Wall clock time and date at job start Mon Mar 30 2020 19:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47043 * 2 1 4 4 C 1.50705 * 120.00076 * 275.60482 * 3 2 1 5 5 C 1.32995 * 120.00032 * 95.60288 * 3 2 1 6 6 C 1.50695 * 120.00048 * 5.63339 * 5 3 2 7 7 C 1.47101 * 119.99877 * 185.63299 * 5 3 2 8 8 O 1.21616 * 120.00240 * 256.48489 * 7 5 3 9 9 N 1.34781 * 120.00007 * 76.49078 * 7 5 3 10 10 C 1.47427 * 125.64922 * 5.16418 * 9 7 5 11 11 C 1.54904 * 104.83284 * 155.84021 * 10 9 7 12 12 C 1.55157 * 101.58061 * 37.00895 * 11 10 9 13 13 O 1.42898 * 110.72012 * 82.86723 * 12 11 10 14 14 C 1.50704 * 110.71643 * 205.95843 * 12 11 10 15 15 H 1.07997 * 120.00322 * 22.33915 * 14 12 11 16 16 C 1.37883 * 119.99738 * 202.34510 * 14 12 11 17 17 N 1.31513 * 119.99858 * 174.25489 * 16 14 12 18 18 Si 1.86797 * 119.99966 * 354.24469 * 16 14 12 19 19 H 1.48503 * 109.46759 * 87.20570 * 18 16 14 20 20 H 1.48505 * 109.47185 * 207.20160 * 18 16 14 21 21 H 1.48496 * 109.47195 * 327.20413 * 18 16 14 22 22 C 1.47025 * 125.64709 * 185.12443 * 9 7 5 23 23 H 1.08998 * 109.47534 * 59.99385 * 1 2 3 24 24 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46866 * 299.99741 * 1 2 3 26 26 H 1.09002 * 109.47039 * 240.00672 * 2 1 3 27 27 H 1.08995 * 109.47645 * 120.00089 * 2 1 3 28 28 H 1.09009 * 109.46949 * 274.53721 * 4 3 2 29 29 H 1.08997 * 109.47368 * 34.53396 * 4 3 2 30 30 H 1.09004 * 109.47298 * 154.54218 * 4 3 2 31 31 H 1.09000 * 109.47418 * 184.87611 * 6 5 3 32 32 H 1.09000 * 109.47129 * 304.88264 * 6 5 3 33 33 H 1.09000 * 109.46770 * 64.88050 * 6 5 3 34 34 H 1.09004 * 110.36188 * 36.99955 * 10 9 7 35 35 H 1.09005 * 110.36560 * 274.68053 * 10 9 7 36 36 H 1.08999 * 111.00522 * 278.93565 * 11 10 9 37 37 H 1.09001 * 111.03806 * 155.10269 * 11 10 9 38 38 H 0.96693 * 114.00484 * 56.38246 * 13 12 11 39 39 H 0.96998 * 119.99968 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.88037 * 61.68027 * 22 9 7 41 41 H 1.08993 * 109.88404 * 300.50954 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1633 2.1737 -1.2989 5 6 2.3600 2.0103 1.1463 6 6 2.3507 1.2202 2.4294 7 6 2.7315 3.4335 1.1615 8 8 3.8998 3.7560 1.2618 9 7 1.7770 4.3802 1.0644 10 6 0.3233 4.1359 1.0461 11 6 -0.3077 5.4605 1.5432 12 6 0.6324 6.5139 0.9000 13 8 0.2535 6.7701 -0.4539 14 6 0.6316 7.7897 1.7023 15 1 0.3415 7.7733 2.7424 16 6 1.0011 8.9778 1.1082 17 7 0.8929 10.1071 1.7735 18 14 1.6557 8.9834 -0.6413 19 1 0.5207 9.0787 -1.5941 20 1 2.5581 10.1479 -0.8285 21 1 2.4087 7.7283 -0.8921 22 6 2.0133 5.8276 0.9602 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.1290 1.9503 -1.7526 29 1 1.3649 1.8711 -1.9764 30 1 2.0910 3.2444 -1.1072 31 1 2.5598 1.8854 3.2673 32 1 1.3719 0.7604 2.5660 33 1 3.1139 0.4433 2.3832 34 1 0.0676 3.3177 1.7194 35 1 -0.0112 3.9131 0.0328 36 1 -0.2784 5.5231 2.6310 37 1 -1.3277 5.5704 1.1750 38 1 -0.6641 7.0566 -0.5580 39 1 1.1532 10.9430 1.3557 40 1 2.5760 6.0469 0.0528 41 1 2.5634 6.1773 1.8337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:06 Heat of formation + Delta-G solvation = -102.673670 kcal Electronic energy + Delta-G solvation = -21640.891190 eV Core-core repulsion = 18519.735246 eV Total energy + Delta-G solvation = -3121.155944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39512 -39.43364 -37.70877 -36.35283 -34.50302 -32.67445 -31.59548 -30.93957 -30.19243 -27.38238 -25.76018 -25.01582 -23.85002 -21.70428 -21.14195 -19.43870 -19.01993 -17.50066 -17.33758 -16.93870 -16.47260 -16.37670 -15.95805 -15.31806 -14.95606 -14.66494 -14.57177 -14.30319 -13.95543 -13.83826 -13.74432 -13.51667 -13.38298 -13.33728 -13.12163 -12.84108 -12.62782 -12.56445 -12.40239 -12.13603 -12.13139 -12.04454 -11.59784 -11.28187 -10.94473 -10.72252 -10.36191 -9.71029 -9.62588 -8.39601 -6.52745 0.72792 1.41406 1.47171 1.55295 1.66259 2.09455 2.38397 2.93509 3.39482 3.57369 3.77952 3.86364 3.99222 4.23063 4.24060 4.30767 4.43791 4.48482 4.57014 4.59779 4.67103 4.74063 4.76867 4.82830 4.84345 4.90012 4.96524 5.08907 5.10310 5.16771 5.21132 5.24162 5.30876 5.42839 5.50553 5.58289 5.76634 6.04139 6.52809 6.56380 6.99290 7.06165 7.27921 8.73319 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.005648 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.634381 B = 4955.900698 C = 5010.917960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.065 4.065 4 C -0.133 4.133 5 C -0.187 4.187 6 C -0.093 4.093 7 C 0.562 3.438 8 O -0.603 6.603 9 N -0.608 5.608 10 C 0.111 3.889 11 C -0.138 4.138 12 C 0.220 3.780 13 O -0.564 6.564 14 C -0.547 4.547 15 H 0.049 0.951 16 C 0.030 3.970 17 N -0.932 5.932 18 Si 0.997 3.003 19 H -0.268 1.268 20 H -0.336 1.336 21 H -0.276 1.276 22 C 0.118 3.882 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.388 0.612 39 H 0.268 0.732 40 H 0.040 0.960 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 -22.324 -4.977 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.066 4.066 4 C -0.189 4.189 5 C -0.190 4.190 6 C -0.150 4.150 7 C 0.353 3.647 8 O -0.485 6.485 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.176 4.176 12 C 0.179 3.821 13 O -0.374 6.374 14 C -0.585 4.585 15 H 0.068 0.932 16 C -0.170 4.170 17 N -0.570 5.570 18 Si 0.831 3.169 19 H -0.194 1.194 20 H -0.268 1.268 21 H -0.203 1.203 22 C -0.005 4.005 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.239 0.761 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.382 -22.204 -5.001 23.179 hybrid contribution 0.390 1.441 -0.297 1.522 sum -3.992 -20.763 -5.297 21.797 Atomic orbital electron populations 1.21688 0.93127 1.02873 1.02371 1.20698 0.97133 0.90212 1.04261 1.22310 0.93767 0.97717 0.92787 1.21021 1.03255 0.98691 0.95953 1.21187 1.07828 0.91075 0.98929 1.20645 1.04059 0.98661 0.91633 1.18980 0.83844 0.87189 0.74645 1.90742 1.20683 1.84084 1.53003 1.48775 1.08375 1.06073 1.70739 1.22457 0.77684 0.98531 1.02327 1.23311 1.00093 0.93136 1.01107 1.19838 0.90092 0.92307 0.79829 1.86076 1.34545 1.88411 1.28375 1.21472 1.47139 0.91779 0.98105 0.93233 1.25803 0.93819 0.94906 1.02491 1.70061 1.47841 0.99013 1.40048 0.84922 0.77912 0.74324 0.79768 1.19413 1.26790 1.20255 1.22271 0.99052 0.79771 0.99389 0.92566 0.90564 0.92442 0.89783 0.89494 0.90928 0.88754 0.94328 0.93686 0.88226 0.89746 0.88492 0.89928 0.91143 0.87327 0.76134 0.92356 0.94118 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.89 71.98 0.71 -0.83 16 2 C -0.09 -1.14 5.67 29.85 0.17 -0.97 16 3 C -0.06 -1.39 5.36 -17.61 -0.09 -1.49 16 4 C -0.13 -3.11 9.74 71.24 0.69 -2.41 16 5 C -0.19 -5.05 4.70 -18.71 -0.09 -5.13 16 6 C -0.09 -1.91 8.63 71.23 0.61 -1.29 16 7 C 0.56 21.54 5.58 86.57 0.48 22.02 16 8 O -0.60 -28.97 17.44 -4.08 -0.07 -29.04 16 9 N -0.61 -23.02 2.79 -816.04 -2.28 -25.30 16 10 C 0.11 3.19 6.63 86.85 0.58 3.76 16 11 C -0.14 -4.54 6.22 31.98 0.20 -4.35 16 12 C 0.22 9.51 0.68 -10.35 -0.01 9.50 16 13 O -0.56 -22.67 8.64 -148.98 -1.29 -23.96 16 14 C -0.55 -29.52 8.73 25.60 0.22 -29.29 16 15 H 0.05 2.94 7.98 -2.91 -0.02 2.92 16 16 C 0.03 1.73 5.46 84.66 0.46 2.19 16 17 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 18 Si 1.00 49.42 24.95 68.60 1.71 51.13 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.34 -17.24 7.11 99.48 0.71 -16.54 16 21 H -0.28 -13.95 5.25 99.48 0.52 -13.43 16 22 C 0.12 5.48 5.74 86.73 0.50 5.98 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 0.99 6.36 -2.39 -0.02 0.98 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.17 6.28 -2.38 -0.01 1.15 16 31 H 0.04 1.08 7.99 -2.39 -0.02 1.06 16 32 H 0.10 1.42 7.72 -2.39 -0.02 1.40 16 33 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 34 H 0.10 2.22 7.78 -2.39 -0.02 2.20 16 35 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 37 H 0.11 2.89 8.12 -2.39 -0.02 2.87 16 38 H 0.39 12.68 9.05 -74.06 -0.67 12.01 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.04 2.05 6.47 -2.39 -0.02 2.04 16 41 H 0.05 2.54 7.82 -2.39 -0.02 2.52 16 Total: -1.00 -74.69 326.99 2.98 -71.72 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.16 Total: 14.43 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.44 Total: -2.32 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.98 Total: -81.96 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.36 Total: -53.00 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.71 Total: 51.13 kcal Total: -74.69 2.98 -71.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.958 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds