Wall clock time and date at job start Mon Mar 30 2020 19:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 109.47157 * 2 1 4 4 C 1.32996 * 119.99445 * 94.72678 * 3 2 1 5 5 C 1.47098 * 119.99770 * 173.15330 * 4 3 2 6 6 O 1.21616 * 120.00177 * 353.41628 * 5 4 3 7 7 N 1.34773 * 119.99999 * 173.41798 * 5 4 3 8 8 C 1.47024 * 125.65161 * 359.68904 * 7 5 4 9 9 C 1.54333 * 107.27099 * 178.84871 * 8 7 5 10 10 C 1.55159 * 103.01947 * 338.14354 * 9 8 7 11 11 O 1.42904 * 111.00340 * 277.23212 * 10 9 8 12 12 C 1.50699 * 111.03800 * 153.39208 * 10 9 8 13 13 H 1.07999 * 120.00151 * 6.33778 * 12 10 9 14 14 C 1.37874 * 120.00088 * 186.32903 * 12 10 9 15 15 N 1.31515 * 120.00036 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00261 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47093 * 89.99931 * 16 14 12 18 18 H 1.48495 * 109.47166 * 210.00387 * 16 14 12 19 19 H 1.48501 * 109.46942 * 330.00022 * 16 14 12 20 20 C 1.47426 * 125.64894 * 179.97438 * 7 5 4 21 21 C 1.50693 * 120.00492 * 275.00133 * 3 2 1 22 22 C 1.53005 * 109.47112 * 265.35167 * 21 3 2 23 23 H 1.08999 * 109.47420 * 300.00014 * 1 2 3 24 24 H 1.09006 * 109.47606 * 59.99977 * 1 2 3 25 25 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47637 * 240.00625 * 2 1 3 27 27 H 1.08993 * 109.47472 * 120.00252 * 2 1 3 28 28 H 1.08003 * 120.00218 * 353.14666 * 4 3 2 29 29 H 1.09001 * 109.88158 * 298.39850 * 8 7 5 30 30 H 1.09004 * 109.87969 * 59.56065 * 8 7 5 31 31 H 1.08997 * 110.85371 * 219.67523 * 9 8 7 32 32 H 1.08995 * 110.51420 * 96.45106 * 9 8 7 33 33 H 0.96696 * 113.99835 * 173.64810 * 11 10 9 34 34 H 0.96999 * 120.00511 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.36762 * 322.92792 * 20 7 5 36 36 H 1.08996 * 110.37217 * 85.14535 * 20 7 5 37 37 H 1.09002 * 109.46775 * 25.34617 * 21 3 2 38 38 H 1.08996 * 109.47413 * 145.34431 * 21 3 2 39 39 H 1.08997 * 109.46758 * 299.99852 * 22 21 3 40 40 H 1.08998 * 109.46910 * 59.99680 * 22 21 3 41 41 H 1.09004 * 109.46890 * 179.97438 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3434 2.0161 1.1479 5 6 2.9742 3.3449 1.1400 6 8 3.3204 3.8475 0.0881 7 7 3.1685 4.0055 2.2986 8 6 2.7941 3.5202 3.6349 9 6 3.2345 4.5939 4.6523 10 6 4.3338 5.3737 3.8837 11 8 5.5933 4.7043 3.9718 12 6 4.4424 6.7909 4.3847 13 1 3.8714 7.1043 5.2462 14 6 5.2708 7.6872 3.7434 15 7 5.9658 7.3056 2.6942 16 14 5.4059 9.4437 4.3648 17 1 6.4985 9.5315 5.3668 18 1 5.7039 10.3498 3.2267 19 1 4.1228 9.8459 4.9949 20 6 3.7863 5.3371 2.4352 21 6 2.1762 2.1693 -1.3000 22 6 3.6139 2.0389 -1.8071 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.1328 1.5238 2.0859 29 1 1.7149 3.3767 3.6883 30 1 3.3059 2.5810 3.8451 31 1 3.6454 4.1323 5.5502 32 1 2.3999 5.2491 4.9017 33 1 6.2880 5.1003 3.4283 34 1 6.5484 7.9363 2.2427 35 1 4.5998 5.4532 1.7191 36 1 3.0401 6.1183 2.2904 37 1 1.4914 1.7510 -2.0377 38 1 1.9408 3.2216 -1.1414 39 1 4.2986 2.4571 -1.0694 40 1 3.8491 0.9864 -1.9657 41 1 3.7179 2.5798 -2.7477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:57 Heat of formation + Delta-G solvation = -99.352531 kcal Electronic energy + Delta-G solvation = -21168.976521 eV Core-core repulsion = 18047.964592 eV Total energy + Delta-G solvation = -3121.011929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11050 -39.29846 -37.23421 -35.99664 -34.24596 -32.82801 -32.05445 -30.76139 -29.48695 -27.24745 -25.36004 -24.18863 -23.93410 -21.51632 -20.86166 -19.13367 -18.82197 -18.11093 -17.12982 -16.61405 -16.44202 -16.24408 -15.79761 -15.06725 -14.94512 -14.64970 -14.63976 -14.36742 -13.96503 -13.61094 -13.49520 -13.30072 -13.21197 -12.94606 -12.84538 -12.57485 -12.48144 -12.34593 -12.25510 -12.10950 -12.09403 -11.66055 -11.58358 -11.20459 -10.69502 -10.53383 -10.23926 -10.08283 -9.31862 -8.25428 -6.43152 0.45331 1.41065 1.42653 1.52616 2.24015 2.37174 2.39567 3.00651 3.63959 3.80372 3.80484 4.09931 4.12649 4.26159 4.33306 4.40344 4.44949 4.46597 4.63548 4.67763 4.68946 4.76247 4.82072 4.96508 5.02680 5.05064 5.10077 5.12634 5.20526 5.34647 5.39300 5.43032 5.46269 5.50999 5.57017 5.74543 5.76144 6.07207 6.63704 6.80972 7.25719 7.33699 7.33978 8.79698 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.004742 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.278984 B = 5903.233403 C = 6375.016059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.019 4.019 4 C -0.233 4.233 5 C 0.535 3.465 6 O -0.581 6.581 7 N -0.617 5.617 8 C 0.109 3.891 9 C -0.114 4.114 10 C 0.231 3.769 11 O -0.587 6.587 12 C -0.558 4.558 13 H 0.068 0.932 14 C 0.026 3.974 15 N -0.916 5.916 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.113 3.887 21 C -0.095 4.095 22 C -0.130 4.130 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.372 0.628 34 H 0.268 0.732 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 -13.758 -3.018 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.021 4.021 4 C -0.254 4.254 5 C 0.329 3.671 6 O -0.465 6.465 7 N -0.349 5.349 8 C -0.013 4.013 9 C -0.151 4.151 10 C 0.191 3.809 11 O -0.395 6.395 12 C -0.596 4.596 13 H 0.087 0.913 14 C -0.175 4.175 15 N -0.555 5.555 16 Si 0.789 3.211 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.010 4.010 21 C -0.132 4.132 22 C -0.187 4.187 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.164 0.836 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.220 0.780 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.255 -13.862 -3.319 17.560 hybrid contribution 0.922 1.921 -0.213 2.142 sum -9.333 -11.941 -3.532 15.562 Atomic orbital electron populations 1.21717 0.93209 1.03049 1.02186 1.20807 0.97309 0.90101 1.04505 1.22846 0.89156 0.96114 0.93974 1.22425 1.07904 0.94597 1.00427 1.19024 0.79513 0.86651 0.81892 1.90696 1.54021 1.70807 1.30936 1.48753 1.59522 1.19412 1.07184 1.22129 1.00484 0.97771 0.80950 1.22631 0.97618 0.96985 0.97890 1.19868 0.81658 0.90246 0.89148 1.86093 1.22564 1.59037 1.71795 1.21823 1.27168 0.95814 1.14838 0.91349 1.25837 0.94317 1.03056 0.94258 1.69852 1.27962 1.37263 1.20464 0.85457 0.78821 0.78969 0.77807 1.19952 1.21156 1.18876 1.22676 0.95379 0.82057 1.00923 1.20776 0.98037 1.00014 0.94338 1.21533 0.95973 1.00985 1.00198 0.92797 0.92592 0.90260 0.89017 0.89577 0.83603 0.89181 0.90769 0.89655 0.89446 0.77975 0.92229 0.93795 0.94466 0.89793 0.92109 0.94591 0.91727 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.09 -1.45 6.08 29.85 0.18 -1.27 16 3 C -0.02 -0.47 4.62 -17.62 -0.08 -0.55 16 4 C -0.23 -6.89 9.11 23.43 0.21 -6.68 16 5 C 0.54 21.86 7.62 86.57 0.66 22.52 16 6 O -0.58 -27.36 11.34 -4.08 -0.05 -27.41 16 7 N -0.62 -26.10 3.33 -816.06 -2.71 -28.81 16 8 C 0.11 3.68 6.08 86.73 0.53 4.21 16 9 C -0.11 -4.39 6.13 31.79 0.19 -4.20 16 10 C 0.23 11.44 0.87 -10.15 -0.01 11.43 16 11 O -0.59 -30.88 13.16 -148.98 -1.96 -32.84 16 12 C -0.56 -29.63 8.27 25.60 0.21 -29.41 16 13 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 14 C 0.03 1.39 5.29 84.65 0.45 1.84 16 15 N -0.92 -51.12 10.69 21.45 0.23 -50.89 16 16 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.11 5.73 5.38 86.85 0.47 6.19 16 21 C -0.09 -2.63 5.35 29.85 0.16 -2.47 16 22 C -0.13 -3.80 9.33 71.98 0.67 -3.13 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.76 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 28 H 0.15 3.49 7.39 -2.91 -0.02 3.46 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 31 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 33 H 0.37 20.54 7.56 -74.06 -0.56 19.98 16 34 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.04 2.56 7.33 -2.39 -0.02 2.54 16 36 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 37 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.06 2.14 6.06 -2.39 -0.01 2.13 16 39 H 0.03 1.33 6.19 -2.39 -0.01 1.32 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.22 329.47 2.34 -62.88 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.45 Total: 35.42 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.36 Total: -2.76 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.48 Total: -79.70 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -2.01 Total: -60.25 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.22 2.34 -62.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.470 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds