 40 H 1.09005 * 110.02893 * 238.57451 * 22 18 9 41 41 H 1.09003 * 110.03515 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2471 -1.1693 2.0260 7 6 3.4876 -0.8462 1.4645 8 8 4.2765 -0.2775 0.7345 9 7 3.9384 -1.6004 2.4865 10 6 5.2600 -1.6435 2.7625 11 1 5.6011 -1.5684 3.7845 12 6 6.1880 -1.7857 1.7235 13 7 5.7772 -2.0629 0.5135 14 14 8.0126 -1.5793 2.0661 15 1 8.4439 -2.5828 3.0721 16 1 8.7778 -1.7775 0.8089 17 1 8.2666 -0.2131 2.5894 18 6 2.9944 -2.3686 3.3020 19 6 3.7451 -3.0922 4.4388 20 6 3.0165 -4.4537 4.5678 21 6 2.6978 -4.8125 3.0951 22 6 2.3284 -3.4618 2.4481 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1299 -0.7217 -1.2491 32 1 6.4223 -2.2333 -0.1905 33 1 2.2356 -1.7059 3.7182 34 1 4.7907 -3.2431 4.1699 35 1 3.6669 -2.5273 5.3677 36 1 2.0991 -4.3469 5.1466 37 1 3.6688 -5.2034 5.0155 38 1 1.8558 -5.5029 3.0443 39 1 3.5725 -5.2427 2.6072 40 1 1.2463 -3.3300 2.4506 41 1 2.7072 -3.4205 1.4269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737638139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:42 Heat of formation + Delta-G solvation = -60.548234 kcal Electronic energy + Delta-G solvation = -22519.512112 eV Core-core repulsion = 19400.182864 eV Total energy + Delta-G solvation = -3119.329248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96894 -37.85623 -36.44970 -35.12842 -33.27582 -31.56392 -28.18245 -26.98314 -26.77386 -26.74272 -25.63329 -23.65422 -20.93180 -19.78628 -19.39034 -17.85603 -16.69566 -15.96574 -15.40398 -15.05343 -14.68021 -14.36155 -14.05403 -13.62891 -13.30955 -13.14956 -12.94182 -12.60904 -12.14729 -11.82513 -11.68700 -11.60205 -11.39307 -11.23637 -11.01938 -10.87374 -10.71841 -10.55197 -10.49806 -10.46396 -10.41244 -10.31638 -10.21075 -9.92219 -9.85191 -9.34022 -8.81221 -7.60448 -7.05875 -6.14655 -3.91224 2.25534 3.26299 3.31337 3.33427 4.15204 4.52606 4.70608 5.11134 5.21364 5.30461 5.33576 5.40305 5.49280 5.55817 5.79209 5.94493 6.06654 6.10790 6.14529 6.18395 6.22996 6.25619 6.28107 6.30892 6.43378 6.45470 6.45711 6.50399 6.51110 6.57915 6.74373 6.87191 6.95189 6.98835 7.06233 7.22814 7.50582 7.95351 8.24315 8.95925 9.16245 9.58343 10.28213 10.87361 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.010198 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.769864 B = 2744.866818 C = 4045.362336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.135 4.135 5 C 0.353 3.647 6 O -0.458 6.458 7 C 0.403 3.597 8 O -0.505 6.505 9 N -0.406 5.406 10 C -0.336 4.336 11 H 0.085 0.915 12 C 0.062 3.938 13 N -0.796 5.796 14 Si 0.912 3.088 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.132 3.868 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.123 4.123 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -0.715 1.142 6.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 C -0.196 4.196 4 C -0.192 4.192 5 C 0.227 3.773 6 O -0.331 6.331 7 C 0.191 3.809 8 O -0.384 6.384 9 N -0.128 5.128 10 C -0.464 4.464 11 H 0.102 0.898 12 C -0.152 4.152 13 N -0.430 5.430 14 Si 0.739 3.261 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.028 3.972 19 C -0.168 4.168 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.161 4.161 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.593 -0.625 0.973 6.694 hybrid contribution 0.776 -0.027 -0.010 0.777 sum -5.817 -0.652 0.963 5.932 Atomic orbital electron populations 1.21725 0.93912 1.01911 1.01244 1.20874 0.95786 0.97495 0.95699 1.21851 1.04225 0.92814 1.00664 1.21775 1.04197 0.98749 0.94494 1.25035 0.91372 0.75621 0.85264 1.90249 1.60077 1.38801 1.44009 1.19719 0.87986 0.85901 0.87344 1.90573 1.55767 1.46789 1.45240 1.42939 1.05785 1.36645 1.27447 1.18890 0.80678 1.52975 0.93903 0.89771 1.25461 0.99398 0.95505 0.94796 1.69615 1.35150 1.37140 1.01123 0.86267 0.83333 0.78920 0.77586 1.20181 1.21062 1.19908 1.21925 0.91364 0.92498 0.91451 1.22777 1.02411 0.94575 0.97043 1.22440 0.99450 0.97510 0.96481 1.22294 1.00311 0.97258 0.95830 1.22541 0.99897 0.93930 0.99739 0.92647 0.92665 0.92603 0.89329 0.92753 0.93502 0.93406 0.92795 0.89364 0.92326 0.90855 0.88233 0.92785 0.92464 0.92317 0.92964 0.91847 0.91910 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.76 37.16 0.29 -1.72 16 2 C -0.10 -1.76 0.76 -155.66 -0.12 -1.88 16 3 C -0.14 -2.38 8.28 37.16 0.31 -2.07 16 4 C -0.13 -2.42 8.29 37.16 0.31 -2.11 16 5 C 0.35 7.65 5.43 -30.29 -0.16 7.49 16 6 O -0.46 -9.85 11.12 5.94 0.07 -9.79 16 7 C 0.40 10.19 6.17 -12.25 -0.08 10.11 16 8 O -0.51 -13.91 10.52 5.28 0.06 -13.85 16 9 N -0.41 -10.19 2.54 -107.73 -0.27 -10.47 16 10 C -0.34 -8.81 7.39 -15.45 -0.11 -8.92 16 11 H 0.08 2.12 6.87 -52.48 -0.36 1.75 16 12 C 0.06 1.65 4.67 -17.34 -0.08 1.57 16 13 N -0.80 -22.21 10.89 55.55 0.61 -21.60 16 14 Si 0.91 20.71 29.57 -169.99 -5.03 15.68 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.13 2.83 2.83 -66.81 -0.19 2.64 16 19 C -0.13 -2.48 5.74 -25.04 -0.14 -2.62 16 20 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 21 C -0.12 -2.07 6.83 -25.07 -0.17 -2.24 16 22 C -0.12 -2.49 4.91 -25.62 -0.13 -2.61 16 23 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.09 1.77 6.20 -51.93 -0.32 1.45 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.88 6.65 -51.93 -0.35 1.53 16 32 H 0.27 7.11 8.30 -40.82 -0.34 6.77 16 33 H 0.07 1.60 6.49 -51.93 -0.34 1.26 16 34 H 0.10 2.09 5.84 -51.93 -0.30 1.79 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.23 7.01 -51.93 -0.36 0.87 16 41 H 0.06 1.46 7.45 -51.93 -0.39 1.08 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -28.82 314.37 -6.91 -35.73 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.62 Total: 4.05 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.45 Total: -4.49 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.33 Total: -32.07 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.12 Total: -23.64 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.82 -6.91 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737638139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.822 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds