Wall clock time and date at job start Mon Mar 30 2020 19:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99557 * 2 1 4 4 H 1.48494 * 109.47151 * 86.39159 * 3 2 1 5 5 H 1.48498 * 109.47169 * 326.38573 * 3 2 1 6 6 H 1.48499 * 109.46524 * 206.38809 * 3 2 1 7 7 C 1.37871 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00085 * 0.40525 * 7 2 1 9 9 C 1.50702 * 119.99921 * 180.41004 * 7 2 1 10 10 C 1.52998 * 115.54906 * 272.37425 * 9 7 2 11 11 N 1.46495 * 109.47539 * 297.92901 * 10 9 7 12 12 C 1.34771 * 120.00373 * 184.74242 * 11 10 9 13 13 O 1.21291 * 119.99843 * 4.74068 * 12 11 10 14 14 C 1.50702 * 120.00288 * 184.73860 * 12 11 10 15 15 C 1.52996 * 109.46996 * 186.06919 * 14 12 11 16 16 H 1.08998 * 109.52344 * 304.87074 * 15 14 12 17 17 C 1.53187 * 109.52261 * 184.68585 * 15 14 12 18 18 C 1.53175 * 109.03585 * 183.11075 * 17 15 14 19 19 C 1.53099 * 109.16278 * 56.98478 * 18 17 15 20 20 O 1.42903 * 109.41117 * 302.38630 * 19 18 17 21 21 C 1.42905 * 114.09909 * 61.16009 * 20 19 18 22 22 C 1.53001 * 117.49716 * 126.67096 * 9 7 2 23 23 C 1.52996 * 60.00039 * 252.51054 * 22 9 7 24 24 H 0.97001 * 120.00318 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46413 * 57.92706 * 10 9 7 26 26 H 1.08998 * 109.47130 * 177.92247 * 10 9 7 27 27 H 0.97002 * 119.99700 * 4.74817 * 11 10 9 28 28 H 1.09000 * 109.46858 * 306.06573 * 14 12 11 29 29 H 1.09000 * 109.46930 * 66.06665 * 14 12 11 30 30 H 1.09002 * 109.53910 * 302.98413 * 17 15 14 31 31 H 1.08998 * 109.54093 * 63.24613 * 17 15 14 32 32 H 1.08998 * 109.52557 * 297.07599 * 18 17 15 33 33 H 1.09001 * 109.56967 * 176.91335 * 18 17 15 34 34 H 1.08994 * 109.47826 * 182.40475 * 19 18 17 35 35 H 1.09000 * 109.49193 * 62.37126 * 19 18 17 36 36 H 1.09001 * 109.48124 * 178.85595 * 21 20 19 37 37 H 1.09006 * 109.48889 * 58.82835 * 21 20 19 38 38 H 1.09000 * 117.50369 * 0.02562 * 22 9 7 39 39 H 1.09001 * 117.49563 * 145.01391 * 22 9 7 40 40 H 1.09005 * 117.49740 * 252.51467 * 23 22 9 41 41 H 1.08995 * 117.49767 * 107.49176 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4202 2.0906 1.3972 5 1 1.4868 2.6295 -0.7751 6 1 3.5827 1.4194 -0.6223 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0076 9 6 3.5116 -1.1939 0.0088 10 6 4.1799 -1.1311 -1.3660 11 7 3.8118 -2.3175 -2.1427 12 6 4.3615 -2.5263 -3.3554 13 8 5.2239 -1.7794 -3.7670 14 6 3.9046 -3.6879 -4.1999 15 6 4.7835 -3.7876 -5.4482 16 1 4.7713 -2.8358 -5.9793 17 6 4.2485 -4.8929 -6.3640 18 6 5.1801 -5.0358 -7.5714 19 6 6.6003 -5.3262 -7.0788 20 8 7.0251 -4.2756 -6.2082 21 6 6.2190 -4.1260 -5.0377 22 6 4.2113 -2.0088 1.0985 23 6 4.2108 -0.4804 1.1676 24 1 -0.4851 0.8400 -0.0004 25 1 3.8474 -0.2356 -1.8910 26 1 5.2624 -1.0991 -1.2426 27 1 3.1723 -2.9526 -1.7841 28 1 3.9856 -4.6098 -3.6240 29 1 2.8671 -3.5351 -4.4971 30 1 4.2138 -5.8349 -5.8166 31 1 3.2470 -4.6308 -6.7052 32 1 5.1761 -4.1098 -8.1463 33 1 4.8381 -5.8571 -8.2013 34 1 7.2758 -5.3865 -7.9322 35 1 6.6115 -6.2728 -6.5386 36 1 6.6198 -3.3219 -4.4206 37 1 6.2250 -5.0569 -4.4706 38 1 3.5817 -2.5453 1.8083 39 1 5.1480 -2.5005 0.8359 40 1 5.1473 0.0335 0.9505 41 1 3.5809 -0.0110 1.9232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:26 Heat of formation + Delta-G solvation = -99.396109 kcal Electronic energy + Delta-G solvation = -20707.468965 eV Core-core repulsion = 17586.455147 eV Total energy + Delta-G solvation = -3121.013818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10902 -39.89815 -38.69480 -35.36257 -34.96449 -34.21904 -32.96100 -29.46698 -27.96591 -26.65719 -25.91987 -23.59970 -23.30396 -21.32438 -21.06664 -20.70476 -18.50652 -17.78999 -17.31804 -17.10236 -16.92847 -16.58886 -16.16945 -15.60698 -15.42505 -15.18935 -14.86032 -14.74283 -14.24781 -13.89310 -13.78940 -13.52570 -13.40322 -13.10467 -12.74489 -12.58672 -12.20271 -12.09414 -11.98399 -11.90704 -11.70405 -11.56409 -11.21748 -10.99317 -10.82974 -10.67095 -10.36424 -10.28467 -9.84374 -8.30704 -6.36793 1.32282 1.39189 1.49222 1.74002 2.34374 2.36166 3.00494 3.05145 3.24583 3.73595 3.82812 3.87505 4.02685 4.06341 4.11859 4.30600 4.35984 4.40029 4.42136 4.53498 4.58679 4.63674 4.73898 4.77902 4.83946 4.85746 4.90162 5.00292 5.08536 5.11947 5.14090 5.27887 5.30542 5.44481 5.47773 5.62576 5.70157 6.28161 6.31754 6.70313 6.78170 7.33899 7.38516 8.83621 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.004171 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.315097 B = 6711.719210 C = 6976.962606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.029 3.971 3 Si 0.926 3.074 4 H -0.270 1.270 5 H -0.303 1.303 6 H -0.242 1.242 7 C -0.477 4.477 8 H 0.050 0.950 9 C -0.038 4.038 10 C 0.165 3.835 11 N -0.704 5.704 12 C 0.499 3.501 13 O -0.591 6.591 14 C -0.126 4.126 15 C -0.103 4.103 16 H 0.058 0.942 17 C -0.115 4.115 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.409 6.409 21 C 0.066 3.934 22 C -0.151 4.151 23 C -0.195 4.195 24 H 0.264 0.736 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.412 0.588 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 -12.464 -10.437 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.169 4.169 3 Si 0.752 3.248 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.165 1.165 7 C -0.515 4.515 8 H 0.068 0.932 9 C -0.039 4.039 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.288 3.712 13 O -0.473 6.473 14 C -0.166 4.166 15 C -0.122 4.122 16 H 0.077 0.923 17 C -0.152 4.152 18 C -0.191 4.191 19 C -0.027 4.027 20 O -0.329 6.329 21 C -0.011 4.011 22 C -0.188 4.188 23 C -0.233 4.233 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.247 0.753 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.416 -11.705 -10.751 19.002 hybrid contribution -0.746 0.994 0.460 1.325 sum 9.670 -10.710 -10.291 17.724 Atomic orbital electron populations 1.70003 1.07958 1.27848 1.52391 1.25650 0.95041 1.02244 0.93970 0.86084 0.80296 0.79799 0.78622 1.19529 1.23028 1.16507 1.20351 0.88347 0.92991 1.49798 0.93222 1.19467 0.93040 1.04023 0.87386 1.20820 0.96834 0.87120 0.91228 1.45912 1.45551 1.25818 1.18065 1.21400 0.81082 0.87120 0.81624 1.90641 1.33567 1.50319 1.72750 1.21713 1.02057 0.97021 0.95814 1.21474 0.95061 1.00013 0.95642 0.92326 1.21671 0.99493 0.98207 0.95833 1.22180 0.95515 1.03103 0.98285 1.22832 0.96105 0.89880 0.93902 1.87927 1.54328 1.55777 1.34831 1.22702 0.90485 1.00977 0.86931 1.22861 1.01473 0.92416 1.02088 1.22997 1.01804 0.96189 1.02278 0.92667 0.94937 0.92743 0.75255 0.86113 0.86891 0.89815 0.90344 0.92324 0.88421 0.87977 0.91883 0.90484 0.91933 0.89481 0.88119 0.88625 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.96 21.45 0.30 -55.94 16 2 C 0.03 1.61 5.47 84.65 0.46 2.08 16 3 Si 0.93 43.73 24.87 68.60 1.71 45.44 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.24 -10.77 5.67 99.48 0.56 -10.20 16 7 C -0.48 -24.62 9.04 25.60 0.23 -24.39 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 9 C -0.04 -1.59 0.87 -52.93 -0.05 -1.64 16 10 C 0.16 6.65 5.20 86.38 0.45 7.10 16 11 N -0.70 -24.60 5.45 -463.07 -2.53 -27.12 16 12 C 0.50 16.52 7.46 87.66 0.65 17.18 16 13 O -0.59 -24.01 14.19 -3.06 -0.04 -24.05 16 14 C -0.13 -2.86 5.18 29.85 0.15 -2.71 16 15 C -0.10 -2.39 2.03 -10.70 -0.02 -2.41 16 16 H 0.06 1.71 7.87 -2.39 -0.02 1.70 16 17 C -0.11 -1.86 5.31 30.72 0.16 -1.69 16 18 C -0.15 -2.36 6.14 30.69 0.19 -2.17 16 19 C 0.05 0.85 6.84 72.02 0.49 1.35 16 20 O -0.41 -10.83 10.77 -148.98 -1.60 -12.44 16 21 C 0.07 1.67 5.84 72.01 0.42 2.09 16 22 C -0.15 -5.33 9.95 30.59 0.30 -5.02 16 23 C -0.19 -7.48 7.46 30.59 0.23 -7.25 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.03 1.48 6.80 -2.39 -0.02 1.47 16 26 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16 27 H 0.41 13.28 8.23 -92.71 -0.76 12.51 16 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.45 6.23 -2.39 -0.01 2.44 16 37 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 41 H 0.08 3.19 7.14 -2.39 -0.02 3.18 16 Total: -1.00 -67.07 324.35 1.62 -65.46 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.10 Total: 26.13 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 3.68 Total: -17.48 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.23 Total: -83.06 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.65 Total: -36.48 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.71 Total: 45.44 kcal Total: -67.07 1.62 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.939 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds