Wall clock time and date at job start Mon Mar 30 2020 19:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00320 * 2 1 4 4 C 1.50706 * 119.99868 * 180.02562 * 2 1 3 5 5 H 1.08994 * 110.32800 * 132.56582 * 4 2 1 6 6 O 1.44428 * 110.36965 * 10.32291 * 4 2 1 7 7 C 1.44428 * 105.27310 * 200.65422 * 6 4 2 8 8 C 1.54487 * 104.80039 * 40.51178 * 7 6 4 9 9 C 1.54502 * 104.18418 * 335.95284 * 8 7 6 10 10 H 1.09003 * 110.50934 * 241.42273 * 9 8 7 11 11 C 1.50700 * 110.51452 * 118.71637 * 9 8 7 12 12 O 1.21283 * 119.99298 * 323.77096 * 11 9 8 13 13 N 1.34773 * 120.00584 * 143.76901 * 11 9 8 14 14 C 1.46494 * 120.00235 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47263 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47125 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99982 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00141 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99688 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46620 * 90.00529 * 21 19 17 23 23 H 1.48504 * 109.46909 * 210.00274 * 21 19 17 24 24 H 1.48494 * 109.47515 * 330.00665 * 21 19 17 25 25 H 1.08002 * 120.00158 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00362 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46999 * 274.70154 * 3 2 1 28 28 H 1.09001 * 109.46656 * 34.69961 * 3 2 1 29 29 H 1.08998 * 109.47118 * 154.69965 * 3 2 1 30 30 H 1.08995 * 110.37478 * 281.68088 * 7 6 4 31 31 H 1.09003 * 110.37167 * 159.34158 * 7 6 4 32 32 H 1.08998 * 110.51078 * 94.66819 * 8 7 6 33 33 H 1.09002 * 110.50545 * 217.23539 * 8 7 6 34 34 H 0.96999 * 119.99729 * 359.97438 * 13 11 9 35 35 H 1.09000 * 109.47229 * 300.00040 * 14 13 11 36 36 H 1.09008 * 109.47193 * 60.00021 * 14 13 11 37 37 H 1.09000 * 109.47059 * 300.00180 * 15 14 13 38 38 H 1.08990 * 109.46898 * 59.99805 * 15 14 13 39 39 H 1.09000 * 109.47101 * 299.99912 * 16 15 14 40 40 H 1.09001 * 109.47227 * 59.99635 * 16 15 14 41 41 H 0.96998 * 119.99820 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 1 2.8515 -1.2871 -0.7533 6 8 1.1612 -2.4064 -0.2437 7 6 1.8450 -3.5761 0.2567 8 6 2.5112 -3.1117 1.5709 9 6 2.6612 -1.5835 1.3999 10 1 3.7123 -1.2969 1.4324 11 6 1.8807 -0.8540 2.4628 12 8 0.8167 -1.2946 2.8435 13 7 2.3649 0.2877 2.9904 14 6 1.6063 0.9964 4.0240 15 6 2.3723 2.2510 4.4488 16 6 1.5803 2.9908 5.5287 17 6 2.3344 4.2269 5.9466 18 1 3.2838 4.4611 5.4881 19 6 1.8123 5.0587 6.9143 20 7 0.6566 4.7733 7.4730 21 14 2.7475 6.5905 7.4327 22 1 2.3354 7.7342 6.5799 23 1 2.4446 6.8981 8.8537 24 1 4.2056 6.3568 7.2767 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 2.1723 1.6618 -1.0242 28 1 1.5135 2.0421 0.5850 29 1 3.0498 1.1551 0.4392 30 1 2.6008 -3.9074 -0.4554 31 1 1.1322 -4.3766 0.4548 32 1 1.8725 -3.3397 2.4242 33 1 3.4880 -3.5804 1.6902 34 1 3.2160 0.6398 2.6862 35 1 0.6317 1.2819 3.6281 36 1 1.4711 0.3442 4.8870 37 1 3.3467 1.9651 4.8449 38 1 2.5079 2.9032 3.5862 39 1 0.6058 3.2767 5.1330 40 1 1.4450 2.3383 6.3913 41 1 0.2895 5.3583 8.1541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906570121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:30 Heat of formation + Delta-G solvation = -82.879375 kcal Electronic energy + Delta-G solvation = -20717.967092 eV Core-core repulsion = 17597.669493 eV Total energy + Delta-G solvation = -3120.297599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68218 -38.38462 -35.39950 -35.07507 -33.29247 -32.45270 -31.09756 -28.93605 -27.22413 -26.72013 -24.18427 -23.07339 -21.85372 -20.69867 -19.90558 -18.57900 -17.23410 -16.64812 -16.24819 -15.95635 -15.56290 -15.14134 -14.96291 -14.44900 -14.08442 -13.90747 -13.48410 -13.18799 -13.12630 -12.37361 -12.32891 -12.12237 -11.84537 -11.76967 -11.68065 -11.40180 -11.30558 -10.96339 -10.90538 -10.72550 -10.60271 -10.08216 -9.86897 -9.76210 -9.33419 -9.11980 -9.01306 -8.70822 -8.38171 -6.02658 -4.05883 2.20819 2.78235 3.29848 3.35915 3.37629 3.40870 3.65135 4.24162 4.43275 4.57236 4.67956 4.83915 4.92104 5.02665 5.11697 5.17007 5.33129 5.34222 5.44737 5.50143 5.55474 5.62551 5.75776 5.78773 5.88173 5.95959 6.05044 6.17036 6.46353 6.52455 6.60165 6.65205 6.84693 6.93633 7.00716 7.62690 7.75376 7.75976 7.96092 8.36726 8.47178 9.00857 9.58386 11.08628 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.003584 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.501779 B = 7811.550067 C = 8051.777594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.156 4.156 3 C -0.110 4.110 4 C 0.133 3.867 5 H 0.083 0.917 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.142 4.142 9 C -0.139 4.139 10 H 0.100 0.900 11 C 0.524 3.476 12 O -0.534 6.534 13 N -0.723 5.723 14 C 0.118 3.882 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 -13.740 -16.362 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.074 3.926 5 H 0.101 0.899 6 O -0.279 6.279 7 C -0.028 4.028 8 C -0.180 4.180 9 C -0.161 4.161 10 H 0.118 0.882 11 C 0.309 3.691 12 O -0.411 6.411 13 N -0.374 5.374 14 C -0.004 4.004 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.044 -13.974 -16.023 21.851 hybrid contribution 1.115 1.070 0.384 1.593 sum 6.159 -12.904 -15.639 21.191 Atomic orbital electron populations 1.23749 0.95423 1.02305 0.96736 1.21430 0.95876 0.93737 1.04600 1.20759 0.99889 0.94048 1.02004 1.21662 0.91204 0.86567 0.93131 0.89940 1.89156 1.40768 1.15868 1.82072 1.23375 0.96536 0.89409 0.93476 1.22942 1.02190 0.92490 1.00364 1.22795 1.00826 0.96973 0.95487 0.88169 1.19992 0.86147 0.81011 0.81917 1.90690 1.22228 1.66819 1.61316 1.46214 1.24678 1.25068 1.41443 1.21602 0.95424 0.93888 0.89505 1.21874 0.99317 0.94062 1.00514 1.19025 0.95271 0.94582 0.92497 1.21198 1.05882 1.07745 1.21245 0.92675 1.25029 0.95018 0.98088 0.96310 1.69963 1.18095 1.38004 1.27190 0.86589 0.80176 0.83370 0.77821 1.20653 1.21204 1.19894 0.88434 0.87379 0.91577 0.90974 0.92203 0.92204 0.88789 0.89041 0.90021 0.77117 0.91902 0.91982 0.92835 0.92784 0.96317 0.96330 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 13.59 29.01 0.39 -1.56 16 2 C -0.16 -1.89 3.76 -101.07 -0.38 -2.27 16 3 C -0.11 -1.13 9.59 36.00 0.35 -0.78 16 4 C 0.13 1.45 3.51 -26.94 -0.09 1.36 16 5 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 6 O -0.36 -4.50 9.86 -35.23 -0.35 -4.85 16 7 C 0.05 0.45 7.63 37.94 0.29 0.74 16 8 C -0.14 -1.38 6.58 -25.16 -0.17 -1.54 16 9 C -0.14 -1.49 3.44 -90.04 -0.31 -1.80 16 10 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 11 C 0.52 7.68 5.05 -10.99 -0.06 7.62 16 12 O -0.53 -10.06 16.00 5.56 0.09 -9.97 16 13 N -0.72 -10.14 5.18 -60.29 -0.31 -10.45 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.10 1.23 8.05 -52.49 -0.42 0.80 16 26 H 0.11 1.58 6.95 -52.48 -0.36 1.22 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.06 0.52 7.76 -51.93 -0.40 0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.10 7.08 -51.93 -0.37 0.73 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 4.45 8.11 -40.82 -0.33 4.11 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -32.92 338.57 -7.36 -40.29 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.92 Total: 1.03 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.69 Total: -11.46 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.42 Total: -36.51 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.26 Total: -14.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.92 -7.36 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906570121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.592 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds