Wall clock time and date at job start Mon Mar 30 2020 19:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.55129 * 299.99487 * 15 13 12 17 17 C 1.53151 * 109.55564 * 60.20020 * 15 13 12 18 18 C 1.53062 * 109.40196 * 178.37349 * 17 15 13 19 19 O 1.43045 * 109.52675 * 300.83074 * 18 17 15 20 20 C 1.42579 * 113.85737 * 58.66574 * 19 18 17 21 21 C 1.53429 * 113.56453 * 73.88923 * 20 19 18 22 22 C 1.53848 * 86.97445 * 89.48311 * 21 20 19 23 23 C 1.53391 * 113.61766 * 171.80322 * 20 19 18 24 24 C 1.52806 * 112.94427 * 302.91261 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 30 30 H 1.09001 * 109.48600 * 298.45583 * 17 15 13 31 31 H 1.09001 * 109.48092 * 58.50240 * 17 15 13 32 32 H 1.09000 * 109.47777 * 180.78242 * 18 17 15 33 33 H 1.08997 * 109.38956 * 60.81572 * 18 17 15 34 34 H 1.09001 * 113.62699 * 203.99850 * 21 20 19 35 35 H 1.08993 * 113.63724 * 334.95875 * 21 20 19 36 36 H 1.08999 * 113.59962 * 270.59490 * 22 21 20 37 37 H 1.08996 * 113.67595 * 139.73307 * 22 21 20 38 38 H 1.09007 * 113.63219 * 25.09611 * 23 20 19 39 39 H 1.09001 * 113.62885 * 156.04094 * 23 20 19 40 40 H 1.09008 * 109.56023 * 294.10276 * 24 20 19 41 41 H 1.08997 * 109.56622 * 173.76224 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 1.9768 -1.5509 3.8338 17 6 4.0548 -1.2769 3.3258 18 6 4.5772 -1.9624 4.5906 19 8 4.6079 -1.0207 5.6669 20 6 3.3388 -0.4429 5.9641 21 6 2.3822 -1.4014 6.6855 22 6 2.9801 -0.8769 8.0024 23 6 3.3353 0.4105 7.2387 24 6 2.7061 0.2560 4.7615 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1527 30 1 4.0177 -1.9975 2.5088 31 1 4.7205 -0.4566 3.0574 32 1 5.5833 -2.3408 4.4099 33 1 3.9186 -2.7909 4.8515 34 1 1.3299 -1.1503 6.5529 35 1 2.5945 -2.4539 6.4979 36 1 3.8511 -1.4383 8.3404 37 1 2.2413 -0.7276 8.7897 38 1 4.3141 0.8153 7.4961 39 1 2.5464 1.1623 7.2589 40 1 3.3088 1.1207 4.4832 41 1 1.6969 0.5792 5.0164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895981705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:21 Heat of formation + Delta-G solvation = -78.588760 kcal Electronic energy + Delta-G solvation = -21113.511258 eV Core-core repulsion = 17993.399714 eV Total energy + Delta-G solvation = -3120.111544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70671 -38.76614 -36.23101 -34.85444 -33.58832 -32.28813 -29.70435 -28.92069 -25.92117 -25.46560 -25.19445 -23.30226 -21.91410 -20.42493 -19.28206 -19.08833 -17.26711 -16.26379 -16.02147 -15.65410 -15.24660 -15.03614 -14.55378 -14.38575 -14.08430 -13.63697 -13.31062 -13.16015 -12.65967 -12.46752 -12.36216 -11.75199 -11.70625 -11.45751 -11.11081 -11.02397 -10.97677 -10.92161 -10.85520 -10.78446 -10.52984 -10.30579 -10.25089 -10.02827 -9.46489 -9.04921 -8.85024 -8.55782 -7.89953 -6.13273 -4.22596 3.22559 3.30274 3.32741 3.38888 3.58135 4.04819 4.35001 4.42692 4.52213 4.68753 4.83804 4.87935 4.95751 5.04795 5.19038 5.25806 5.36161 5.48590 5.57006 5.59552 5.67325 5.72681 5.76495 5.84072 5.89323 5.95042 6.15349 6.20395 6.23007 6.41262 6.81732 6.95849 7.14826 7.23790 7.46721 7.56092 7.68972 7.91115 8.14461 8.67511 8.77930 9.14169 9.45355 10.92758 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038280 B = 0.004152 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.279365 B = 6741.728047 C = 7154.978496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.506 3.494 14 O -0.555 6.555 15 C -0.109 4.109 16 H 0.090 0.910 17 C -0.147 4.147 18 C 0.064 3.936 19 O -0.358 6.358 20 C 0.093 3.907 21 C -0.165 4.165 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.110 4.110 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -6.452 16.812 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.290 3.710 14 O -0.434 6.434 15 C -0.131 4.131 16 H 0.108 0.892 17 C -0.185 4.185 18 C -0.012 4.012 19 O -0.277 6.277 20 C 0.053 3.947 21 C -0.203 4.203 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.148 4.148 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.152 -5.431 16.762 18.103 hybrid contribution 0.111 -1.056 -1.219 1.617 sum 4.264 -6.487 15.543 17.374 Atomic orbital electron populations 1.22072 0.98530 0.99035 1.00862 1.18744 0.90995 0.94006 0.80143 0.93432 1.21254 1.32350 1.13166 0.90346 0.92071 1.24894 0.94821 0.94951 0.99075 1.69917 1.35953 1.22464 1.23758 0.86399 0.78611 0.79521 0.82595 1.19745 1.20875 1.20858 1.46528 1.64994 1.13459 1.10589 1.20328 0.78512 0.87453 0.84696 1.90643 1.51432 1.16135 1.85149 1.21384 0.97606 0.99268 0.94825 0.89185 1.22154 0.95848 1.01754 0.98707 1.22575 1.01838 0.90894 0.85935 1.87878 1.28517 1.58960 1.52310 1.22277 0.84526 0.94140 0.93742 1.23506 0.99804 0.99978 0.96976 1.22785 1.00799 0.97257 0.96397 1.22948 1.02750 0.96761 0.93753 1.21807 1.02040 0.98152 0.92798 0.89168 0.96723 0.95532 0.92635 0.78050 0.90074 0.90390 0.88583 0.93027 0.89260 0.91145 0.90010 0.91495 0.90562 0.88723 0.90197 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.71 -14.72 4.97 -54.93 -0.27 -14.99 16 13 C 0.51 10.07 7.12 -10.98 -0.08 10.00 16 14 O -0.55 -13.36 15.59 5.56 0.09 -13.27 16 15 C -0.11 -1.59 2.54 -91.52 -0.23 -1.82 16 16 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 17 C -0.15 -1.87 5.26 -26.62 -0.14 -2.01 16 18 C 0.06 0.70 6.73 37.19 0.25 0.95 16 19 O -0.36 -4.55 10.45 -35.23 -0.37 -4.92 16 20 C 0.09 1.10 1.03 -90.30 -0.09 1.01 16 21 C -0.17 -1.65 7.12 -26.07 -0.19 -1.84 16 22 C -0.14 -1.23 8.02 -25.85 -0.21 -1.44 16 23 C -0.12 -1.28 7.47 -26.09 -0.19 -1.47 16 24 C -0.11 -1.55 3.90 -26.66 -0.10 -1.65 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.94 8.00 -40.82 -0.33 6.61 16 30 H 0.08 0.95 7.63 -51.93 -0.40 0.56 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.50 7.21 -51.93 -0.37 0.12 16 34 H 0.09 0.85 8.02 -51.93 -0.42 0.44 16 35 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.08 1.28 7.97 -51.92 -0.41 0.87 16 41 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -30.74 325.25 -8.03 -38.77 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.77 Total: 6.08 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.21 Total: -7.81 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.35 Total: -39.35 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.28 Total: -18.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.74 -8.03 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895981705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.815 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds