Wall clock time and date at job start Mon Mar 30 2020 19:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47407 * 2 1 4 4 C 1.50706 * 109.47207 * 119.99866 * 2 1 3 5 5 H 1.07997 * 119.99829 * 119.99879 * 4 2 1 6 6 C 1.37870 * 119.99781 * 300.00316 * 4 2 1 7 7 N 1.31515 * 120.00582 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99804 * 179.72578 * 6 4 2 9 9 H 1.48499 * 109.47473 * 89.99577 * 8 6 4 10 10 H 1.48504 * 109.47232 * 210.00232 * 8 6 4 11 11 H 1.48509 * 109.46547 * 329.99516 * 8 6 4 12 12 C 1.50697 * 109.47190 * 240.00138 * 2 1 3 13 13 O 1.21285 * 120.00039 * 263.64798 * 12 2 1 14 14 N 1.34775 * 120.00179 * 83.64559 * 12 2 1 15 15 C 1.47151 * 120.97860 * 4.25907 * 14 12 2 16 16 C 1.52884 * 108.60692 * 230.49962 * 15 14 12 17 17 O 1.42963 * 109.30084 * 307.94021 * 16 15 14 18 18 C 1.42963 * 114.16533 * 62.44301 * 17 16 15 19 19 C 1.47155 * 120.98256 * 184.54366 * 14 12 2 20 20 C 1.52996 * 109.68029 * 249.16391 * 19 14 12 21 21 C 1.52999 * 109.68147 * 9.67751 * 19 14 12 22 22 C 1.52991 * 117.50087 * 251.77746 * 21 19 14 23 23 C 1.53000 * 117.49912 * 183.11671 * 21 19 14 24 24 H 1.08999 * 109.46865 * 59.85450 * 1 2 3 25 25 H 1.08993 * 109.47195 * 179.85695 * 1 2 3 26 26 H 1.08998 * 109.46975 * 299.85809 * 1 2 3 27 27 H 0.96993 * 120.00242 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.68321 * 350.27962 * 15 14 12 29 29 H 1.08996 * 109.68279 * 110.83985 * 15 14 12 30 30 H 1.09000 * 109.58586 * 187.92220 * 16 15 14 31 31 H 1.09004 * 109.36249 * 67.81884 * 16 15 14 32 32 H 1.09000 * 109.51329 * 177.49467 * 18 17 16 33 33 H 1.08999 * 109.55315 * 57.37374 * 18 17 16 34 34 H 1.08997 * 109.47572 * 59.99908 * 20 19 14 35 35 H 1.08999 * 109.47336 * 179.97438 * 20 19 14 36 36 H 1.09003 * 109.47380 * 299.99958 * 20 19 14 37 37 H 1.09000 * 115.55022 * 37.45305 * 21 19 14 38 38 H 1.09003 * 117.49982 * 0.02562 * 22 21 19 39 39 H 1.09008 * 117.50263 * 145.01925 * 22 21 19 40 40 H 1.08997 * 117.49876 * 214.98276 * 23 21 19 41 41 H 1.09001 * 117.49934 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3156 -1.1244 4.0080 9 1 3.6256 -0.5556 4.4149 10 1 1.3363 -0.9507 5.1108 11 1 2.4748 -2.5706 3.7106 12 6 2.0323 -0.7104 -1.2305 13 8 2.3441 -1.8809 -1.1701 14 7 2.1352 -0.0450 -2.3980 15 6 1.8520 1.3969 -2.4755 16 6 0.8736 1.6408 -3.6247 17 8 1.3785 1.0276 -4.8133 18 6 1.5115 -0.3932 -4.7277 19 6 2.5280 -0.7402 -3.6340 20 6 3.9230 -0.2806 -4.0625 21 6 2.5341 -2.2514 -3.3956 22 6 3.8932 -2.9508 -3.3293 23 6 2.9899 -3.1469 -4.5494 24 1 -0.3633 0.5161 -0.8887 25 1 -0.3633 -1.0276 -0.0026 26 1 -0.3633 0.5116 0.8912 27 1 0.7089 1.1613 3.4844 28 1 1.4081 1.7347 -1.5391 29 1 2.7765 1.9432 -2.6622 30 1 0.7611 2.7127 -3.7875 31 1 -0.0941 1.2064 -3.3738 32 1 1.8580 -0.7848 -5.6842 33 1 0.5464 -0.8358 -4.4814 34 1 4.6398 -0.5117 -3.2745 35 1 4.2108 -0.7978 -4.9779 36 1 3.9127 0.7947 -4.2403 37 1 1.7420 -2.6285 -2.7487 38 1 4.7832 -2.3341 -3.4551 39 1 3.9953 -3.7881 -2.6389 40 1 2.4980 -4.1131 -4.6613 41 1 3.2852 -2.6593 -5.4785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890590388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:02 Heat of formation + Delta-G solvation = -54.072052 kcal Electronic energy + Delta-G solvation = -22276.139035 eV Core-core repulsion = 19157.090615 eV Total energy + Delta-G solvation = -3119.048420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90309 -39.28583 -38.27147 -35.83003 -35.47585 -33.05160 -32.02948 -29.66369 -27.59011 -27.27413 -25.62220 -24.46325 -23.05428 -22.56556 -21.42761 -19.22879 -18.33894 -17.81114 -17.56007 -16.98591 -16.63657 -16.40899 -16.27263 -15.79977 -15.45022 -14.82677 -14.64153 -14.35781 -14.00084 -13.64743 -13.39000 -13.14814 -13.04860 -12.91546 -12.70595 -12.61745 -12.38251 -12.27447 -12.15728 -12.10192 -11.91936 -11.67560 -11.27918 -11.10574 -11.06549 -11.00904 -10.53337 -9.58416 -9.34995 -8.17413 -6.27230 1.37381 1.38753 1.49929 1.95383 2.02435 2.42512 2.84237 3.01996 3.12247 3.63185 3.74283 3.92256 4.05811 4.13420 4.18781 4.24208 4.34879 4.39982 4.42474 4.61204 4.65840 4.69075 4.76079 4.81594 4.87239 4.89417 4.91820 4.98351 5.00960 5.06820 5.24876 5.30318 5.39596 5.44302 5.69480 5.76226 5.94240 6.10873 6.18414 6.60404 6.79537 7.38377 7.55769 8.88379 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.006760 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.806781 B = 4140.987887 C = 4951.462112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.029 3.971 3 H 0.040 0.960 4 C -0.524 4.524 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.521 3.479 13 O -0.559 6.559 14 N -0.616 5.616 15 C 0.067 3.933 16 C 0.052 3.948 17 O -0.381 6.381 18 C 0.068 3.932 19 C 0.162 3.838 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.178 4.178 23 C -0.162 4.162 24 H 0.043 0.957 25 H 0.016 0.984 26 H 0.073 0.927 27 H 0.265 0.735 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 1.535 -16.032 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.007 3.993 3 H 0.058 0.942 4 C -0.563 4.563 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.207 1.207 12 C 0.312 3.688 13 O -0.437 6.437 14 N -0.351 5.351 15 C -0.055 4.055 16 C -0.026 4.026 17 O -0.299 6.299 18 C -0.009 4.009 19 C 0.078 3.922 20 C -0.204 4.204 21 C -0.158 4.158 22 C -0.215 4.215 23 C -0.199 4.199 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.258 1.140 -16.013 16.103 hybrid contribution 0.234 -0.675 1.789 1.926 sum 1.492 0.466 -14.225 14.310 Atomic orbital electron populations 1.21499 0.95523 0.98979 1.01298 1.18803 0.94775 0.95983 0.89697 0.94245 1.21213 1.31606 1.12289 0.91174 0.93887 1.25544 0.95197 0.95737 1.01256 1.69925 1.37067 1.23542 1.24321 0.85649 0.78490 0.78703 0.79360 1.19840 1.19922 1.20672 1.21502 0.75678 0.86952 0.84631 1.90526 1.50306 1.18256 1.84652 1.48415 1.69379 1.09738 1.07604 1.22527 1.00904 0.80565 1.01540 1.23023 0.95068 1.00564 0.83909 1.87910 1.85915 1.20007 1.36117 1.22966 0.97235 0.81576 0.99140 1.20889 0.96131 0.90560 0.84621 1.22116 0.94477 1.02284 1.01489 1.22206 1.00306 0.91798 1.01521 1.22871 0.94606 1.02769 1.01213 1.23231 1.02684 1.01079 0.92886 0.93843 0.96474 0.90787 0.92544 0.88742 0.90154 0.84687 0.92918 0.85398 0.93378 0.93942 0.89284 0.91430 0.89371 0.88375 0.91336 0.88347 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 8.80 71.98 0.63 -4.77 16 2 C 0.03 1.43 1.79 -12.28 -0.02 1.41 16 3 H 0.04 2.01 6.46 -2.38 -0.02 2.00 16 4 C -0.52 -30.35 8.34 25.60 0.21 -30.14 16 5 H 0.04 2.67 7.00 -2.91 -0.02 2.65 16 6 C 0.02 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -50.74 11.32 21.44 0.24 -50.50 16 8 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 C 0.52 24.02 6.64 87.66 0.58 24.60 16 13 O -0.56 -28.73 11.58 -3.05 -0.04 -28.76 16 14 N -0.62 -22.02 2.72 -771.45 -2.10 -24.12 16 15 C 0.07 1.96 5.92 86.22 0.51 2.47 16 16 C 0.05 1.20 6.97 71.94 0.50 1.70 16 17 O -0.38 -9.30 10.37 -148.98 -1.54 -10.85 16 18 C 0.07 1.66 5.45 72.08 0.39 2.05 16 19 C 0.16 4.81 0.89 3.57 0.00 4.82 16 20 C -0.15 -3.75 7.17 71.98 0.52 -3.23 16 21 C -0.14 -4.56 3.27 -10.80 -0.04 -4.59 16 22 C -0.18 -5.49 9.20 30.61 0.28 -5.21 16 23 C -0.16 -3.83 9.57 30.62 0.29 -3.54 16 24 H 0.04 1.70 7.64 -2.39 -0.02 1.68 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 27 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.09 3.02 5.15 -2.39 -0.01 3.01 16 29 H 0.08 2.15 7.69 -2.39 -0.02 2.13 16 30 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.13 2.36 7.92 -2.39 -0.02 2.34 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.26 6.86 -2.39 -0.02 1.25 16 35 H 0.09 1.79 6.99 -2.39 -0.02 1.77 16 36 H 0.07 1.65 7.24 -2.39 -0.02 1.64 16 37 H 0.09 3.64 6.11 -2.39 -0.01 3.63 16 38 H 0.10 2.85 5.90 -2.39 -0.01 2.83 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.12 2.08 7.25 -2.39 -0.02 2.06 16 Total: -1.00 -66.18 311.59 3.93 -62.25 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.02 Total: 17.70 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.32 Total: -12.76 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.85 Total: -74.62 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.58 Total: -39.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.18 3.93 -62.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890590388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.182 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds