Wall clock time and date at job start Mon Mar 30 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99897 * 2 1 4 4 N 1.46494 * 109.47248 * 124.99584 * 3 2 1 5 5 C 1.46493 * 120.00444 * 270.27463 * 4 3 2 6 6 C 1.50702 * 109.47427 * 269.72511 * 5 4 3 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99945 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46706 * 120.00063 * 10 8 6 13 13 H 1.48497 * 109.47206 * 240.00218 * 10 8 6 14 14 C 1.34784 * 119.99635 * 90.00174 * 4 3 2 15 15 O 1.21283 * 119.99649 * 180.02562 * 14 4 3 16 16 C 1.50694 * 119.99988 * 0.02562 * 14 4 3 17 17 O 1.42905 * 109.47179 * 179.97438 * 16 14 4 18 18 C 1.42897 * 113.99899 * 179.97438 * 17 16 14 19 19 C 1.53003 * 112.84748 * 50.34248 * 18 17 16 20 20 C 1.53774 * 113.62190 * 279.13800 * 18 17 16 21 21 C 1.53948 * 87.02347 * 220.05352 * 20 18 17 22 22 C 1.53782 * 87.11188 * 25.36205 * 21 20 18 23 23 H 1.07995 * 120.00099 * 0.02562 * 1 2 3 24 24 H 1.08007 * 119.99796 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99959 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47073 * 4.99678 * 3 2 1 27 27 H 1.09004 * 109.47082 * 245.00302 * 3 2 1 28 28 H 1.09002 * 109.47192 * 29.72648 * 5 4 3 29 29 H 1.08996 * 109.47342 * 149.72358 * 5 4 3 30 30 H 0.96991 * 120.00123 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47224 * 299.99701 * 16 14 4 32 32 H 1.09002 * 109.47054 * 60.00213 * 16 14 4 33 33 H 1.08996 * 109.47466 * 69.66214 * 19 18 17 34 34 H 1.08997 * 109.46722 * 189.66404 * 19 18 17 35 35 H 1.08997 * 109.46945 * 309.65947 * 19 18 17 36 36 H 1.09001 * 113.61184 * 334.57307 * 20 18 17 37 37 H 1.09001 * 113.61325 * 105.46965 * 20 18 17 38 38 H 1.09001 * 113.53686 * 270.81235 * 21 20 18 39 39 H 1.09001 * 113.74480 * 139.94391 * 21 20 18 40 40 H 1.09001 * 113.61288 * 220.09209 * 22 21 20 41 41 H 1.08997 * 113.61270 * 89.19253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5569 1.8594 2.4264 6 6 2.8430 3.3377 2.4891 7 1 3.3036 3.8347 1.6482 8 6 2.5156 4.0559 3.6196 9 7 1.9542 3.4508 4.6435 10 14 2.8696 5.8885 3.6970 11 1 3.4997 6.3251 2.4252 12 1 1.5988 6.6299 3.8992 13 1 3.7909 6.1674 4.8277 14 6 4.2497 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6972 0.3185 -0.3482 17 8 6.0576 -0.1089 -0.2542 18 6 6.5826 -0.6486 -1.4688 19 6 6.3419 0.2606 -2.6757 20 6 6.1874 -2.1144 -1.7132 21 6 7.6221 -2.3315 -2.2275 22 6 8.0348 -1.1398 -1.3475 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4865 1.6911 2.5450 29 1 3.0954 1.3510 3.2262 30 1 1.7243 3.9560 5.4389 31 1 4.0682 -0.5283 -0.6227 32 1 4.6126 1.0954 -1.1080 33 1 6.9582 1.1550 -2.5855 34 1 6.6054 -0.2716 -3.5896 35 1 5.2905 0.5458 -2.7117 36 1 5.9634 -2.6644 -0.7992 37 1 5.4238 -2.2386 -2.4811 38 1 7.7345 -2.1452 -3.2956 39 1 8.0620 -3.2784 -1.9145 40 1 8.7605 -0.4783 -1.8207 41 1 8.3168 -1.4229 -0.3334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814136914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:56 Heat of formation + Delta-G solvation = -37.215009 kcal Electronic energy + Delta-G solvation = -20821.126360 eV Core-core repulsion = 17702.808916 eV Total energy + Delta-G solvation = -3118.317444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02116 -38.83524 -35.92276 -35.36988 -33.17446 -32.05966 -29.22185 -28.85505 -26.80290 -25.80604 -25.31752 -23.43000 -22.36484 -19.99216 -18.87919 -18.49660 -17.21602 -16.46632 -16.20395 -15.59714 -15.52302 -15.07398 -14.62888 -14.52887 -14.03579 -13.73223 -13.41305 -12.85354 -12.71993 -12.39615 -12.29919 -12.11213 -11.79477 -11.68113 -11.41171 -11.27752 -11.17881 -11.06025 -10.86116 -10.80691 -10.59660 -10.29499 -10.16140 -9.60833 -9.38043 -9.20458 -8.80139 -8.41521 -7.68270 -6.02142 -4.06758 2.42040 3.31457 3.36139 3.39814 3.44428 3.45685 4.24868 4.43193 4.44644 4.50912 4.65070 4.69338 5.07382 5.13313 5.25111 5.29788 5.31859 5.32600 5.39763 5.49199 5.53802 5.59019 5.65938 5.68561 5.72111 5.84485 5.90905 5.99000 6.09638 6.17004 6.25764 6.76984 6.88410 7.04413 7.33867 7.47211 7.57688 7.94723 8.25406 8.39912 8.92821 9.11315 9.58260 11.06077 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.004905 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.234060 B = 5706.832550 C = 6527.281973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.593 5.593 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.519 6.519 16 C 0.043 3.957 17 O -0.343 6.343 18 C 0.081 3.919 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.139 4.139 22 C -0.120 4.120 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -9.942 -17.021 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.130 3.870 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.394 6.394 16 C -0.037 4.037 17 O -0.261 6.261 18 C 0.041 3.959 19 C -0.220 4.220 20 C -0.200 4.200 21 C -0.176 4.176 22 C -0.157 4.157 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.111 -9.859 -16.135 19.351 hybrid contribution -0.183 0.969 -0.137 0.996 sum 3.929 -8.889 -16.272 18.953 Atomic orbital electron populations 1.23822 0.95802 1.01801 1.00397 1.23435 0.96461 0.98997 1.00067 1.20600 0.93236 0.95485 0.89577 1.48179 1.10038 1.60778 1.13667 1.19288 0.95369 0.93861 0.78515 1.21479 1.40301 0.93357 1.01330 0.92376 1.24933 0.95060 0.98762 0.95333 1.69946 1.42101 1.36084 1.05221 0.86445 0.77875 0.84956 0.78163 1.19801 1.20991 1.20856 1.19991 0.82617 0.79187 0.89099 1.90695 1.52273 1.54953 1.41517 1.22338 0.84856 0.99171 0.97318 1.88127 1.25113 1.81197 1.31628 1.23057 0.95612 0.91577 0.85640 1.22107 1.02802 1.00154 0.96983 1.23626 0.97206 0.97284 1.01876 1.22709 0.96712 0.98793 0.99432 1.23053 0.94411 0.96973 1.01284 0.88222 0.88757 0.87833 0.89228 0.91042 0.94814 0.93853 0.92785 0.91222 0.90842 0.91257 0.91171 0.91618 0.89204 0.91340 0.90083 0.90875 0.90827 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.01 0.42 -1.88 16 2 C -0.17 -2.40 9.74 -36.03 -0.35 -2.75 16 3 C 0.13 2.18 5.65 -5.20 -0.03 2.16 16 4 N -0.59 -12.82 2.44 -176.44 -0.43 -13.25 16 5 C 0.25 6.62 5.16 -5.20 -0.03 6.59 16 6 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.51 11.16 7.75 -10.98 -0.09 11.08 16 15 O -0.52 -14.15 16.08 -14.35 -0.23 -14.38 16 16 C 0.04 0.70 4.34 36.00 0.16 0.86 16 17 O -0.34 -5.94 9.83 -55.14 -0.54 -6.48 16 18 C 0.08 1.00 1.39 -89.81 -0.12 0.88 16 19 C -0.16 -1.64 8.80 37.16 0.33 -1.32 16 20 C -0.16 -1.68 7.33 -25.83 -0.19 -1.87 16 21 C -0.14 -1.21 7.74 -25.83 -0.20 -1.41 16 22 C -0.12 -1.31 7.50 -25.92 -0.19 -1.50 16 23 H 0.10 1.25 7.84 -52.49 -0.41 0.83 16 24 H 0.09 1.03 8.06 -52.48 -0.42 0.61 16 25 H 0.10 1.38 7.83 -52.49 -0.41 0.97 16 26 H 0.09 1.49 7.73 -51.93 -0.40 1.09 16 27 H 0.07 0.95 6.44 -51.93 -0.33 0.61 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 32 H 0.07 1.04 5.65 -51.93 -0.29 0.75 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.55 7.34 -51.93 -0.38 0.17 16 35 H 0.06 0.64 6.27 -51.93 -0.33 0.31 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.58 7.64 -51.93 -0.40 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -34.36 339.93 -7.75 -42.10 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.66 Total: -1.11 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.72 Total: -2.94 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.31 Total: -39.41 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.77 Total: -20.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.36 -7.75 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814136914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.887 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds