Wall clock time and date at job start Mon Mar 30 2020 19:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47123 * 2 1 4 4 C 1.50697 * 109.46999 * 239.99674 * 2 1 3 5 5 H 1.08001 * 119.99482 * 240.00177 * 4 2 1 6 6 C 1.37873 * 120.00207 * 59.99863 * 4 2 1 7 7 N 1.31513 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99892 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47307 * 90.00468 * 8 6 4 10 10 H 1.48502 * 109.46884 * 210.00172 * 8 6 4 11 11 H 1.48494 * 109.47421 * 329.99837 * 8 6 4 12 12 C 1.50703 * 109.47039 * 119.99495 * 2 1 3 13 13 O 1.21283 * 119.99697 * 113.21903 * 12 2 1 14 14 N 1.34777 * 119.99912 * 293.22177 * 12 2 1 15 15 C 1.47153 * 120.98318 * 356.23238 * 14 12 2 16 16 C 1.53296 * 108.38120 * 129.19284 * 15 14 12 17 17 O 1.42954 * 109.22795 * 52.30335 * 16 15 14 18 18 C 1.42968 * 114.16596 * 297.41941 * 17 16 15 19 19 C 1.47153 * 120.97783 * 175.95130 * 14 12 2 20 20 C 1.53004 * 109.67988 * 111.08539 * 19 14 12 21 21 C 1.53000 * 109.68484 * 350.53074 * 19 14 12 22 22 C 1.52993 * 117.49725 * 263.41905 * 21 19 14 23 23 C 1.52999 * 117.49930 * 194.75778 * 21 19 14 24 24 H 1.09002 * 109.46799 * 293.89822 * 1 2 3 25 25 H 1.09001 * 109.46901 * 53.89341 * 1 2 3 26 26 H 1.08994 * 109.47278 * 173.89477 * 1 2 3 27 27 H 0.96998 * 120.00418 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.68255 * 248.91149 * 15 14 12 29 29 H 1.09004 * 109.68234 * 9.47046 * 15 14 12 30 30 H 1.09002 * 109.51132 * 172.22585 * 16 15 14 31 31 H 1.09006 * 109.51282 * 292.32531 * 16 15 14 32 32 H 1.09002 * 109.51211 * 182.50162 * 18 17 16 33 33 H 1.09003 * 109.50808 * 302.65515 * 18 17 16 34 34 H 1.09006 * 109.46692 * 60.00327 * 20 19 14 35 35 H 1.09000 * 109.46917 * 179.97438 * 20 19 14 36 36 H 1.08991 * 109.47179 * 299.99615 * 20 19 14 37 37 H 1.09001 * 115.54545 * 49.09035 * 21 19 14 38 38 H 1.08999 * 117.50258 * 359.97438 * 22 21 19 39 39 H 1.09009 * 117.49506 * 145.02234 * 22 21 19 40 40 H 1.08998 * 117.49799 * 214.97926 * 23 21 19 41 41 H 1.09006 * 117.49802 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3213 -1.1207 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1418 -5.1122 11 1 3.6292 -1.7586 -3.7121 12 6 2.0324 -0.7103 1.2306 13 8 2.6249 -1.7631 1.1236 14 7 1.8231 -0.1756 2.4499 15 6 1.1799 1.1393 2.6002 16 6 0.0335 1.0043 3.6088 17 8 0.5283 0.3991 4.8057 18 6 1.0281 -0.9284 4.6270 19 6 2.2255 -0.8924 3.6704 20 6 3.3942 -0.1622 4.3352 21 6 2.6443 -2.3204 3.3151 22 6 1.5971 -3.4242 3.4756 23 6 2.7645 -3.3271 4.4609 24 1 -0.3633 0.4163 0.9396 25 1 -0.3633 0.6056 -0.8303 26 1 -0.3633 -1.0218 -0.1093 27 1 0.7089 1.1611 -3.4844 28 1 1.9072 1.8641 2.9660 29 1 0.7859 1.4674 1.6383 30 1 -0.3672 1.9915 3.8389 31 1 -0.7539 0.3817 3.1839 32 1 1.3429 -1.3316 5.5895 33 1 0.2447 -1.5587 4.2060 34 1 3.0886 0.8513 4.5953 35 1 3.6891 -0.6956 5.2388 36 1 4.2370 -0.1219 3.6453 37 1 3.3494 -2.4117 2.4889 38 1 0.6100 -3.1332 3.8347 39 1 1.6136 -4.2421 2.7550 40 1 3.5484 -4.0810 4.3883 41 1 2.5457 -2.9720 5.4680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890590394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:05 Heat of formation + Delta-G solvation = -27.099348 kcal Electronic energy + Delta-G solvation = -22358.631181 eV Core-core repulsion = 19240.752386 eV Total energy + Delta-G solvation = -3117.878796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62296 -37.84089 -36.92358 -34.32029 -33.74955 -31.82185 -30.17307 -28.47977 -26.25633 -25.19425 -24.22296 -22.81410 -22.06432 -21.37122 -20.04317 -17.94055 -16.64045 -16.31864 -16.13516 -15.37194 -15.31498 -14.83443 -14.71828 -14.35106 -14.00210 -13.60879 -13.17799 -12.85980 -12.42196 -12.35844 -12.08148 -11.73767 -11.54060 -11.41156 -11.19803 -11.02722 -10.91019 -10.73426 -10.50495 -10.42296 -10.28703 -10.15850 -9.91444 -9.79640 -9.73031 -8.99536 -8.45020 -8.00792 -7.81187 -6.05800 -4.08057 3.31990 3.35870 3.38364 3.46463 3.65381 3.87546 4.25042 4.44530 4.79026 4.88498 5.05734 5.20536 5.21602 5.28553 5.33238 5.34500 5.42790 5.64859 5.72735 5.78335 5.78855 5.87862 5.91629 5.97033 6.05626 6.12931 6.26871 6.37339 6.39769 6.59117 6.71612 6.79828 6.92583 7.17482 7.23860 7.43280 7.70690 7.96783 8.06662 8.36048 9.00019 9.24312 9.57350 11.02416 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.006675 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.518026 B = 4193.815189 C = 4871.392101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.529 6.529 14 N -0.619 5.619 15 C 0.070 3.930 16 C 0.046 3.954 17 O -0.382 6.382 18 C 0.052 3.948 19 C 0.168 3.832 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.179 4.179 23 C -0.198 4.198 24 H 0.016 0.984 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -0.172 13.823 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.322 3.678 13 O -0.406 6.406 14 N -0.355 5.355 15 C -0.053 4.053 16 C -0.032 4.032 17 O -0.300 6.300 18 C -0.025 4.025 19 C 0.083 3.917 20 C -0.203 4.203 21 C -0.161 4.161 22 C -0.215 4.215 23 C -0.235 4.235 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.181 0.819 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.631 -0.532 13.764 13.789 hybrid contribution 0.123 -0.468 -1.037 1.145 sum -0.507 -1.000 12.726 12.776 Atomic orbital electron populations 1.21867 0.96490 1.01016 0.99830 1.18878 0.94067 0.96700 0.89394 0.93339 1.21125 1.31061 1.12690 0.88942 0.90813 1.24935 0.95122 0.95028 0.99082 1.69873 1.37182 1.23045 1.23542 0.86465 0.79431 0.79259 0.82135 1.20704 1.21312 1.19789 1.21976 0.76902 0.85024 0.83879 1.90304 1.41471 1.23734 1.85052 1.48440 1.62178 1.19532 1.05370 1.22499 0.95324 0.85581 1.01941 1.23022 0.95480 0.98863 0.85808 1.87891 1.80914 1.29270 1.31927 1.23226 0.95390 0.84233 0.99688 1.20629 0.93975 0.91567 0.85565 1.21957 0.97638 1.00450 1.00208 1.23457 1.04674 0.87662 1.00306 1.22947 0.93979 1.02229 1.02379 1.23079 1.01591 1.04007 0.94862 0.96503 0.89164 0.94746 0.92976 0.91457 0.86964 0.88016 0.92559 0.88521 0.92297 0.92087 0.92014 0.92176 0.81908 0.89412 0.89082 0.89155 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.41 37.16 0.31 -2.70 16 2 C 0.03 0.74 1.79 -92.92 -0.17 0.58 16 3 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 4 C -0.50 -13.89 8.37 -34.44 -0.29 -14.18 16 5 H 0.07 2.16 6.77 -52.49 -0.36 1.81 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.78 11.39 55.43 0.63 -24.15 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.53 11.76 6.88 -10.98 -0.08 11.68 16 13 O -0.53 -12.85 11.35 5.56 0.06 -12.79 16 14 N -0.62 -11.08 2.71 -157.51 -0.43 -11.50 16 15 C 0.07 1.06 5.29 -3.53 -0.02 1.04 16 16 C 0.05 0.60 6.86 37.31 0.26 0.86 16 17 O -0.38 -5.42 10.37 -35.23 -0.37 -5.78 16 18 C 0.05 0.72 4.70 37.31 0.18 0.90 16 19 C 0.17 2.63 0.90 -131.31 -0.12 2.51 16 20 C -0.14 -2.02 8.50 37.16 0.32 -1.71 16 21 C -0.14 -2.37 3.43 -90.62 -0.31 -2.68 16 22 C -0.18 -2.72 9.75 -26.70 -0.26 -2.98 16 23 C -0.20 -2.62 9.84 -26.69 -0.26 -2.88 16 24 H 0.02 0.31 5.23 -51.93 -0.27 0.04 16 25 H 0.09 2.21 6.26 -51.93 -0.33 1.88 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.07 0.94 7.67 -51.93 -0.40 0.55 16 29 H 0.11 1.81 4.47 -51.93 -0.23 1.58 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.77 7.78 -51.93 -0.40 0.36 16 32 H 0.10 1.16 6.99 -51.93 -0.36 0.80 16 33 H 0.06 0.85 5.91 -51.93 -0.31 0.55 16 34 H 0.06 0.83 7.23 -51.93 -0.38 0.45 16 35 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.16 3.28 5.32 -54.67 -0.29 2.99 16 38 H 0.09 1.26 5.77 -51.93 -0.30 0.96 16 39 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.97 6.96 -51.93 -0.36 0.60 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -29.35 307.70 -7.06 -36.41 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.04 Total: 4.61 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.54 Total: -8.05 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.20 Total: -35.65 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.30 Total: -18.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.35 -7.06 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890590394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.308 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds