Wall clock time and date at job start Mon Mar 30 2020 19:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48496 * 109.47009 * 239.99832 * 3 2 1 5 5 H 1.48498 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00273 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52997 * 115.54978 * 179.63367 * 14 13 11 16 16 H 1.08994 * 109.48384 * 205.55864 * 15 14 13 17 17 C 1.53092 * 109.48382 * 325.58511 * 15 14 13 18 18 C 1.53170 * 109.16648 * 177.59117 * 17 15 14 19 19 C 1.53177 * 109.03726 * 303.01473 * 18 17 15 20 20 C 1.53093 * 109.16028 * 56.97925 * 19 18 17 21 21 O 1.42897 * 109.41673 * 302.39198 * 20 19 18 22 22 C 1.53004 * 117.50127 * 33.92577 * 14 13 11 23 23 C 1.53003 * 117.49794 * 325.30246 * 14 13 11 24 24 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 26 26 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 27 27 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 28 28 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09007 * 109.51965 * 297.49480 * 17 15 14 31 31 H 1.09000 * 109.52342 * 57.67923 * 17 15 14 32 32 H 1.09001 * 109.54521 * 62.88293 * 18 17 15 33 33 H 1.09004 * 109.54539 * 183.06162 * 18 17 15 34 34 H 1.08998 * 109.52679 * 176.88722 * 19 18 17 35 35 H 1.08998 * 109.51926 * 297.01626 * 19 18 17 36 36 H 1.09002 * 109.47827 * 62.38117 * 20 19 18 37 37 H 1.09001 * 109.47895 * 182.40749 * 20 19 18 38 38 H 1.08999 * 117.49514 * 359.97438 * 22 14 13 39 39 H 1.08996 * 117.49834 * 145.02501 * 22 14 13 40 40 H 1.09002 * 117.49609 * 214.97732 * 23 14 13 41 41 H 1.08996 * 117.49833 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.2989 -8.6647 -0.0152 16 1 1.7399 -9.4863 -0.4629 17 6 3.5691 -8.4076 -0.8303 18 6 4.4578 -9.6542 -0.7832 19 6 4.7641 -9.9945 0.6786 20 6 3.4478 -10.1903 1.4354 21 8 2.6561 -9.0058 1.3258 22 6 0.1087 -7.4500 -0.7716 23 6 0.1101 -7.4588 0.7584 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 3.3007 -8.1904 -1.8642 31 1 4.1080 -7.5598 -0.4072 32 1 3.9381 -10.4904 -1.2510 33 1 5.3883 -9.4590 -1.3162 34 1 5.3503 -10.9123 0.7238 35 1 5.3281 -9.1793 1.1318 36 1 2.9039 -11.0321 1.0069 37 1 3.6589 -10.3906 2.4859 38 1 -0.2181 -6.5367 -1.2689 39 1 -0.1464 -8.3798 -1.2800 40 1 -0.1441 -8.3945 1.2564 41 1 -0.2153 -6.5517 1.2677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887088401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:07 Heat of formation + Delta-G solvation = -93.216689 kcal Electronic energy + Delta-G solvation = -20738.879925 eV Core-core repulsion = 17618.134066 eV Total energy + Delta-G solvation = -3120.745859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61392 -40.08961 -37.60081 -35.53643 -34.65660 -34.08378 -32.63776 -31.83538 -27.82106 -26.38205 -24.75717 -24.03186 -23.31085 -21.62794 -21.39830 -20.48990 -18.96710 -18.13876 -17.22499 -16.96404 -16.50593 -16.41758 -16.22685 -15.66854 -15.41698 -15.05842 -14.60399 -14.58575 -14.32335 -14.17236 -13.56770 -13.44548 -13.22072 -12.81059 -12.66592 -12.52013 -12.27557 -12.18649 -12.02562 -11.85242 -11.83859 -11.63473 -11.36338 -11.31075 -11.16932 -10.56171 -10.51105 -10.35876 -9.64471 -8.18219 -6.32541 1.41544 1.46265 1.53998 1.63373 2.08690 2.43104 2.53028 3.14557 3.16400 3.52959 3.63574 3.92630 3.93323 4.06848 4.08354 4.18959 4.23460 4.26975 4.50237 4.53253 4.54391 4.63323 4.73411 4.76597 4.88135 4.92401 5.03679 5.06339 5.09007 5.16349 5.23099 5.33154 5.40709 5.47969 5.59985 5.62689 5.84813 6.17331 6.29930 6.58857 6.85543 7.33579 7.37880 8.94224 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031520 B = 0.003767 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.116524 B = 7430.281862 C = 7954.418344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.046 3.954 10 C -0.119 4.119 11 C 0.509 3.491 12 O -0.570 6.570 13 N -0.687 5.687 14 C 0.103 3.897 15 C 0.137 3.863 16 H 0.089 0.911 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.155 4.155 20 C 0.053 3.947 21 O -0.397 6.397 22 C -0.168 4.168 23 C -0.177 4.177 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.019 1.019 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.415 0.585 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -24.260 -1.210 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.450 6.450 13 N -0.339 5.339 14 C 0.016 3.984 15 C 0.079 3.921 16 H 0.107 0.893 17 C -0.189 4.189 18 C -0.156 4.156 19 C -0.193 4.193 20 C -0.023 4.023 21 O -0.317 6.317 22 C -0.206 4.206 23 C -0.216 4.216 24 H 0.072 0.928 25 H 0.003 0.997 26 H -0.001 1.001 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.254 0.746 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.768 -24.037 -1.048 26.360 hybrid contribution 0.186 1.118 -0.027 1.134 sum 10.955 -22.919 -1.075 25.425 Atomic orbital electron populations 1.70174 1.08302 1.27880 1.51369 1.26137 0.95729 1.03936 0.94573 0.85368 0.78061 0.77311 0.79474 1.18610 1.21269 1.18770 1.21686 0.93966 0.91682 1.50996 0.90718 1.18650 0.93591 0.92261 0.94703 1.21639 0.99411 0.90249 1.04584 1.21321 0.88100 0.86348 0.74407 1.90626 1.16046 1.88093 1.50186 1.45351 1.10442 1.03291 1.74842 1.20705 0.86655 0.84867 1.06216 1.21573 0.94313 0.92374 0.83879 0.89301 1.22200 0.95984 0.99742 1.00998 1.21593 1.00213 0.97018 0.96767 1.22198 0.97949 1.03234 0.95924 1.22796 0.90952 0.86532 1.01993 1.87997 1.71694 1.45710 1.26283 1.23414 0.98468 1.03734 0.95001 1.23174 1.00350 1.02888 0.95143 0.92845 0.99746 1.00054 0.88258 0.87813 0.74621 0.89848 0.91386 0.90658 0.90223 0.89007 0.91781 0.91940 0.88123 0.90076 0.85754 0.86971 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.24 13.29 21.45 0.28 -59.95 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 9 C 0.05 2.59 4.26 29.85 0.13 2.72 16 10 C -0.12 -4.95 5.64 29.85 0.17 -4.78 16 11 C 0.51 20.42 7.53 87.66 0.66 21.09 16 12 O -0.57 -27.81 11.46 -3.04 -0.03 -27.84 16 13 N -0.69 -20.46 5.39 -422.91 -2.28 -22.73 16 14 C 0.10 2.79 2.73 3.61 0.01 2.80 16 15 C 0.14 2.63 2.81 30.62 0.09 2.72 16 16 H 0.09 1.41 7.90 -2.39 -0.02 1.39 16 17 C -0.15 -2.31 5.00 30.68 0.15 -2.16 16 18 C -0.12 -1.28 6.03 30.71 0.19 -1.10 16 19 C -0.16 -1.69 6.14 30.68 0.19 -1.51 16 20 C 0.05 0.72 6.84 72.01 0.49 1.21 16 21 O -0.40 -8.38 10.32 -148.98 -1.54 -9.92 16 22 C -0.17 -4.84 9.36 30.60 0.29 -4.55 16 23 C -0.18 -5.52 9.35 30.60 0.29 -5.23 16 24 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 25 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 26 H -0.02 -1.22 8.10 -2.38 -0.02 -1.24 16 27 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.41 9.81 6.58 -92.71 -0.61 9.20 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 1.10 6.30 -2.39 -0.02 1.09 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 2.98 6.35 -2.39 -0.02 2.97 16 39 H 0.12 2.63 8.05 -2.39 -0.02 2.61 16 40 H 0.11 2.92 8.14 -2.39 -0.02 2.91 16 41 H 0.07 2.89 6.40 -2.39 -0.02 2.88 16 Total: -1.00 -76.53 326.82 2.20 -74.33 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.40 Total: 19.33 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.34 Total: -20.05 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.99 Total: -82.69 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.57 Total: -37.76 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.53 2.20 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887088401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.885 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds