Wall clock time and date at job start Mon Mar 30 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99897 * 2 1 4 4 N 1.46494 * 109.47248 * 124.99584 * 3 2 1 5 5 C 1.46493 * 120.00444 * 270.27463 * 4 3 2 6 6 C 1.50702 * 109.47427 * 269.72511 * 5 4 3 7 7 H 1.07999 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99945 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46706 * 120.00063 * 10 8 6 13 13 H 1.48497 * 109.47206 * 240.00218 * 10 8 6 14 14 C 1.34784 * 119.99635 * 90.00174 * 4 3 2 15 15 O 1.21283 * 119.99649 * 180.02562 * 14 4 3 16 16 C 1.50694 * 119.99988 * 0.02562 * 14 4 3 17 17 O 1.42905 * 109.47179 * 179.97438 * 16 14 4 18 18 C 1.42897 * 113.99899 * 179.97438 * 17 16 14 19 19 C 1.53003 * 112.84748 * 50.34248 * 18 17 16 20 20 C 1.53774 * 113.62190 * 279.13800 * 18 17 16 21 21 C 1.53948 * 87.02347 * 220.05352 * 20 18 17 22 22 C 1.53782 * 87.11188 * 25.36205 * 21 20 18 23 23 H 1.07995 * 120.00099 * 0.02562 * 1 2 3 24 24 H 1.08007 * 119.99796 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99959 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47073 * 4.99678 * 3 2 1 27 27 H 1.09004 * 109.47082 * 245.00302 * 3 2 1 28 28 H 1.09002 * 109.47192 * 29.72648 * 5 4 3 29 29 H 1.08996 * 109.47342 * 149.72358 * 5 4 3 30 30 H 0.96991 * 120.00123 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47224 * 299.99701 * 16 14 4 32 32 H 1.09002 * 109.47054 * 60.00213 * 16 14 4 33 33 H 1.08996 * 109.47466 * 69.66214 * 19 18 17 34 34 H 1.08997 * 109.46722 * 189.66404 * 19 18 17 35 35 H 1.08997 * 109.46945 * 309.65947 * 19 18 17 36 36 H 1.09001 * 113.61184 * 334.57307 * 20 18 17 37 37 H 1.09001 * 113.61325 * 105.46965 * 20 18 17 38 38 H 1.09001 * 113.53686 * 270.81235 * 21 20 18 39 39 H 1.09001 * 113.74480 * 139.94391 * 21 20 18 40 40 H 1.09001 * 113.61288 * 220.09209 * 22 21 20 41 41 H 1.08997 * 113.61270 * 89.19253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5569 1.8594 2.4264 6 6 2.8430 3.3377 2.4891 7 1 3.3036 3.8347 1.6482 8 6 2.5156 4.0559 3.6196 9 7 1.9542 3.4508 4.6435 10 14 2.8696 5.8885 3.6970 11 1 3.4997 6.3251 2.4252 12 1 1.5988 6.6299 3.8992 13 1 3.7909 6.1674 4.8277 14 6 4.2497 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6972 0.3185 -0.3482 17 8 6.0576 -0.1089 -0.2542 18 6 6.5826 -0.6486 -1.4688 19 6 6.3419 0.2606 -2.6757 20 6 6.1874 -2.1144 -1.7132 21 6 7.6221 -2.3315 -2.2275 22 6 8.0348 -1.1398 -1.3475 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4865 1.6911 2.5450 29 1 3.0954 1.3510 3.2262 30 1 1.7243 3.9560 5.4389 31 1 4.0682 -0.5283 -0.6227 32 1 4.6126 1.0954 -1.1080 33 1 6.9582 1.1550 -2.5855 34 1 6.6054 -0.2716 -3.5896 35 1 5.2905 0.5458 -2.7117 36 1 5.9634 -2.6644 -0.7992 37 1 5.4238 -2.2386 -2.4811 38 1 7.7345 -2.1452 -3.2956 39 1 8.0620 -3.2784 -1.9145 40 1 8.7605 -0.4783 -1.8207 41 1 8.3168 -1.4229 -0.3334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814136914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:56 Heat of formation + Delta-G solvation = -58.447048 kcal Electronic energy + Delta-G solvation = -20822.047050 eV Core-core repulsion = 17702.808916 eV Total energy + Delta-G solvation = -3119.238134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16990 -40.30351 -37.34885 -36.70650 -35.11876 -33.68970 -30.61883 -29.98729 -28.41674 -26.89312 -26.61397 -24.82623 -23.81148 -21.21435 -20.07424 -19.80837 -18.67405 -18.28994 -17.65687 -17.12176 -16.90186 -16.34461 -16.03334 -15.83271 -15.35996 -15.01445 -14.56649 -14.30627 -14.09912 -14.05279 -13.38125 -13.31925 -13.06689 -12.98181 -12.89568 -12.81991 -12.61358 -12.27930 -12.21833 -12.16505 -12.08586 -11.68809 -11.65506 -11.12947 -10.66136 -10.57908 -10.41826 -10.31734 -9.51737 -8.23546 -6.38390 1.30084 1.35700 1.38630 1.50282 1.73016 2.07123 2.38256 3.01006 3.06564 3.53400 3.64531 3.72661 3.87857 3.92176 4.00634 4.10152 4.23434 4.28084 4.42730 4.44622 4.61912 4.75800 4.83143 4.86653 4.88086 4.97495 5.02778 5.05528 5.07401 5.14679 5.20169 5.29571 5.48300 5.50266 5.71029 5.74668 5.93802 6.04584 6.26275 6.67819 6.73054 7.26162 7.42756 8.84228 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.004905 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.234060 B = 5706.832550 C = 6527.281973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.187 4.187 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.493 3.507 15 O -0.587 6.587 16 C 0.061 3.939 17 O -0.384 6.384 18 C 0.063 3.937 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.122 4.122 22 C -0.130 4.130 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.026 0.974 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -9.946 -20.143 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.008 3.992 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.282 3.718 15 O -0.468 6.468 16 C -0.018 4.018 17 O -0.303 6.303 18 C 0.024 3.976 19 C -0.218 4.218 20 C -0.198 4.198 21 C -0.159 4.159 22 C -0.168 4.168 23 H 0.118 0.882 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.044 0.956 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.634 -9.879 -19.321 22.002 hybrid contribution -0.067 0.916 0.843 1.247 sum 3.567 -8.963 -18.478 20.845 Atomic orbital electron populations 1.24065 0.95452 1.02978 0.97842 1.23318 0.96887 0.98153 1.02298 1.20905 0.92793 0.96677 0.88785 1.48166 1.11183 1.59954 1.13382 1.18717 0.93939 0.92836 0.80149 1.21737 1.40526 0.94376 1.01579 0.92762 1.25872 0.94583 1.03874 0.94789 1.70062 1.42768 1.38137 1.05842 0.85348 0.78272 0.78883 0.78181 1.19058 1.19159 1.20869 1.21124 0.81866 0.78109 0.90736 1.90649 1.54111 1.57744 1.44247 1.22197 0.85370 1.00775 0.93498 1.88092 1.25401 1.81881 1.34935 1.23567 0.96194 0.92918 0.84880 1.22126 1.03102 0.99686 0.96844 1.23592 0.98983 0.95446 1.01822 1.22703 0.94972 0.97994 1.00245 1.23137 0.94222 0.98530 1.00891 0.88172 0.86472 0.86837 0.89992 0.87490 0.95599 0.98877 0.92373 0.88104 0.88112 0.91999 0.88381 0.90995 0.90994 0.89227 0.87592 0.90091 0.89801 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.19 -4.93 9.74 25.64 0.25 -4.68 16 3 C 0.13 4.05 5.65 85.63 0.48 4.54 16 4 N -0.60 -26.23 2.44 -830.53 -2.03 -28.26 16 5 C 0.26 14.78 5.16 85.64 0.44 15.22 16 6 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 7 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 10 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 14 C 0.49 22.34 7.75 87.65 0.68 23.02 16 15 O -0.59 -33.92 16.08 16.00 0.26 -33.66 16 16 C 0.06 1.91 4.34 71.23 0.31 2.22 16 17 O -0.38 -13.28 9.83 -129.94 -1.28 -14.55 16 18 C 0.06 1.46 1.39 -10.27 -0.01 1.44 16 19 C -0.16 -2.73 8.80 71.98 0.63 -2.10 16 20 C -0.16 -2.96 7.33 31.18 0.23 -2.73 16 21 C -0.12 -1.78 7.74 31.18 0.24 -1.54 16 22 C -0.13 -2.71 7.50 31.12 0.23 -2.48 16 23 H 0.10 2.31 7.84 -2.91 -0.02 2.29 16 24 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 25 H 0.11 2.77 7.83 -2.91 -0.02 2.74 16 26 H 0.08 2.67 7.73 -2.39 -0.02 2.65 16 27 H 0.11 2.53 6.44 -2.38 -0.02 2.51 16 28 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 29 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.10 2.52 7.69 -2.39 -0.02 2.50 16 32 H 0.10 2.59 5.65 -2.39 -0.01 2.58 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.11 7.34 -2.39 -0.02 1.09 16 35 H 0.07 1.12 6.27 -2.39 -0.01 1.10 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.11 1.06 7.64 -2.39 -0.02 1.04 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.53 339.93 5.41 -74.11 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.99 Total: 12.49 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.16 Total: -0.93 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.74 Total: -85.20 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.02 Total: -48.21 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.53 5.41 -74.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814136914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.666 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds