Wall clock time and date at job start Mon Mar 30 2020 19:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53127 * 109.52595 * 299.87346 * 9 7 2 11 11 C 1.53035 * 109.27580 * 182.50439 * 10 9 7 12 12 N 1.46848 * 109.57728 * 59.08506 * 11 10 9 13 13 C 1.46895 * 111.00155 * 174.18846 * 12 11 10 14 14 C 1.52997 * 109.47589 * 314.21428 * 13 12 11 15 15 C 1.53000 * 109.47558 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.32596 * 307.24216 * 15 14 13 17 17 C 1.54489 * 110.36794 * 184.99740 * 15 14 13 18 18 C 1.54581 * 102.14449 * 225.81899 * 17 15 14 19 19 O 1.45832 * 104.44357 * 26.84949 * 18 17 15 20 20 C 1.34064 * 109.90656 * 329.39378 * 19 18 17 21 21 O 1.20822 * 125.09549 * 200.84608 * 20 19 18 22 22 C 1.46847 * 111.19872 * 298.28714 * 12 11 10 23 23 C 1.53042 * 109.51918 * 61.74097 * 22 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52388 * 59.99799 * 9 7 2 26 26 H 1.08999 * 109.50035 * 302.38317 * 10 9 7 27 27 H 1.09005 * 109.49719 * 62.49745 * 10 9 7 28 28 H 1.09004 * 109.41213 * 299.06767 * 11 10 9 29 29 H 1.09007 * 109.45291 * 179.12737 * 11 10 9 30 30 H 1.09001 * 109.47146 * 74.21304 * 13 12 11 31 31 H 1.09003 * 109.47709 * 194.20865 * 13 12 11 32 32 H 1.09001 * 109.46775 * 300.00103 * 14 13 12 33 33 H 1.08996 * 109.47283 * 59.99675 * 14 13 12 34 34 H 1.08997 * 110.86728 * 343.98039 * 17 15 14 35 35 H 1.08998 * 110.86759 * 107.65474 * 17 15 14 36 36 H 1.08992 * 110.43808 * 145.59090 * 18 17 15 37 37 H 1.09003 * 110.43974 * 268.10938 * 18 17 15 38 38 H 1.09001 * 109.46275 * 301.72960 * 22 12 11 39 39 H 1.08994 * 109.46431 * 181.75473 * 22 12 11 40 40 H 1.09005 * 109.49851 * 180.88026 * 23 22 12 41 41 H 1.08998 * 109.54005 * 60.78511 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3731 -2.5832 1.2512 11 6 -0.3414 -3.9363 1.2773 12 7 0.6523 -5.0175 1.2795 13 6 0.0059 -6.3264 1.4430 14 6 -1.0284 -6.2475 2.5677 15 6 -1.7022 -7.6106 2.7376 16 1 -2.0919 -7.9620 1.7822 17 6 -2.8372 -7.5229 3.7819 18 6 -2.5801 -8.7774 4.6478 19 8 -1.1489 -9.0239 4.5150 20 6 -0.7248 -8.6135 3.3112 21 8 0.2862 -8.9882 2.7660 22 6 1.4750 -4.9851 0.0635 23 6 2.2450 -3.6639 0.0021 24 1 -0.4850 0.8401 0.0004 25 1 0.6237 -2.5576 -0.8900 26 1 0.9963 -2.4846 2.1400 27 1 -0.3648 -1.7811 1.2326 28 1 -0.9758 -4.0280 0.3956 29 1 -0.9553 -4.0054 2.1753 30 1 -0.4893 -6.6057 0.5130 31 1 0.7581 -7.0746 1.6930 32 1 -0.5332 -5.9681 3.4977 33 1 -1.7807 -5.4994 2.3177 34 1 -2.7472 -6.6147 4.3779 35 1 -3.8133 -7.5772 3.3000 36 1 -2.8375 -8.5809 5.6885 37 1 -3.1494 -9.6256 4.2675 38 1 0.8321 -5.0718 -0.8124 39 1 2.1802 -5.8160 0.0799 40 1 2.8435 -3.6336 -0.9084 41 1 2.8989 -3.5823 0.8703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782087024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:00 Heat of formation + Delta-G solvation = -111.759691 kcal Electronic energy + Delta-G solvation = -20795.488527 eV Core-core repulsion = 17673.938584 eV Total energy + Delta-G solvation = -3121.549944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06032 -39.92360 -38.53724 -36.56765 -34.99582 -33.21225 -31.52193 -30.76672 -28.31573 -26.77253 -24.57018 -23.69919 -23.26035 -22.32727 -21.17129 -20.35311 -18.45000 -18.34713 -17.96968 -17.21575 -16.64973 -16.21120 -15.94309 -15.71831 -15.01093 -14.80395 -14.69849 -14.58571 -14.38330 -14.05872 -13.78819 -13.40207 -13.13653 -12.85461 -12.70559 -12.59466 -12.43849 -12.39020 -12.15401 -11.99678 -11.86123 -11.79762 -11.39418 -11.34633 -10.94730 -10.79748 -10.58331 -10.35267 -9.15963 -8.07339 -6.20318 1.02570 1.41578 1.42244 1.52405 2.31160 2.44577 2.89758 3.08635 3.19317 3.40445 3.73485 3.96446 4.08510 4.15303 4.21616 4.30602 4.36684 4.45787 4.51920 4.58665 4.67973 4.71953 4.74974 4.90165 4.93564 4.95097 5.04406 5.06654 5.15704 5.16629 5.24326 5.34683 5.56804 5.63763 5.80919 6.01092 6.03646 6.32127 6.32632 6.42115 6.44391 6.90142 7.46981 8.97256 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.003732 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.094516 B = 7500.245424 C = 7930.621832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.044 3.956 10 C -0.096 4.096 11 C 0.063 3.937 12 N -0.546 5.546 13 C 0.049 3.951 14 C -0.100 4.100 15 C -0.144 4.144 16 H 0.130 0.870 17 C -0.143 4.143 18 C 0.047 3.953 19 O -0.371 6.371 20 C 0.481 3.519 21 O -0.498 6.498 22 C 0.066 3.934 23 C -0.100 4.100 24 H 0.261 0.739 25 H -0.011 1.011 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.017 0.983 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -15.984 8.176 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.135 4.135 11 C -0.064 4.064 12 N -0.271 5.271 13 C -0.078 4.078 14 C -0.138 4.138 15 C -0.164 4.164 16 H 0.148 0.852 17 C -0.180 4.180 18 C -0.026 4.026 19 O -0.288 6.288 20 C 0.324 3.676 21 O -0.384 6.384 22 C -0.062 4.062 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.008 0.992 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.886 -16.069 8.489 20.688 hybrid contribution 0.144 0.997 -0.983 1.408 sum -9.742 -15.072 7.506 19.452 Atomic orbital electron populations 1.70001 1.07011 1.27053 1.51458 1.25709 0.95729 1.02191 0.94793 0.85642 0.78713 0.79570 0.78229 1.20121 1.19612 1.20716 1.21580 0.92917 0.92370 1.50504 0.93402 1.18665 0.93153 0.92358 0.93319 1.21438 0.99210 0.95021 0.97783 1.22193 0.93163 0.91283 0.99746 1.61999 1.23701 1.03304 1.38117 1.22259 0.97042 0.90704 0.97811 1.21596 0.98103 0.95070 0.99028 1.22585 0.95788 0.94979 1.03081 0.85242 1.23137 0.99251 0.99470 0.96175 1.24566 0.74576 0.98885 1.04541 1.86999 1.29462 1.77823 1.34538 1.23668 0.85316 0.79389 0.79253 1.90673 1.27760 1.59140 1.60826 1.22014 0.96112 0.98097 0.89935 1.21548 0.98076 0.94122 1.00011 0.93019 0.99239 0.95373 0.91650 0.96503 0.89429 0.94738 0.91085 0.91323 0.88538 0.88329 0.85384 0.84832 0.87478 0.95832 0.90528 0.92980 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.01 11.36 21.45 0.24 -52.77 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 2.27 2.16 -11.46 -0.02 2.24 16 10 C -0.10 -4.65 5.12 30.65 0.16 -4.49 16 11 C 0.06 2.42 4.85 86.32 0.42 2.84 16 12 N -0.55 -19.81 4.81 -896.36 -4.31 -24.12 16 13 C 0.05 1.44 5.10 86.30 0.44 1.88 16 14 C -0.10 -2.22 3.79 30.59 0.12 -2.11 16 15 C -0.14 -2.35 3.00 -10.83 -0.03 -2.38 16 16 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 17 C -0.14 -1.14 6.79 31.64 0.21 -0.92 16 18 C 0.05 0.39 7.90 72.52 0.57 0.96 16 19 O -0.37 -7.60 11.05 -50.16 -0.55 -8.16 16 20 C 0.48 11.53 7.77 71.44 0.55 12.08 16 21 O -0.50 -16.27 16.18 21.65 0.35 -15.92 16 22 C 0.07 2.50 5.42 86.33 0.47 2.97 16 23 C -0.10 -4.41 5.32 30.65 0.16 -4.25 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 3.50 6.16 -2.38 -0.01 3.49 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 2.85 5.81 -2.38 -0.01 2.83 16 30 H 0.03 0.96 8.08 -2.39 -0.02 0.95 16 31 H 0.07 2.30 6.29 -2.39 -0.02 2.28 16 32 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.10 1.95 6.21 -2.39 -0.01 1.93 16 34 H 0.10 0.76 7.81 -2.39 -0.02 0.75 16 35 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 40 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.58 319.44 2.47 -68.11 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.00 Total: 6.76 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.72 Total: -20.21 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.06 Total: -76.89 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.20 Total: -24.08 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.58 2.47 -68.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782087024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.651 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds