Wall clock time and date at job start Mon Mar 30 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47295 * 2 1 4 4 C 1.52998 * 109.46881 * 239.99921 * 2 1 3 5 5 C 1.50707 * 109.46787 * 120.00221 * 2 1 3 6 6 O 1.20825 * 120.00020 * 359.97438 * 5 2 1 7 7 C 1.48027 * 119.99641 * 179.97438 * 5 2 1 8 8 O 1.21601 * 120.00209 * 6.98257 * 7 5 2 9 9 N 1.34776 * 119.99923 * 186.99072 * 7 5 2 10 10 C 1.35084 * 120.00159 * 185.01149 * 9 7 5 11 11 H 1.08006 * 120.00378 * 135.42167 * 10 9 7 12 12 C 1.40022 * 120.00231 * 315.42287 * 10 9 7 13 13 N 1.30758 * 119.99634 * 350.46792 * 12 10 9 14 14 Si 1.86801 * 120.00361 * 170.46378 * 12 10 9 15 15 H 1.48496 * 109.46733 * 60.00097 * 14 12 10 16 16 H 1.48498 * 109.47070 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47016 * 300.00350 * 14 12 10 18 18 C 1.46506 * 120.00009 * 4.73053 * 9 7 5 19 19 C 1.54261 * 110.03407 * 182.56894 * 18 9 7 20 20 C 1.54959 * 104.16164 * 217.13687 * 19 18 9 21 21 C 1.54892 * 102.77548 * 37.89214 * 20 19 18 22 22 C 1.53876 * 110.02898 * 65.35595 * 18 9 7 23 23 H 1.09003 * 109.47170 * 300.00490 * 1 2 3 24 24 H 1.09005 * 109.47110 * 60.00077 * 1 2 3 25 25 H 1.09001 * 109.47657 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47289 * 299.99850 * 3 2 1 28 28 H 1.08995 * 109.47192 * 59.99863 * 3 2 1 29 29 H 1.08998 * 109.47243 * 300.00135 * 4 2 1 30 30 H 1.08997 * 109.47217 * 60.00448 * 4 2 1 31 31 H 1.08998 * 109.47194 * 180.02562 * 4 2 1 32 32 H 0.97000 * 119.99919 * 185.02417 * 13 12 10 33 33 H 1.08999 * 110.01672 * 303.96958 * 18 9 7 34 34 H 1.09005 * 110.48554 * 335.78976 * 19 18 9 35 35 H 1.09006 * 110.48166 * 98.42845 * 19 18 9 36 36 H 1.08992 * 110.72321 * 279.57443 * 20 19 18 37 37 H 1.08997 * 110.92116 * 156.29567 * 20 19 18 38 38 H 1.09003 * 110.48193 * 203.40100 * 21 20 19 39 39 H 1.08998 * 110.60043 * 80.81873 * 21 20 19 40 40 H 1.09005 * 110.02893 * 238.57451 * 22 18 9 41 41 H 1.09003 * 110.03515 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2471 -1.1693 2.0260 7 6 3.4876 -0.8462 1.4645 8 8 4.2765 -0.2775 0.7345 9 7 3.9384 -1.6004 2.4865 10 6 5.2600 -1.6435 2.7625 11 1 5.6011 -1.5684 3.7845 12 6 6.1880 -1.7857 1.7235 13 7 5.7772 -2.0629 0.5135 14 14 8.0126 -1.5793 2.0661 15 1 8.4439 -2.5828 3.0721 16 1 8.7778 -1.7775 0.8089 17 1 8.2666 -0.2131 2.5894 18 6 2.9944 -2.3686 3.3020 19 6 3.7451 -3.0922 4.4388 20 6 3.0165 -4.4537 4.5678 21 6 2.6978 -4.8125 3.0951 22 6 2.3284 -3.4618 2.4481 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1299 -0.7217 -1.2491 32 1 6.4223 -2.2333 -0.1905 33 1 2.2356 -1.7059 3.7182 34 1 4.7907 -3.2431 4.1699 35 1 3.6669 -2.5273 5.3677 36 1 2.0991 -4.3469 5.1466 37 1 3.6688 -5.2034 5.0155 38 1 1.8558 -5.5029 3.0443 39 1 3.5725 -5.2427 2.6072 40 1 1.2463 -3.3300 2.4506 41 1 2.7072 -3.4205 1.4269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737638139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:42 Heat of formation + Delta-G solvation = -76.221764 kcal Electronic energy + Delta-G solvation = -22520.191767 eV Core-core repulsion = 19400.182864 eV Total energy + Delta-G solvation = -3120.008903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72084 -39.52579 -38.25731 -36.64336 -35.15583 -33.49574 -29.76888 -28.50387 -28.25760 -28.17495 -27.41497 -25.43123 -22.65106 -21.29620 -21.05618 -19.57706 -18.55206 -17.69254 -17.13690 -16.65242 -16.46207 -16.04093 -15.73214 -15.34186 -14.91993 -14.77801 -14.50497 -14.19064 -13.81340 -13.31247 -13.16864 -13.07624 -12.95866 -12.85895 -12.71385 -12.59700 -12.44682 -12.18986 -12.04198 -11.96916 -11.93036 -11.82599 -11.77496 -11.51969 -11.36509 -11.11043 -10.75700 -9.48152 -9.02812 -8.14846 -5.96210 0.48066 1.41775 1.47919 1.51491 2.29938 2.73755 2.85344 3.20110 3.58621 3.82548 3.85332 3.95190 4.02509 4.06888 4.26313 4.51857 4.63242 4.70360 4.71746 4.73412 4.76090 4.86053 4.86847 4.90545 4.93291 4.99778 5.05882 5.08831 5.13364 5.20589 5.23714 5.39415 5.42228 5.43931 5.48419 5.53059 5.66072 6.10351 6.33478 6.97225 7.22911 7.63495 8.33143 8.87352 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.010198 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.769864 B = 2744.866818 C = 4045.362336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.128 4.128 5 C 0.353 3.647 6 O -0.456 6.456 7 C 0.387 3.613 8 O -0.536 6.536 9 N -0.421 5.421 10 C -0.352 4.352 11 H 0.089 0.911 12 C 0.015 3.985 13 N -0.832 5.832 14 Si 0.973 3.027 15 H -0.258 1.258 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.124 3.876 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 -0.975 1.894 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.185 4.185 5 C 0.227 3.773 6 O -0.330 6.330 7 C 0.175 3.825 8 O -0.416 6.416 9 N -0.143 5.143 10 C -0.480 4.480 11 H 0.107 0.893 12 C -0.194 4.194 13 N -0.467 5.467 14 Si 0.798 3.202 15 H -0.182 1.182 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.021 3.979 19 C -0.167 4.167 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.134 -0.905 1.756 8.371 hybrid contribution 1.180 0.092 -0.228 1.205 sum -6.954 -0.813 1.528 7.167 Atomic orbital electron populations 1.21687 0.90923 1.02331 1.03004 1.20957 0.97981 0.97377 0.93432 1.21794 1.01982 0.92548 1.02676 1.21700 1.01532 0.99230 0.96030 1.25092 0.89562 0.75891 0.86716 1.90227 1.59451 1.38823 1.44483 1.20506 0.89783 0.85324 0.86904 1.90543 1.57139 1.47821 1.46130 1.43253 1.06174 1.37079 1.27825 1.19165 0.81651 1.53067 0.94167 0.89323 1.26267 1.03418 0.95174 0.94589 1.69759 1.36053 1.38997 1.01914 0.85322 0.78503 0.78835 0.77576 1.18214 1.21268 1.20318 1.22125 0.91105 0.92615 0.92066 1.22736 1.01015 0.96435 0.96517 1.22417 1.00511 0.95910 0.95748 1.22285 1.00792 0.95881 0.96385 1.22427 0.99814 0.95539 0.97534 0.92454 0.89347 0.92876 0.92798 0.89285 0.92893 0.93703 0.89179 0.93417 0.92865 0.91277 0.90579 0.91289 0.90077 0.90152 0.90010 0.93425 0.91244 0.95783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 7.76 71.98 0.56 -2.85 16 2 C -0.10 -3.39 0.76 -52.93 -0.04 -3.43 16 3 C -0.13 -4.43 8.28 71.98 0.60 -3.83 16 4 C -0.13 -4.53 8.29 71.98 0.60 -3.93 16 5 C 0.35 15.48 5.43 28.29 0.15 15.63 16 6 O -0.46 -19.52 11.12 -1.64 -0.02 -19.54 16 7 C 0.39 20.29 6.17 86.84 0.54 20.83 16 8 O -0.54 -30.96 10.52 -4.03 -0.04 -31.00 16 9 N -0.42 -21.83 2.54 -613.01 -1.56 -23.39 16 10 C -0.35 -18.99 7.39 84.63 0.63 -18.37 16 11 H 0.09 4.56 6.87 -2.91 -0.02 4.54 16 12 C 0.02 0.83 4.67 85.29 0.40 1.23 16 13 N -0.83 -48.57 10.89 21.84 0.24 -48.33 16 14 Si 0.97 43.55 29.57 68.60 2.03 45.58 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 C 0.12 5.38 2.83 45.71 0.13 5.51 16 19 C -0.13 -4.80 5.74 31.69 0.18 -4.62 16 20 C -0.11 -3.18 6.91 31.91 0.22 -2.96 16 21 C -0.12 -3.84 6.83 31.67 0.22 -3.63 16 22 C -0.11 -4.66 4.91 31.32 0.15 -4.50 16 23 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 24 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 26 H 0.05 2.19 6.20 -2.39 -0.01 2.18 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 2.09 6.65 -2.39 -0.02 2.08 16 32 H 0.26 14.69 8.30 -92.71 -0.77 13.92 16 33 H 0.07 3.01 6.49 -2.39 -0.02 3.00 16 34 H 0.08 3.20 5.84 -2.38 -0.01 3.19 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 2.67 7.01 -2.38 -0.02 2.65 16 41 H 0.02 1.14 7.45 -2.39 -0.02 1.12 16 Total: -1.00 -65.53 314.37 5.98 -59.55 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.00 Total: 22.06 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 4.33 Total: -4.93 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.32 Total: -71.72 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.06 Total: -50.55 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.53 5.98 -59.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737638139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.669 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds