Wall clock time and date at job start Mon Mar 30 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46973 * 90.00366 * 8 6 4 10 10 H 1.48505 * 109.47151 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47089 * 330.00544 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 H 1.09010 * 109.80892 * 305.59751 * 16 15 14 18 18 C 1.54662 * 109.82064 * 184.67145 * 16 15 14 19 19 C 1.53814 * 102.02729 * 220.44732 * 18 16 15 20 20 C 1.52224 * 116.37277 * 161.11778 * 19 18 16 21 21 C 1.54068 * 86.57649 * 94.46344 * 20 19 18 22 22 C 1.52221 * 116.37306 * 263.72702 * 19 18 16 23 23 C 1.53451 * 102.78296 * 32.41995 * 19 18 16 24 24 O 1.43356 * 109.82046 * 66.44858 * 16 15 14 25 25 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 26 26 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 27 27 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 31 31 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 32 32 H 1.09002 * 110.91366 * 338.63097 * 18 16 15 33 33 H 1.08997 * 110.92168 * 102.25947 * 18 16 15 34 34 H 1.09001 * 113.69278 * 208.88239 * 20 19 18 35 35 H 1.08993 * 113.69495 * 340.04354 * 20 19 18 36 36 H 1.08997 * 113.56698 * 269.61989 * 21 20 19 37 37 H 1.09003 * 113.63461 * 138.89355 * 21 20 19 38 38 H 1.09006 * 113.68977 * 19.95145 * 22 19 18 39 39 H 1.08996 * 113.69954 * 151.11410 * 22 19 18 40 40 H 1.08996 * 110.33762 * 206.61809 * 23 19 18 41 41 H 1.08996 * 110.43123 * 84.40707 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1618 -4.4117 10 1 2.4866 -0.1415 -5.1123 11 1 3.6294 -1.7585 -3.7120 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 6 2.2001 -0.9368 3.6508 16 6 1.6947 -0.2124 4.9000 17 1 1.9703 0.8413 4.8529 18 6 2.3055 -0.8597 6.1648 19 6 1.1108 -0.8597 7.1337 20 6 1.2013 -1.8108 8.3187 21 6 1.7620 -0.6174 9.1156 22 6 1.0358 0.3017 8.1147 23 6 -0.0883 -1.0443 6.1941 24 8 0.2696 -0.3382 4.9917 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7089 1.1612 -3.4844 29 1 1.1493 0.5390 2.5436 30 1 1.8373 -1.9647 3.6551 31 1 3.2901 -0.9363 3.6466 32 1 2.6397 -1.8765 5.9588 33 1 3.1235 -0.2544 6.5555 34 1 0.2322 -2.1593 8.6757 35 1 1.9187 -2.6192 8.1778 36 1 2.8481 -0.5364 9.0727 37 1 1.3731 -0.5488 10.1315 38 1 1.6220 1.1694 7.8119 39 1 0.0194 0.5581 8.4133 40 1 -0.9856 -0.6106 6.6353 41 1 -0.2449 -2.1016 5.9803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894400394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:51 Heat of formation + Delta-G solvation = -75.883387 kcal Electronic energy + Delta-G solvation = -20569.992745 eV Core-core repulsion = 17449.998515 eV Total energy + Delta-G solvation = -3119.994230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88313 -38.66676 -37.22018 -34.02870 -33.62448 -31.23433 -30.24230 -28.87619 -26.17582 -25.63542 -25.03225 -22.78687 -22.29923 -21.15307 -19.20306 -18.86959 -16.80237 -16.38648 -16.10551 -15.65307 -15.61846 -15.17563 -14.66355 -14.38637 -14.23928 -13.46784 -13.35209 -12.96319 -12.69580 -12.54790 -12.44023 -12.14683 -11.94836 -11.54025 -11.41804 -11.29949 -10.95537 -10.76789 -10.62296 -10.60519 -10.58858 -10.48264 -10.16801 -9.89633 -9.53023 -8.88887 -8.52706 -8.31669 -8.24196 -5.96290 -3.99095 3.38122 3.43364 3.49865 3.54336 3.85420 4.02023 4.10643 4.17535 4.34803 4.46485 4.53636 4.73471 4.90281 4.96206 5.02413 5.32254 5.34496 5.36515 5.37142 5.43772 5.53489 5.55466 5.60604 5.61751 5.72115 5.87724 5.95457 6.04571 6.11895 6.40134 6.74019 6.91808 6.95052 7.03608 7.22034 7.57546 7.84785 8.07368 8.25181 8.56460 9.09968 9.35567 9.66167 11.11386 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.053119 B = 0.003426 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.992444 B = 8171.490907 C = 8408.935792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.741 5.741 15 C 0.112 3.888 16 C 0.073 3.927 17 H 0.086 0.914 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.124 4.124 23 C 0.064 3.936 24 O -0.370 6.370 25 H 0.013 0.987 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.398 0.602 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -0.188 23.338 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.428 6.428 14 N -0.395 5.395 15 C -0.013 4.013 16 C 0.015 3.985 17 H 0.103 0.897 18 C -0.162 4.162 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.178 4.178 22 C -0.161 4.161 23 C -0.012 4.012 24 O -0.289 6.289 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.232 0.768 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.702 -0.730 22.942 22.964 hybrid contribution 0.123 -0.153 -0.602 0.633 sum -0.579 -0.883 22.340 22.365 Atomic orbital electron populations 1.21728 0.96507 0.99780 1.00929 1.18864 0.94187 0.96772 0.89377 0.93081 1.21167 1.30797 1.12715 0.89076 0.90834 1.24954 0.95207 0.95086 0.99076 1.69882 1.37283 1.23131 1.23415 0.86460 0.79433 0.79237 0.82119 1.20712 1.21335 1.19775 1.21966 0.78395 0.84260 0.84555 1.90515 1.38341 1.27033 1.86884 1.46173 1.55202 1.32823 1.05291 1.21573 0.98598 0.96762 0.84334 1.23049 0.81435 0.99875 0.94142 0.89660 1.22730 0.97301 1.02586 0.93536 1.22457 0.96059 0.98631 0.94689 1.22638 1.01764 0.96648 0.95145 1.22922 1.00365 0.96276 0.98217 1.22714 1.01298 0.96446 0.95651 1.23150 0.96764 0.96998 0.84289 1.88553 1.21048 1.77170 1.42167 0.96749 0.88951 0.95106 0.93040 0.76751 0.91926 0.91368 0.89658 0.89651 0.89699 0.90928 0.90132 0.91387 0.91022 0.89703 0.89903 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.65 8.37 -34.44 -0.29 -14.94 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.31 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.52 12.47 7.15 -10.98 -0.08 12.39 16 13 O -0.55 -15.02 15.46 5.55 0.09 -14.94 16 14 N -0.74 -13.91 5.42 -60.30 -0.33 -14.24 16 15 C 0.11 1.75 5.21 -4.04 -0.02 1.73 16 16 C 0.07 0.88 3.58 -25.86 -0.09 0.79 16 17 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 18 C -0.12 -1.13 5.82 -25.43 -0.15 -1.28 16 19 C -0.12 -0.98 0.94 -154.70 -0.15 -1.13 16 20 C -0.12 -0.85 7.47 -26.57 -0.20 -1.05 16 21 C -0.14 -0.88 7.99 -25.67 -0.21 -1.08 16 22 C -0.12 -0.90 7.39 -26.57 -0.20 -1.09 16 23 C 0.06 0.66 7.20 37.39 0.27 0.93 16 24 O -0.37 -4.99 11.00 -35.23 -0.39 -5.38 16 25 H 0.01 0.29 7.56 -51.93 -0.39 -0.11 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.40 6.80 7.89 -40.82 -0.32 6.48 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 33 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.16 16 40 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -32.66 330.08 -7.99 -40.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.83 Total: 2.41 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.11 Total: -5.55 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.30 Total: -39.48 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.30 Total: -20.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.66 -7.99 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894400394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.237 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds