Wall clock time and date at job start Mon Mar 30 2020 19:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99696 * 2 1 4 4 C 1.52992 * 109.47201 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47186 * 66.48180 * 4 3 2 6 6 C 1.46500 * 119.99738 * 84.85855 * 5 4 3 7 7 C 1.50702 * 109.47561 * 80.21425 * 6 5 4 8 8 H 1.07999 * 119.99420 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00004 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99795 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46866 * 90.00038 * 11 9 7 13 13 H 1.48501 * 109.46986 * 209.99622 * 11 9 7 14 14 H 1.48496 * 109.47486 * 330.00327 * 11 9 7 15 15 C 1.34770 * 120.00277 * 264.58005 * 5 4 3 16 16 O 1.21616 * 119.99681 * 5.55615 * 15 5 4 17 17 C 1.47099 * 120.00372 * 185.55944 * 15 5 4 18 18 C 1.50695 * 119.99939 * 40.21198 * 17 15 5 19 19 C 1.32987 * 120.00096 * 220.21221 * 17 15 5 20 20 C 1.51408 * 136.31883 * 359.63087 * 19 17 15 21 21 C 1.53373 * 87.52104 * 206.05725 * 20 19 17 22 22 C 1.51409 * 136.31684 * 180.02562 * 19 17 15 23 23 H 1.09005 * 109.46757 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47071 * 299.99401 * 1 2 3 25 25 H 1.09003 * 109.47608 * 60.00189 * 1 2 3 26 26 H 1.08997 * 109.47174 * 59.99767 * 3 2 1 27 27 H 1.09004 * 109.46989 * 300.00423 * 3 2 1 28 28 H 1.08999 * 109.47077 * 306.47829 * 4 3 2 29 29 H 1.09003 * 109.47315 * 186.48433 * 4 3 2 30 30 H 1.09001 * 109.47187 * 200.21490 * 6 5 4 31 31 H 1.09002 * 109.46942 * 320.21154 * 6 5 4 32 32 H 0.96997 * 120.00014 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47374 * 53.07504 * 18 17 15 34 34 H 1.09004 * 109.47377 * 173.07494 * 18 17 15 35 35 H 1.09001 * 109.47120 * 293.07764 * 18 17 15 36 36 H 1.09000 * 113.55711 * 320.63612 * 20 19 17 37 37 H 1.08995 * 113.56595 * 91.36691 * 20 19 17 38 38 H 1.08999 * 113.96931 * 220.28976 * 21 20 19 39 39 H 1.09004 * 113.60176 * 88.79180 * 21 20 19 40 40 H 1.08999 * 113.55837 * 268.62714 * 22 19 17 41 41 H 1.08998 * 113.56398 * 39.35901 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9782 0.5970 -1.2674 6 6 4.1827 1.4518 -2.4396 7 6 5.5225 2.1339 -2.3363 8 1 6.1579 1.9495 -1.4827 9 6 5.9366 2.9941 -3.3311 10 7 5.1626 3.2190 -4.3702 11 14 7.5971 3.8402 -3.2027 12 1 8.6347 2.9942 -3.8454 13 1 7.5366 5.1559 -3.8886 14 1 7.9401 4.0429 -1.7722 15 6 4.2028 -0.7290 -1.3530 16 8 3.9419 -1.4520 -0.4105 17 6 4.7635 -1.3020 -2.5863 18 6 5.8569 -0.5749 -3.3257 19 6 4.3056 -2.4617 -3.0488 20 6 3.2650 -3.4760 -2.6237 21 6 4.0806 -4.5313 -3.3810 22 6 4.5971 -3.3606 -4.2318 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8497 0.5469 0.8254 29 1 3.9782 2.1740 0.1154 30 1 4.1538 0.8425 -3.3430 31 1 3.3946 2.2035 -2.4830 32 1 5.4541 3.8239 -5.0702 33 1 6.6725 -0.3495 -2.6386 34 1 6.2275 -1.2029 -4.1359 35 1 5.4617 0.3538 -3.7374 36 1 3.2333 -3.6424 -1.5469 37 1 2.2797 -3.2958 -3.0534 38 1 3.4732 -5.2455 -3.9368 39 1 4.8505 -5.0067 -2.7732 40 1 3.9774 -3.1487 -5.1032 41 1 5.6575 -3.4324 -4.4737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825693906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:22 Heat of formation + Delta-G solvation = -35.225018 kcal Electronic energy + Delta-G solvation = -21476.071936 eV Core-core repulsion = 18357.840785 eV Total energy + Delta-G solvation = -3118.231151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41102 -38.01931 -37.13568 -34.97067 -32.85802 -32.23717 -29.40364 -27.26572 -26.04243 -25.77461 -24.94521 -23.12436 -23.03506 -21.33885 -19.12961 -17.04821 -16.54500 -16.13391 -15.97870 -15.47641 -15.14496 -14.95717 -14.74933 -14.40710 -13.85658 -13.36838 -12.91081 -12.56117 -12.26441 -12.14649 -12.11908 -11.69552 -11.58308 -11.53983 -11.43028 -11.24475 -10.98205 -10.91832 -10.64111 -10.52714 -10.30264 -10.01206 -9.85707 -9.68082 -9.28701 -8.76935 -8.53234 -8.08679 -7.58392 -6.17968 -4.24219 2.22124 3.22370 3.30133 3.33209 3.87986 4.05710 4.24428 4.35925 4.86444 4.96547 5.11986 5.14675 5.39101 5.42626 5.51547 5.65277 5.69690 5.73038 5.82138 5.82913 5.85430 5.92860 6.05363 6.05767 6.15360 6.35583 6.44169 6.48627 6.61238 6.69565 6.77573 6.89102 7.07963 7.29761 7.47392 7.57049 7.73766 7.77037 8.06338 8.48850 8.81892 9.19619 9.42757 10.87928 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.007892 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.794778 B = 3547.177054 C = 5090.146732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.227 3.773 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.560 3.440 16 O -0.557 6.557 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.098 4.098 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -6.896 1.982 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.108 3.892 7 C -0.570 4.570 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.720 3.280 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.349 3.651 16 O -0.438 6.438 17 C -0.118 4.118 18 C -0.178 4.178 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.175 4.175 22 C -0.135 4.135 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.023 -7.301 2.297 9.155 hybrid contribution 0.684 1.020 -0.095 1.232 sum -4.338 -6.282 2.202 7.945 Atomic orbital electron populations 1.22662 0.82635 1.02012 0.99187 1.88115 1.18134 1.27434 1.95165 1.23042 0.95539 0.84914 0.99723 1.21284 0.91003 0.99806 0.87988 1.47971 1.64644 1.06923 1.12441 1.19777 0.96614 0.89818 0.83011 1.21477 1.02590 1.26114 1.06801 0.92000 1.24907 0.97397 0.96309 0.95162 1.69922 1.36788 1.36535 1.09710 0.86572 0.84070 0.78984 0.78344 1.20428 1.21181 1.19850 1.18217 0.77485 0.82136 0.87239 1.90682 1.53340 1.59964 1.39766 1.20654 1.00745 0.93649 0.96743 1.21345 0.96126 1.01732 0.98572 1.22807 0.98956 0.92812 0.98030 1.22047 0.96779 0.93480 1.01560 1.22634 1.00063 0.95817 0.99012 1.22125 1.01452 0.94025 0.95938 0.90288 0.94819 0.94633 0.93407 0.93118 0.90181 0.88921 0.92853 0.95397 0.92526 0.91704 0.93796 0.85714 0.90168 0.89797 0.91274 0.90171 0.89154 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.90 9.98 -35.53 -0.35 -7.26 16 3 C 0.05 0.78 6.27 37.15 0.23 1.02 16 4 C 0.12 2.37 5.81 -4.04 -0.02 2.34 16 5 N -0.59 -12.93 2.44 -176.46 -0.43 -13.36 16 6 C 0.23 5.37 4.63 -5.19 -0.02 5.34 16 7 C -0.53 -13.23 7.07 -34.44 -0.24 -13.48 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.65 5.32 -17.82 -0.09 1.56 16 10 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 11 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.56 12.68 7.06 -12.67 -0.09 12.59 16 16 O -0.56 -13.53 15.13 4.97 0.08 -13.45 16 17 C -0.12 -2.38 5.04 -102.85 -0.52 -2.90 16 18 C -0.12 -2.49 8.35 36.00 0.30 -2.19 16 19 C -0.12 -2.26 6.57 -100.48 -0.66 -2.92 16 20 C -0.10 -1.64 7.56 -27.56 -0.21 -1.85 16 21 C -0.14 -1.80 8.17 -26.21 -0.21 -2.02 16 22 C -0.10 -1.41 7.45 -27.41 -0.20 -1.61 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.89 8.00 -51.93 -0.42 0.47 16 28 H 0.08 1.58 7.34 -51.93 -0.38 1.20 16 29 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 30 H 0.05 1.32 4.77 -51.93 -0.25 1.07 16 31 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 32 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.06 1.36 7.98 -51.93 -0.41 0.94 16 34 H 0.04 0.79 7.35 -51.93 -0.38 0.40 16 35 H 0.13 2.86 3.91 -51.93 -0.20 2.66 16 36 H 0.08 1.43 7.61 -51.93 -0.40 1.04 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -29.07 334.28 -7.21 -36.28 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.62 Total: 3.28 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.63 Total: -2.56 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.31 Total: -36.32 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.28 Total: -20.71 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.07 -7.21 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825693906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.057 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds