Wall clock time and date at job start Mon Mar 30 2020 19:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47273 * 2 1 4 4 C 1.50704 * 109.47231 * 240.00097 * 2 1 3 5 5 H 1.08000 * 119.99773 * 242.93660 * 4 2 1 6 6 C 1.37871 * 120.00064 * 62.65689 * 4 2 1 7 7 N 1.31518 * 120.00049 * 7.35278 * 6 4 2 8 8 Si 1.86798 * 120.00099 * 187.35852 * 6 4 2 9 9 H 1.48501 * 109.47417 * 94.95457 * 8 6 4 10 10 H 1.48501 * 109.47207 * 214.95506 * 8 6 4 11 11 H 1.48499 * 109.47245 * 334.95622 * 8 6 4 12 12 C 1.50699 * 109.46814 * 120.00503 * 2 1 3 13 13 O 1.21284 * 120.00601 * 89.00165 * 12 2 1 14 14 N 1.34780 * 119.99778 * 268.99793 * 12 2 1 15 15 C 1.47022 * 125.64870 * 3.87979 * 14 12 2 16 16 C 1.54309 * 107.27839 * 180.96555 * 15 14 12 17 17 C 1.55160 * 102.86232 * 22.52736 * 16 15 14 18 18 H 1.08999 * 111.00141 * 82.37913 * 17 16 15 19 19 C 1.52998 * 111.00425 * 206.22821 * 17 16 15 20 20 H 1.09002 * 109.87210 * 171.18872 * 19 17 16 21 21 C 1.54108 * 109.88158 * 292.19716 * 19 17 16 22 22 C 1.54804 * 104.18728 * 121.45199 * 21 19 17 23 23 C 1.54997 * 102.09482 * 20.88310 * 22 21 19 24 24 O 1.43740 * 109.87920 * 50.02731 * 19 17 16 25 25 C 1.47428 * 125.65014 * 184.18809 * 14 12 2 26 26 H 1.09005 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47635 * 299.96610 * 1 2 3 28 28 H 1.08999 * 109.47418 * 59.96720 * 1 2 3 29 29 H 0.96995 * 119.99875 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.88501 * 300.51824 * 15 14 12 31 31 H 1.09008 * 109.88077 * 61.67629 * 15 14 12 32 32 H 1.08998 * 110.92693 * 264.11300 * 16 15 14 33 33 H 1.09001 * 110.58849 * 140.78434 * 16 15 14 34 34 H 1.08992 * 110.48578 * 240.13385 * 21 19 17 35 35 H 1.09000 * 110.48187 * 2.64130 * 21 19 17 36 36 H 1.09004 * 110.90440 * 139.08191 * 22 21 19 37 37 H 1.08998 * 110.90775 * 262.67854 * 22 21 19 38 38 H 1.09001 * 110.61378 * 81.47316 * 23 22 21 39 39 H 1.08993 * 110.61728 * 204.31672 * 23 22 21 40 40 H 1.09002 * 110.36388 * 274.67367 * 25 14 12 41 41 H 1.08999 * 110.36283 * 36.99647 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6135 -1.6153 -1.1321 6 6 1.7451 -0.2083 -2.4820 7 7 1.1594 0.9632 -2.6020 8 14 2.1875 -1.1918 -4.0071 9 1 1.0104 -1.9852 -4.4434 10 1 2.5899 -0.2643 -5.0948 11 1 3.3140 -2.1080 -3.6958 12 6 2.0322 -0.7105 1.2304 13 8 2.2171 -1.9089 1.2058 14 7 2.2760 -0.0142 2.3583 15 6 2.0206 1.4207 2.5516 16 6 2.4754 1.7787 3.9820 17 6 3.4901 0.6527 4.3137 18 1 4.4722 0.8768 3.8973 19 6 3.5771 0.4202 5.8234 20 1 4.1707 -0.4710 6.0274 21 6 4.2178 1.6442 6.5062 22 6 3.1465 2.1183 7.5180 23 6 2.2804 0.8450 7.6945 24 8 2.2570 0.2676 6.3713 25 6 2.8489 -0.5638 3.6006 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5133 0.8903 28 1 -0.3634 0.5143 -0.8897 29 1 0.9577 1.3166 -3.4824 30 1 2.5892 1.9998 1.8239 31 1 0.9557 1.6259 2.4410 32 1 1.6344 1.7563 4.6750 33 1 2.9627 2.7536 3.9966 34 1 5.1320 1.3564 7.0252 35 1 4.4255 2.4242 5.7737 36 1 3.6057 2.4103 8.4625 37 1 2.5561 2.9361 7.1049 38 1 2.7450 0.1602 8.4039 39 1 1.2737 1.1076 8.0191 40 1 2.0643 -0.9970 4.2209 41 1 3.6077 -1.3116 3.3699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894696990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:04 Heat of formation + Delta-G solvation = -112.742978 kcal Electronic energy + Delta-G solvation = -21079.184262 eV Core-core repulsion = 17957.591680 eV Total energy + Delta-G solvation = -3121.592582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28743 -40.21190 -38.04743 -35.78763 -33.60377 -32.86300 -32.19277 -30.54276 -28.55672 -27.28621 -25.34172 -23.74227 -23.30876 -22.20877 -21.01977 -20.06067 -18.38336 -17.95529 -17.47025 -17.06745 -16.73455 -16.29365 -15.99059 -15.66714 -15.20562 -14.62794 -14.49948 -14.37243 -14.11051 -13.79558 -13.65896 -13.23070 -12.92965 -12.81876 -12.70171 -12.63359 -12.59142 -12.36723 -12.28643 -12.08237 -11.99148 -11.60233 -11.59864 -11.36526 -11.12802 -10.60793 -10.52970 -10.35335 -9.54743 -8.21134 -6.28999 1.38632 1.40393 1.51739 1.85512 2.17631 2.44947 2.98562 3.10221 3.41184 3.60750 3.83520 3.92062 4.07247 4.13987 4.20338 4.35190 4.38388 4.41133 4.57275 4.63543 4.67999 4.76944 4.81288 4.90325 4.91004 4.94175 4.97785 4.99744 5.05570 5.11020 5.21160 5.29021 5.33390 5.38496 5.54702 5.65482 5.81445 6.07702 6.13569 6.63933 6.77216 7.34053 7.44298 8.87822 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.043737 B = 0.004032 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.043458 B = 6942.249653 C = 7059.159621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.034 3.966 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.532 3.468 13 O -0.595 6.595 14 N -0.628 5.628 15 C 0.097 3.903 16 C -0.105 4.105 17 C -0.091 4.091 18 H 0.104 0.896 19 C 0.088 3.912 20 H 0.070 0.930 21 C -0.146 4.146 22 C -0.148 4.148 23 C 0.037 3.963 24 O -0.395 6.395 25 C 0.108 3.892 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 7.879 21.459 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.013 3.987 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.324 3.676 13 O -0.476 6.476 14 N -0.362 5.362 15 C -0.025 4.025 16 C -0.143 4.143 17 C -0.110 4.110 18 H 0.122 0.878 19 C 0.030 3.970 20 H 0.088 0.912 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.039 4.039 24 O -0.315 6.315 25 C -0.014 4.014 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.544 7.249 21.132 22.798 hybrid contribution 0.187 -0.784 -1.034 1.312 sum 4.732 6.464 20.098 21.636 Atomic orbital electron populations 1.21440 0.95586 0.99145 1.00805 1.18746 0.94708 0.96192 0.89093 0.93864 1.21162 1.34703 1.09986 0.91223 0.94085 1.25580 0.94922 0.95680 1.01322 1.69996 1.42696 1.17337 1.24650 0.85584 0.78513 0.78765 0.79055 1.19917 1.19549 1.20341 1.21458 0.75273 0.86778 0.84090 1.90491 1.55028 1.17232 1.84850 1.48733 1.63688 1.11335 1.12460 1.22212 1.01190 0.80109 0.99037 1.22590 0.99468 0.99023 0.93181 1.22594 0.99932 0.94114 0.94362 0.87782 1.22605 0.84298 0.98760 0.91372 0.91187 1.22974 0.99311 0.97028 0.99003 1.23112 0.97074 0.97992 1.00369 1.23735 1.01784 0.93915 0.84482 1.88908 1.30433 1.81509 1.30662 1.22230 0.97095 0.97245 0.84854 0.95916 0.93805 0.91578 0.92355 0.91524 0.91681 0.89498 0.87431 0.89274 0.89310 0.88533 0.90214 0.91644 0.88461 0.92258 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 8.98 71.98 0.65 -4.95 16 2 C 0.03 1.82 2.11 -12.29 -0.03 1.79 16 3 H 0.04 2.34 7.04 -2.39 -0.02 2.33 16 4 C -0.53 -32.14 8.30 25.60 0.21 -31.93 16 5 H 0.04 2.64 7.14 -2.91 -0.02 2.62 16 6 C 0.02 1.42 5.22 84.65 0.44 1.87 16 7 N -0.91 -51.98 11.86 21.45 0.25 -51.73 16 8 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 C 0.53 27.30 6.88 87.66 0.60 27.90 16 13 O -0.60 -34.91 16.26 -3.04 -0.05 -34.96 16 14 N -0.63 -25.17 3.33 -811.80 -2.70 -27.87 16 15 C 0.10 3.00 6.22 86.72 0.54 3.54 16 16 C -0.11 -2.26 5.82 31.78 0.18 -2.08 16 17 C -0.09 -2.06 2.74 -9.40 -0.03 -2.09 16 18 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.09 1.61 3.24 30.97 0.10 1.71 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.15 -1.69 6.37 31.58 0.20 -1.49 16 22 C -0.15 -1.49 7.15 31.89 0.23 -1.26 16 23 C 0.04 0.51 7.72 72.67 0.56 1.07 16 24 O -0.40 -8.56 9.35 -148.98 -1.39 -9.95 16 25 C 0.11 3.62 6.32 86.85 0.55 4.17 16 26 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.04 1.88 7.84 -2.39 -0.02 1.86 16 28 H 0.07 3.49 6.58 -2.39 -0.02 3.48 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.07 2.10 7.67 -2.39 -0.02 2.08 16 31 H 0.06 2.02 7.84 -2.38 -0.02 2.00 16 32 H 0.09 1.88 7.06 -2.39 -0.02 1.87 16 33 H 0.11 1.68 7.96 -2.39 -0.02 1.66 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.93 7.28 -2.39 -0.02 0.92 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 2.07 7.50 -2.39 -0.02 2.06 16 41 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 Total: -1.00 -73.19 324.17 3.35 -69.84 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.00 Total: 8.67 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.22 Total: -1.73 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.45 Total: -79.60 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.44 Total: -44.91 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.19 3.35 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894696990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.905 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds