Wall clock time and date at job start Mon Mar 30 2020 19:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.70411 * 2 1 4 4 C 1.53002 * 117.50394 * 14.25786 * 3 2 1 5 5 C 1.53000 * 117.50201 * 305.59423 * 3 2 1 6 6 C 1.53710 * 109.84049 * 239.28297 * 2 1 3 7 7 O 1.42955 * 109.14653 * 292.85630 * 6 2 1 8 8 C 1.42959 * 114.16712 * 297.28514 * 7 6 2 9 9 C 1.53298 * 109.22221 * 62.58261 * 8 7 6 10 10 N 1.47149 * 108.38666 * 307.69826 * 9 8 7 11 11 C 1.34774 * 120.98385 * 230.51172 * 10 9 8 12 12 O 1.21287 * 120.00029 * 176.14960 * 11 10 9 13 13 C 1.50700 * 119.99933 * 356.14979 * 11 10 9 14 14 C 1.53004 * 109.47064 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47064 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99693 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00183 * 179.72297 * 17 15 14 19 19 Si 1.86801 * 119.99959 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47248 * 269.72565 * 19 17 15 21 21 H 1.48500 * 109.47063 * 29.72846 * 19 17 15 22 22 H 1.48500 * 109.47093 * 149.72613 * 19 17 15 23 23 H 1.09005 * 109.47568 * 299.46336 * 1 2 3 24 24 H 1.09003 * 109.47307 * 59.46724 * 1 2 3 25 25 H 1.09002 * 109.46981 * 179.46787 * 1 2 3 26 26 H 1.09009 * 115.54882 * 159.92986 * 3 2 1 27 27 H 1.08999 * 117.49392 * 0.02562 * 4 3 2 28 28 H 1.08998 * 117.50051 * 145.02432 * 4 3 2 29 29 H 1.09004 * 117.50390 * 214.98489 * 5 3 2 30 30 H 1.09005 * 117.49358 * 0.02562 * 5 3 2 31 31 H 1.09003 * 109.65740 * 172.88536 * 6 2 1 32 32 H 1.08997 * 109.48113 * 52.72069 * 6 2 1 33 33 H 1.09003 * 109.51390 * 302.66106 * 8 7 6 34 34 H 1.09005 * 109.55485 * 182.53215 * 8 7 6 35 35 H 1.08996 * 109.68430 * 187.97305 * 9 8 7 36 36 H 1.09005 * 109.71303 * 67.44052 * 9 8 7 37 37 H 1.09000 * 109.47287 * 60.00058 * 13 11 10 38 38 H 1.09002 * 109.46922 * 299.99911 * 13 11 10 39 39 H 1.09000 * 109.47020 * 59.99896 * 14 13 11 40 40 H 1.09002 * 109.46759 * 300.00089 * 14 13 11 41 41 H 0.97005 * 120.00276 * 180.27113 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4404 0.0000 4 6 1.0458 2.5491 0.3342 5 6 1.5404 2.3719 -1.1035 6 6 2.0517 -0.7385 -1.2430 7 8 1.7174 -2.1246 -1.1396 8 6 2.3219 -2.7911 -0.0287 9 6 1.8191 -2.1586 1.2740 10 7 2.0256 -0.7039 1.1935 11 6 2.6453 -0.0351 2.1860 12 8 2.8685 1.1515 2.0707 13 6 3.0611 -0.7617 3.4392 14 6 3.7385 0.2204 4.3971 15 6 4.1537 -0.5060 5.6505 16 1 3.9539 -1.5623 5.7537 17 6 4.7876 0.1781 6.6659 18 7 5.1450 -0.4547 7.7619 19 14 5.1325 2.0053 6.4876 20 1 6.4678 2.1988 5.8675 21 1 4.0925 2.6236 5.6266 22 1 5.1112 2.6460 7.8271 23 1 -0.3634 0.5055 0.8948 24 1 -0.3634 0.5221 -0.8852 25 1 -0.3633 -1.0276 -0.0095 26 1 3.0740 1.5715 0.3375 27 1 0.0204 2.2522 0.5545 28 1 1.4160 3.4097 0.8912 29 1 2.2358 3.1161 -1.4918 30 1 0.8400 1.9585 -1.8293 31 1 3.1343 -0.6288 -1.3073 32 1 1.5896 -0.3182 -2.1362 33 1 3.4055 -2.6889 -0.0885 34 1 2.0543 -3.8477 -0.0475 35 1 2.3782 -2.5625 2.1180 36 1 0.7578 -2.3723 1.4008 37 1 3.7592 -1.5584 3.1826 38 1 2.1814 -1.1901 3.9195 39 1 3.0408 1.0175 4.6537 40 1 4.6183 0.6484 3.9164 41 1 5.5875 0.0275 8.4780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890588920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:32 Heat of formation + Delta-G solvation = -59.111281 kcal Electronic energy + Delta-G solvation = -21663.159884 eV Core-core repulsion = 18543.892947 eV Total energy + Delta-G solvation = -3119.266937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98100 -39.41464 -38.26250 -35.72007 -35.55342 -33.44142 -32.57472 -29.88297 -28.18053 -27.43712 -25.37099 -23.69476 -23.07944 -22.60917 -21.15095 -19.70279 -18.92884 -17.65977 -17.58556 -17.01533 -16.86782 -16.48239 -16.33722 -15.84543 -15.54000 -15.10087 -14.91536 -14.65265 -14.31122 -13.82833 -13.67330 -13.43353 -13.15530 -12.94817 -12.92613 -12.36295 -12.28691 -12.16089 -12.03842 -11.99215 -11.81828 -11.75021 -11.42124 -11.33284 -11.14209 -11.04667 -10.79974 -9.79851 -9.44968 -8.33464 -6.36154 1.30326 1.32707 1.47392 1.66989 1.85881 2.32583 2.82518 2.97733 3.02414 3.52858 3.66483 3.87671 3.94027 4.01937 4.14768 4.19391 4.24520 4.33859 4.36006 4.38977 4.45244 4.57153 4.64636 4.73663 4.80843 4.85519 4.87763 4.92656 4.98227 5.04131 5.23328 5.28369 5.30054 5.39002 5.42498 5.58826 5.70201 6.09735 6.21551 6.38892 6.70211 7.27093 7.29301 8.82261 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.005570 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.013415 B = 5025.788539 C = 5884.215701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.165 3.835 3 C -0.144 4.144 4 C -0.180 4.180 5 C -0.166 4.166 6 C 0.067 3.933 7 O -0.384 6.384 8 C 0.047 3.953 9 C 0.065 3.935 10 N -0.612 5.612 11 C 0.514 3.486 12 O -0.557 6.557 13 C -0.115 4.115 14 C 0.010 3.990 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.263 1.263 22 H -0.278 1.278 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 -2.150 -21.517 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.081 3.919 3 C -0.162 4.162 4 C -0.217 4.217 5 C -0.204 4.204 6 C -0.010 4.010 7 O -0.302 6.302 8 C -0.030 4.030 9 C -0.057 4.057 10 N -0.346 5.346 11 C 0.304 3.696 12 O -0.435 6.435 13 C -0.155 4.155 14 C -0.028 4.028 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.182 4.182 18 N -0.584 5.584 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.187 1.187 22 H -0.204 1.204 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.889 -1.611 -21.534 23.751 hybrid contribution 0.678 0.957 1.059 1.581 sum -9.211 -0.654 -20.474 22.461 Atomic orbital electron populations 1.22131 0.92940 1.02983 1.02526 1.20986 0.94938 0.90623 0.85347 1.22429 1.00460 0.89784 1.03537 1.22904 0.99278 1.00374 0.99114 1.23215 1.03658 1.02269 0.91236 1.23034 0.99683 0.81253 0.97047 1.87930 1.72232 1.21959 1.48056 1.23141 0.97336 0.98267 0.84251 1.22705 1.03562 0.78702 1.00726 1.48356 1.58259 1.08952 1.19047 1.21149 0.76366 0.87310 0.84746 1.90636 1.56052 1.17052 1.79798 1.21530 1.02131 0.99534 0.92278 1.19181 0.95339 0.94943 0.93352 1.21421 1.37601 0.96736 1.00865 0.93167 1.25766 0.95064 1.02558 0.94829 1.70017 1.42451 1.38321 1.07567 0.85852 0.79440 0.80917 0.77628 1.19415 1.18708 1.20362 0.93373 0.89556 0.91133 0.88123 0.88244 0.91271 0.88560 0.86703 0.93256 0.85795 0.92809 0.84727 0.87662 0.89287 0.88399 0.88636 0.97401 0.97388 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.20 71.98 0.52 -2.41 16 2 C 0.17 3.86 0.89 3.72 0.00 3.86 16 3 C -0.14 -3.89 3.28 -10.79 -0.04 -3.92 16 4 C -0.18 -4.72 9.31 30.62 0.28 -4.44 16 5 C -0.17 -3.35 9.66 30.62 0.30 -3.05 16 6 C 0.07 1.31 5.52 72.22 0.40 1.70 16 7 O -0.38 -7.43 10.37 -148.98 -1.54 -8.97 16 8 C 0.05 0.78 6.98 72.08 0.50 1.29 16 9 C 0.07 1.29 6.13 86.36 0.53 1.82 16 10 N -0.61 -16.42 2.71 -769.89 -2.09 -18.50 16 11 C 0.51 18.33 7.61 87.66 0.67 19.00 16 12 O -0.56 -23.41 11.64 -3.05 -0.04 -23.45 16 13 C -0.12 -4.38 4.06 29.85 0.12 -4.26 16 14 C 0.01 0.49 3.33 29.85 0.10 0.59 16 15 C -0.53 -30.47 9.66 25.60 0.25 -30.22 16 16 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 17 C 0.02 0.93 5.47 84.65 0.46 1.39 16 18 N -0.94 -59.06 13.96 21.44 0.30 -58.76 16 19 Si 0.94 46.97 27.47 68.60 1.88 48.86 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 23 H 0.05 1.11 6.77 -2.38 -0.02 1.09 16 24 H 0.09 1.35 6.94 -2.39 -0.02 1.33 16 25 H 0.07 1.30 7.21 -2.39 -0.02 1.29 16 26 H 0.10 3.52 5.96 -3.41 -0.02 3.49 16 27 H 0.10 2.41 5.92 -2.39 -0.01 2.40 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 1.69 7.26 -2.38 -0.02 1.67 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.11 2.02 6.07 -2.39 -0.01 2.00 16 36 H 0.09 1.54 7.65 -2.38 -0.02 1.52 16 37 H 0.10 3.39 7.50 -2.39 -0.02 3.37 16 38 H 0.10 3.39 8.13 -2.39 -0.02 3.37 16 39 H 0.01 0.40 7.15 -2.39 -0.02 0.38 16 40 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 41 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -71.26 315.24 3.56 -67.70 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.95 Total: 11.79 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.10 Total: -18.66 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.79 Total: -77.27 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.58 Total: -32.42 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.88 Total: 48.86 kcal Total: -71.26 3.56 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890588920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.584 kcal (2) G-P(sol) polarization free energy of solvation -71.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds