Wall clock time and date at job start Mon Mar 30 2020 19:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.05608 * 2 1 4 4 C 1.54265 * 110.03005 * 238.58266 * 2 1 3 5 5 C 1.54885 * 104.19169 * 217.10444 * 4 2 1 6 6 C 1.54962 * 102.77926 * 37.91914 * 5 4 2 7 7 C 1.53872 * 110.03167 * 121.41496 * 2 1 3 8 8 H 1.08994 * 110.03403 * 238.61959 * 7 2 1 9 9 C 1.53002 * 110.03156 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46794 * 184.30782 * 9 7 2 11 11 O 1.21281 * 120.00278 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99573 * 180.02562 * 10 9 7 13 13 C 1.47582 * 134.49046 * 179.97438 * 12 10 9 14 14 C 1.53940 * 86.11560 * 155.35845 * 13 12 10 15 15 O 1.42899 * 113.74480 * 269.15283 * 14 13 12 16 16 C 1.50708 * 113.74121 * 137.95289 * 14 13 12 17 17 H 1.07991 * 119.99789 * 1.92942 * 16 14 13 18 18 C 1.37877 * 120.00008 * 181.92253 * 16 14 13 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.47806 * 134.45885 * 359.86567 * 12 10 9 25 25 H 1.09000 * 109.46888 * 298.58772 * 1 2 3 26 26 H 1.09003 * 109.47108 * 58.58008 * 1 2 3 27 27 H 1.08992 * 109.46905 * 178.58539 * 1 2 3 28 28 H 1.08997 * 110.48515 * 335.78353 * 4 2 1 29 29 H 1.09000 * 110.48566 * 98.29459 * 4 2 1 30 30 H 1.09005 * 110.75360 * 156.25812 * 5 4 2 31 31 H 1.09000 * 110.76141 * 279.44486 * 5 4 2 32 32 H 1.09004 * 110.53394 * 203.42853 * 6 5 4 33 33 H 1.08998 * 110.47881 * 80.76301 * 6 5 4 34 34 H 1.09000 * 109.47559 * 64.31092 * 9 7 2 35 35 H 1.08997 * 109.47193 * 304.30734 * 9 7 2 36 36 H 1.09006 * 113.76710 * 41.05584 * 13 12 10 37 37 H 1.09004 * 113.87337 * 269.67195 * 13 12 10 38 38 H 0.96702 * 114.00346 * 178.07343 * 15 14 13 39 39 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 40 40 H 1.09007 * 113.76641 * 90.37992 * 24 12 10 41 41 H 1.09003 * 113.83940 * 318.91953 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5007 -0.7191 6 6 2.8882 -1.9406 0.7046 7 6 2.0571 -0.7535 1.2337 8 1 2.6860 -0.0951 1.8329 9 6 0.8862 -1.2663 2.0745 10 6 1.4137 -1.9089 3.3314 11 8 2.6086 -1.9521 3.5349 12 7 0.5577 -2.4356 4.2293 13 6 0.7123 -3.1211 5.5271 14 6 -0.7160 -2.6364 5.8348 15 8 -0.7645 -1.3668 6.4887 16 6 -1.5783 -3.6754 6.5043 17 1 -1.1654 -4.6423 6.7510 18 6 -2.8942 -3.3914 6.8021 19 7 -3.6465 -4.2979 7.3868 20 14 -3.6085 -1.7191 6.3749 21 1 -3.4092 -0.7895 7.5158 22 1 -5.0607 -1.8574 6.0971 23 1 -2.9236 -1.1807 5.1723 24 6 -0.9132 -2.5566 4.3099 25 1 -0.3633 0.4917 0.9024 26 1 -0.3633 0.5357 -0.8770 27 1 -0.3633 -1.0273 -0.0254 28 1 1.3142 -1.4660 -1.5966 29 1 2.3275 -0.0538 -2.0263 30 1 3.5325 -2.3679 -1.3422 31 1 4.1718 -0.8299 -0.6781 32 1 3.7643 -2.1028 1.3325 33 1 2.2783 -2.8428 0.6586 34 1 0.3209 -2.0007 1.5007 35 1 0.2356 -0.4324 2.3382 36 1 1.4742 -2.6791 6.1693 37 1 0.8008 -4.2045 5.4460 38 1 -1.6607 -1.0451 6.6574 39 1 -4.5724 -4.0982 7.5959 40 1 -1.3034 -3.4739 3.8688 41 1 -1.4473 -1.6647 3.9819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334462607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:49 Heat of formation + Delta-G solvation = -56.352533 kcal Electronic energy + Delta-G solvation = -21192.178010 eV Core-core repulsion = 18073.030702 eV Total energy + Delta-G solvation = -3119.147309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00967 -38.89605 -37.22797 -34.43366 -32.56553 -31.93903 -30.85056 -28.93598 -26.39431 -25.43889 -25.09923 -24.41409 -20.84600 -20.30195 -18.90781 -18.21123 -17.48757 -16.82879 -16.30740 -15.93346 -15.19588 -14.91045 -14.61794 -13.99384 -13.67157 -13.64704 -13.35632 -13.06052 -12.90849 -12.51562 -12.37168 -12.21091 -12.08450 -11.73054 -11.27524 -11.00956 -10.91254 -10.81632 -10.74041 -10.67468 -10.58692 -10.51647 -10.24942 -10.14683 -9.66520 -9.27120 -8.99556 -8.67303 -7.99514 -6.43784 -4.49995 2.97269 2.99258 3.12359 3.14902 3.44240 4.01282 4.50562 4.54683 4.62959 4.67721 4.94985 5.15363 5.19791 5.25911 5.32860 5.41229 5.48932 5.55781 5.58814 5.62897 5.74105 5.79207 5.89112 5.90866 5.98190 6.05503 6.07046 6.10789 6.17975 6.26793 6.33187 6.35154 6.39898 6.51172 6.51593 6.61387 7.19247 8.01800 8.34023 8.50709 8.60287 8.69306 9.13775 10.68503 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.004870 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.620581 B = 5748.468221 C = 6221.975859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.071 4.071 8 H 0.078 0.922 9 C -0.130 4.130 10 C 0.527 3.473 11 O -0.559 6.559 12 N -0.636 5.636 13 C 0.126 3.874 14 C 0.194 3.806 15 O -0.554 6.554 16 C -0.537 4.537 17 H 0.091 0.909 18 C 0.080 3.920 19 N -0.877 5.877 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.255 1.255 24 C 0.064 3.936 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.352 0.648 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 6.900 -14.719 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.090 4.090 8 H 0.096 0.904 9 C -0.169 4.169 10 C 0.317 3.683 11 O -0.438 6.438 12 N -0.371 5.371 13 C 0.004 3.996 14 C 0.153 3.847 15 O -0.364 6.364 16 C -0.575 4.575 17 H 0.109 0.891 18 C -0.125 4.125 19 N -0.512 5.512 20 Si 0.686 3.314 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.181 1.181 24 C -0.060 4.060 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.203 0.797 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.606 6.847 -14.708 17.517 hybrid contribution -1.333 0.851 -0.120 1.586 sum 5.273 7.698 -14.828 17.520 Atomic orbital electron populations 1.22022 0.95203 1.02003 1.01489 1.21805 0.95695 0.99211 0.94536 0.91122 1.22443 0.97502 0.98834 0.96902 1.22523 0.97507 0.99643 0.96777 1.22378 1.00167 0.97195 0.95148 1.21540 0.95351 0.97183 0.94887 0.90395 1.21889 0.99512 1.01347 0.94201 1.20352 0.85701 0.78584 0.83671 1.90623 1.15366 1.60312 1.77533 1.50205 1.08716 1.56581 1.21571 1.23239 0.97708 0.97054 0.81550 1.20572 0.93711 0.82764 0.87618 1.86470 1.31398 1.37695 1.80852 1.21249 0.95125 1.00649 1.40433 0.89124 1.25002 0.96882 0.96816 0.93789 1.69857 1.08074 1.33860 1.39447 0.87355 0.79394 0.84727 0.79945 1.19327 1.20952 1.18063 1.24642 0.79217 1.01144 1.00956 0.92294 0.93070 0.92221 0.91637 0.92085 0.91924 0.91736 0.90805 0.92147 0.89205 0.89142 0.90762 0.88933 0.79665 0.91897 0.88825 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.88 37.16 0.29 -1.17 16 2 C -0.09 -0.98 3.50 -89.50 -0.31 -1.29 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.13 6.36 -25.07 -0.16 -1.29 16 5 C -0.13 -1.30 6.91 -24.70 -0.17 -1.47 16 6 C -0.11 -1.44 5.40 -25.03 -0.14 -1.57 16 7 C -0.07 -0.92 2.55 -89.50 -0.23 -1.15 16 8 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 9 C -0.13 -1.86 3.63 -27.88 -0.10 -1.96 16 10 C 0.53 9.94 7.84 -10.98 -0.09 9.86 16 11 O -0.56 -11.96 15.51 5.56 0.09 -11.87 16 12 N -0.64 -12.65 3.61 -178.11 -0.64 -13.29 16 13 C 0.13 2.65 8.23 -2.97 -0.02 2.62 16 14 C 0.19 4.39 1.06 -90.84 -0.10 4.29 16 15 O -0.55 -12.94 13.35 -35.23 -0.47 -13.41 16 16 C -0.54 -13.75 9.19 -34.44 -0.32 -14.07 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 19 N -0.88 -24.34 13.96 55.43 0.77 -23.57 16 20 Si 0.86 18.53 24.31 -169.99 -4.13 14.40 16 21 H -0.27 -5.66 7.05 56.52 0.40 -5.26 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.26 -5.10 5.16 56.52 0.29 -4.80 16 24 C 0.06 1.25 7.10 -2.83 -0.02 1.23 16 25 H 0.06 0.59 6.63 -51.93 -0.34 0.25 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.59 6.83 -51.93 -0.35 0.23 16 28 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 33 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 34 H 0.09 1.18 6.88 -51.93 -0.36 0.82 16 35 H 0.09 1.23 6.47 -51.93 -0.34 0.90 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 38 H 0.35 7.78 3.57 45.56 0.16 7.95 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 41 H 0.07 1.26 6.83 -51.93 -0.35 0.91 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -29.02 314.97 -7.35 -36.37 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.25 Total: 10.63 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.46 Total: -3.99 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.13 Total: -36.86 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.38 Total: -25.29 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.13 Total: 14.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.02 -7.35 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334462607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.987 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds