Wall clock time and date at job start Mon Mar 30 2020 19:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47302 * 270.00602 * 3 2 1 5 5 H 1.48505 * 109.46973 * 30.00823 * 3 2 1 6 6 H 1.48502 * 109.46679 * 150.00441 * 3 2 1 7 7 C 1.40042 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46382 * 120.00063 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99754 * 5.00074 * 9 7 2 11 11 N 1.34770 * 120.00121 * 184.72239 * 9 7 2 12 12 C 1.47603 * 118.64416 * 174.79482 * 11 9 7 13 13 C 1.53605 * 112.34096 * 222.04262 * 12 11 9 14 14 C 1.50877 * 109.95589 * 40.83400 * 13 12 11 15 15 C 1.52572 * 109.35702 * 268.02831 * 14 13 12 16 16 H 1.08998 * 108.51155 * 323.75155 * 15 14 13 17 17 O 1.42900 * 108.38909 * 206.17724 * 15 14 13 18 18 C 1.42899 * 114.00275 * 145.30784 * 17 15 14 19 19 C 1.53783 * 113.61685 * 249.13632 * 18 17 15 20 20 C 1.53953 * 87.01771 * 220.04888 * 19 18 17 21 21 C 1.53773 * 87.11538 * 25.36141 * 20 19 18 22 22 C 1.47090 * 114.32712 * 85.00774 * 15 14 13 23 23 C 1.44578 * 118.64326 * 355.06819 * 11 9 7 24 24 H 0.97005 * 119.99953 * 359.97438 * 1 2 3 25 25 H 1.09004 * 108.94926 * 342.84038 * 12 11 9 26 26 H 1.08996 * 108.94959 * 101.47249 * 12 11 9 27 27 H 1.08999 * 109.50770 * 280.63642 * 13 12 11 28 28 H 1.08998 * 109.26409 * 160.87113 * 13 12 11 29 29 H 1.08998 * 109.49330 * 148.06105 * 14 13 12 30 30 H 1.09007 * 109.51010 * 27.99909 * 14 13 12 31 31 H 1.09005 * 112.84812 * 20.33494 * 18 17 15 32 32 H 1.08996 * 113.61308 * 334.56823 * 19 18 17 33 33 H 1.09001 * 113.61141 * 105.46980 * 19 18 17 34 34 H 1.09006 * 113.53406 * 270.80932 * 20 19 18 35 35 H 1.08995 * 113.74531 * 139.94440 * 20 19 18 36 36 H 1.09007 * 113.61758 * 220.09111 * 21 20 19 37 37 H 1.08999 * 113.69329 * 89.19815 * 21 20 19 38 38 H 1.09005 * 109.32711 * 176.93808 * 22 15 14 39 39 H 1.09003 * 109.32783 * 57.46747 * 22 15 14 40 40 H 1.09007 * 109.45110 * 209.28764 * 23 11 9 41 41 H 1.08996 * 109.45227 * 329.20836 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0466 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5384 1.4401 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4825 -0.0919 11 7 1.9455 -3.6457 0.0950 12 6 1.1739 -4.8987 0.2095 13 6 1.7755 -5.8626 1.2432 14 6 2.2324 -5.0944 2.4588 15 6 3.6988 -4.7081 2.2911 16 1 4.2137 -5.5193 1.7765 17 8 4.2766 -4.5575 3.5894 18 6 5.6437 -4.9660 3.6682 19 6 5.8587 -6.2410 4.5008 20 6 7.1221 -5.5643 5.0628 21 6 6.4489 -4.2189 4.7445 22 6 3.9153 -3.4643 1.5364 23 6 3.3910 -3.6162 0.0872 24 1 -0.4850 0.8401 0.0004 25 1 0.1515 -4.6593 0.5021 26 1 1.1557 -5.3932 -0.7617 27 1 2.6263 -6.3831 0.8036 28 1 1.0198 -6.5904 1.5387 29 1 2.1195 -5.7171 3.3462 30 1 1.6291 -4.1930 2.5677 31 1 6.1344 -4.9919 2.6952 32 1 5.0842 -6.4097 5.2489 33 1 6.0670 -7.1255 3.8989 34 1 8.0178 -5.7550 4.4715 35 1 7.2743 -5.7350 6.1285 36 1 7.1330 -3.4733 4.3391 37 1 5.8358 -3.8324 5.5587 38 1 4.9813 -3.2377 1.5125 39 1 3.3866 -2.6475 2.0277 40 1 3.7707 -4.5441 -0.3407 41 1 3.7336 -2.7733 -0.5130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871328973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:08 Heat of formation + Delta-G solvation = -87.966373 kcal Electronic energy + Delta-G solvation = -21403.458220 eV Core-core repulsion = 18282.940033 eV Total energy + Delta-G solvation = -3120.518188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95621 -39.83698 -38.10445 -36.26564 -34.66896 -33.96335 -32.53797 -28.75109 -27.23405 -26.49669 -25.98746 -25.15974 -22.99612 -21.58104 -20.57745 -20.25846 -18.47554 -18.32822 -17.63505 -16.62636 -16.40037 -16.19769 -15.88829 -15.60891 -15.46058 -14.70110 -14.44254 -14.15520 -13.62167 -13.59235 -13.36327 -13.32092 -12.97547 -12.84220 -12.70920 -12.63315 -12.46574 -12.15713 -12.03127 -11.99809 -11.84544 -11.64956 -11.42432 -11.31142 -11.15885 -10.91795 -10.25029 -9.75385 -9.02846 -8.27408 -6.80389 1.37950 1.39456 1.54015 2.23404 2.46792 2.79834 2.89273 3.63275 3.65975 3.74419 3.82961 3.97564 4.01872 4.05196 4.18224 4.23825 4.33302 4.39829 4.53400 4.64453 4.73670 4.75495 4.84531 4.89436 4.91064 4.99434 5.06798 5.07665 5.09492 5.15920 5.25486 5.32355 5.35694 5.38160 5.45218 5.52200 5.85647 6.21144 6.45728 6.51208 6.90185 7.46214 8.50001 8.69642 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.005699 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.731804 B = 4911.920293 C = 5961.817430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.537 3.463 10 O -0.635 6.635 11 N -0.637 5.637 12 C 0.117 3.883 13 C -0.111 4.111 14 C -0.108 4.108 15 C 0.109 3.891 16 H 0.075 0.925 17 O -0.397 6.397 18 C 0.047 3.953 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.145 4.145 22 C -0.152 4.152 23 C 0.136 3.864 24 H 0.272 0.728 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.151 -11.611 6.377 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.599 4.599 8 H 0.110 0.890 9 C 0.342 3.658 10 O -0.523 6.523 11 N -0.372 5.372 12 C -0.006 4.006 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.052 3.948 16 H 0.093 0.907 17 O -0.316 6.316 18 C -0.010 4.010 19 C -0.193 4.193 20 C -0.166 4.166 21 C -0.182 4.182 22 C -0.191 4.191 23 C 0.011 3.989 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.248 -11.507 6.475 20.170 hybrid contribution -0.285 1.005 -0.160 1.057 sum 14.963 -10.502 6.314 19.341 Atomic orbital electron populations 1.70202 1.09512 1.28673 1.37010 1.26958 0.95433 1.04867 0.91357 0.85141 0.78908 0.75574 0.79479 1.18418 1.20037 1.17237 1.21507 0.94718 0.89797 1.53862 0.89039 1.18702 0.86569 0.84549 0.75933 1.90530 1.16840 1.87653 1.57228 1.47580 1.06237 1.05644 1.77761 1.21468 0.95376 0.85225 0.98535 1.21580 1.02180 0.96967 0.94208 1.21070 0.94907 0.99634 0.99008 1.20995 0.93599 0.96685 0.83528 0.90674 1.88021 1.26139 1.86227 1.31255 1.24062 0.82027 0.96107 0.98810 1.23483 0.98375 0.97498 0.99928 1.22668 0.96998 0.94760 1.02184 1.23233 0.98335 0.98045 0.98629 1.21708 1.01466 0.98669 0.97245 1.21219 0.80150 1.02308 0.95198 0.91810 0.94127 0.92955 0.89227 0.89054 0.90401 0.95279 0.88524 0.90493 0.90185 0.88444 0.90169 0.90586 0.90726 0.89811 0.94237 0.89507 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.64 11.84 21.83 0.26 -51.38 16 2 C 0.03 1.62 5.50 85.30 0.47 2.09 16 3 Si 0.99 41.86 29.56 68.60 2.03 43.89 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.56 -32.11 8.38 24.83 0.21 -31.90 16 8 H 0.09 4.68 5.95 -2.91 -0.02 4.67 16 9 C 0.54 31.66 7.54 86.36 0.65 32.31 16 10 O -0.63 -43.59 14.36 -4.30 -0.06 -43.65 16 11 N -0.64 -28.97 2.25 -823.94 -1.85 -30.83 16 12 C 0.12 4.60 6.03 86.37 0.52 5.12 16 13 C -0.11 -3.16 5.71 30.11 0.17 -2.99 16 14 C -0.11 -3.51 5.15 29.76 0.15 -3.35 16 15 C 0.11 3.20 1.99 28.61 0.06 3.25 16 16 H 0.08 1.77 6.84 -2.39 -0.02 1.76 16 17 O -0.40 -11.84 9.82 -148.98 -1.46 -13.30 16 18 C 0.05 1.03 3.95 31.12 0.12 1.16 16 19 C -0.16 -2.74 7.93 31.18 0.25 -2.49 16 20 C -0.13 -1.88 8.09 31.18 0.25 -1.63 16 21 C -0.14 -2.84 7.91 31.12 0.25 -2.60 16 22 C -0.15 -5.09 5.15 29.39 0.15 -4.93 16 23 C 0.14 4.84 5.02 87.37 0.44 5.28 16 24 H 0.27 15.51 8.29 -92.70 -0.77 14.74 16 25 H 0.04 1.90 7.02 -2.38 -0.02 1.89 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.01 7.32 -2.39 -0.02 2.00 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 30 H 0.03 1.22 7.48 -2.38 -0.02 1.20 16 31 H 0.10 1.82 7.75 -2.38 -0.02 1.80 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.36 8.02 -2.38 -0.02 2.35 16 39 H 0.04 1.69 7.90 -2.39 -0.02 1.67 16 40 H 0.09 2.42 8.07 -2.38 -0.02 2.40 16 41 H 0.07 2.68 6.12 -2.39 -0.01 2.66 16 Total: -1.00 -77.78 321.45 3.60 -74.18 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.00 Total: 21.77 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 3.69 Total: -0.69 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.59 Total: -82.20 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.52 Total: -56.95 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -77.78 3.60 -74.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871328973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.784 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds