Wall clock time and date at job start Mon Mar 30 2020 19:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47302 * 270.00602 * 3 2 1 5 5 H 1.48505 * 109.46973 * 30.00823 * 3 2 1 6 6 H 1.48502 * 109.46679 * 150.00441 * 3 2 1 7 7 C 1.40042 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46382 * 120.00063 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99754 * 5.00074 * 9 7 2 11 11 N 1.34770 * 120.00121 * 184.72239 * 9 7 2 12 12 C 1.47603 * 118.64416 * 174.79482 * 11 9 7 13 13 C 1.53605 * 112.34096 * 222.04262 * 12 11 9 14 14 C 1.50877 * 109.95589 * 40.83400 * 13 12 11 15 15 C 1.52572 * 109.35702 * 268.02831 * 14 13 12 16 16 H 1.08998 * 108.51155 * 323.75155 * 15 14 13 17 17 O 1.42900 * 108.38909 * 206.17724 * 15 14 13 18 18 C 1.42899 * 114.00275 * 145.30784 * 17 15 14 19 19 C 1.53783 * 113.61685 * 249.13632 * 18 17 15 20 20 C 1.53953 * 87.01771 * 220.04888 * 19 18 17 21 21 C 1.53773 * 87.11538 * 25.36141 * 20 19 18 22 22 C 1.47090 * 114.32712 * 85.00774 * 15 14 13 23 23 C 1.44578 * 118.64326 * 355.06819 * 11 9 7 24 24 H 0.97005 * 119.99953 * 359.97438 * 1 2 3 25 25 H 1.09004 * 108.94926 * 342.84038 * 12 11 9 26 26 H 1.08996 * 108.94959 * 101.47249 * 12 11 9 27 27 H 1.08999 * 109.50770 * 280.63642 * 13 12 11 28 28 H 1.08998 * 109.26409 * 160.87113 * 13 12 11 29 29 H 1.08998 * 109.49330 * 148.06105 * 14 13 12 30 30 H 1.09007 * 109.51010 * 27.99909 * 14 13 12 31 31 H 1.09005 * 112.84812 * 20.33494 * 18 17 15 32 32 H 1.08996 * 113.61308 * 334.56823 * 19 18 17 33 33 H 1.09001 * 113.61141 * 105.46980 * 19 18 17 34 34 H 1.09006 * 113.53406 * 270.80932 * 20 19 18 35 35 H 1.08995 * 113.74531 * 139.94440 * 20 19 18 36 36 H 1.09007 * 113.61758 * 220.09111 * 21 20 19 37 37 H 1.08999 * 113.69329 * 89.19815 * 21 20 19 38 38 H 1.09005 * 109.32711 * 176.93808 * 22 15 14 39 39 H 1.09003 * 109.32783 * 57.46747 * 22 15 14 40 40 H 1.09007 * 109.45110 * 209.28764 * 23 11 9 41 41 H 1.08996 * 109.45227 * 329.20836 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0466 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5384 1.4401 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4825 -0.0919 11 7 1.9455 -3.6457 0.0950 12 6 1.1739 -4.8987 0.2095 13 6 1.7755 -5.8626 1.2432 14 6 2.2324 -5.0944 2.4588 15 6 3.6988 -4.7081 2.2911 16 1 4.2137 -5.5193 1.7765 17 8 4.2766 -4.5575 3.5894 18 6 5.6437 -4.9660 3.6682 19 6 5.8587 -6.2410 4.5008 20 6 7.1221 -5.5643 5.0628 21 6 6.4489 -4.2189 4.7445 22 6 3.9153 -3.4643 1.5364 23 6 3.3910 -3.6162 0.0872 24 1 -0.4850 0.8401 0.0004 25 1 0.1515 -4.6593 0.5021 26 1 1.1557 -5.3932 -0.7617 27 1 2.6263 -6.3831 0.8036 28 1 1.0198 -6.5904 1.5387 29 1 2.1195 -5.7171 3.3462 30 1 1.6291 -4.1930 2.5677 31 1 6.1344 -4.9919 2.6952 32 1 5.0842 -6.4097 5.2489 33 1 6.0670 -7.1255 3.8989 34 1 8.0178 -5.7550 4.4715 35 1 7.2743 -5.7350 6.1285 36 1 7.1330 -3.4733 4.3391 37 1 5.8358 -3.8324 5.5587 38 1 4.9813 -3.2377 1.5125 39 1 3.3866 -2.6475 2.0277 40 1 3.7707 -4.5441 -0.3407 41 1 3.7336 -2.7733 -0.5130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871328973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:08 Heat of formation + Delta-G solvation = -66.929208 kcal Electronic energy + Delta-G solvation = -21402.545980 eV Core-core repulsion = 18282.940033 eV Total energy + Delta-G solvation = -3119.605948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68772 -38.45892 -36.58676 -34.72732 -32.57990 -32.39998 -31.02178 -26.78307 -25.79381 -25.61011 -24.65549 -23.98751 -21.27469 -20.30169 -19.54868 -18.63055 -17.16304 -16.60778 -15.71906 -15.57247 -14.87787 -14.75223 -14.40903 -14.21566 -13.97419 -13.36766 -12.80843 -12.71265 -12.50206 -12.17813 -11.99314 -11.92156 -11.58493 -11.33528 -11.12907 -11.03656 -10.94462 -10.89015 -10.61244 -10.47888 -10.34051 -10.25471 -10.17347 -10.11322 -9.91055 -9.15011 -8.82890 -7.54865 -7.17714 -6.17183 -4.61298 3.14903 3.22151 3.25143 3.86971 4.10555 4.53598 4.55473 4.58341 4.60709 4.81664 4.81890 5.07580 5.27650 5.33388 5.48763 5.57448 5.61425 5.68148 5.70932 5.71073 5.75791 5.86797 5.88300 6.01928 6.04370 6.12494 6.14612 6.28887 6.33944 6.43102 6.51339 6.62862 6.69973 6.78630 6.93868 7.47051 7.58325 7.76670 8.18192 8.36541 9.05076 9.45869 10.60104 10.78768 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.005699 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.731804 B = 4911.920293 C = 5961.817430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.639 5.639 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.111 4.111 15 C 0.106 3.894 16 H 0.044 0.956 17 O -0.374 6.374 18 C 0.064 3.936 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.163 4.163 23 C 0.141 3.859 24 H 0.268 0.732 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.673 -10.326 6.273 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.376 5.376 12 C -0.003 4.003 13 C -0.165 4.165 14 C -0.148 4.148 15 C 0.049 3.951 16 H 0.062 0.938 17 O -0.294 6.294 18 C 0.005 3.995 19 C -0.196 4.196 20 C -0.180 4.180 21 C -0.176 4.176 22 C -0.203 4.203 23 C 0.015 3.985 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.711 -10.169 6.361 16.764 hybrid contribution 0.784 0.681 -0.155 1.050 sum 12.495 -9.488 6.206 16.872 Atomic orbital electron populations 1.70019 1.07054 1.27197 1.35414 1.25725 0.94565 1.00244 0.92625 0.86442 0.80283 0.81683 0.78806 1.19770 1.20490 1.18862 1.21022 0.93660 0.89221 1.53901 0.90932 1.18301 0.86972 0.82455 0.76265 1.90584 1.14513 1.86326 1.54722 1.47738 1.04540 1.06180 1.79161 1.21309 0.97189 0.85510 0.96277 1.21645 1.00583 0.98019 0.96218 1.21107 0.94662 1.01424 0.97631 1.21105 0.94011 0.96854 0.83120 0.93811 1.88027 1.24075 1.85695 1.31554 1.23669 0.83558 0.94659 0.97570 1.23523 0.98025 0.97730 1.00321 1.22678 0.97083 0.96932 1.01277 1.23191 0.98279 0.96778 0.99319 1.21832 1.00810 0.99174 0.98440 1.20998 0.82624 1.00687 0.94198 0.92171 0.90143 0.94500 0.92565 0.91356 0.91828 0.90272 0.89922 0.89439 0.91674 0.90251 0.91060 0.91205 0.89257 0.92299 0.89632 0.93591 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.02 11.84 55.55 0.66 -22.37 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.90 20.15 29.56 -169.99 -5.02 15.13 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -15.01 8.38 -35.63 -0.30 -15.31 16 8 H 0.07 1.84 5.95 -52.49 -0.31 1.53 16 9 C 0.55 15.62 7.54 -12.99 -0.10 15.53 16 10 O -0.58 -18.67 14.36 5.20 0.07 -18.60 16 11 N -0.64 -14.30 2.25 -174.41 -0.39 -14.70 16 12 C 0.12 2.36 6.03 -3.12 -0.02 2.34 16 13 C -0.13 -1.93 5.71 -27.48 -0.16 -2.09 16 14 C -0.11 -1.83 5.15 -28.02 -0.14 -1.98 16 15 C 0.11 1.67 1.99 -29.79 -0.06 1.61 16 16 H 0.04 0.62 6.84 -51.93 -0.36 0.27 16 17 O -0.37 -5.88 9.82 -35.23 -0.35 -6.23 16 18 C 0.06 0.78 3.95 -25.92 -0.10 0.68 16 19 C -0.16 -1.64 7.93 -25.83 -0.20 -1.85 16 20 C -0.14 -1.27 8.09 -25.83 -0.21 -1.48 16 21 C -0.14 -1.50 7.91 -25.92 -0.21 -1.71 16 22 C -0.16 -2.84 5.15 -28.59 -0.15 -2.98 16 23 C 0.14 2.61 5.02 -4.09 -0.02 2.59 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 25 H 0.08 1.79 7.02 -51.93 -0.36 1.42 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 30 H 0.08 1.60 7.48 -51.93 -0.39 1.21 16 31 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.90 8.02 -51.93 -0.42 0.49 16 39 H 0.09 1.79 7.90 -51.93 -0.41 1.38 16 40 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.08 1.60 6.12 -51.93 -0.32 1.28 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -33.09 321.45 -8.65 -41.74 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.70 Total: 2.47 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.76 Total: -2.29 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.27 Total: -37.06 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.27 Total: -24.83 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.09 -8.65 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871328973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.192 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds