Wall clock time and date at job start Mon Mar 30 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08997 * 109.55129 * 299.99487 * 15 13 12 17 17 C 1.53151 * 109.55564 * 60.20020 * 15 13 12 18 18 C 1.53062 * 109.40196 * 178.37349 * 17 15 13 19 19 O 1.43045 * 109.52675 * 300.83074 * 18 17 15 20 20 C 1.42579 * 113.85737 * 58.66574 * 19 18 17 21 21 C 1.53429 * 113.56453 * 73.88923 * 20 19 18 22 22 C 1.53848 * 86.97445 * 89.48311 * 21 20 19 23 23 C 1.53391 * 113.61766 * 171.80322 * 20 19 18 24 24 C 1.52806 * 112.94427 * 302.91261 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 30 30 H 1.09001 * 109.48600 * 298.45583 * 17 15 13 31 31 H 1.09001 * 109.48092 * 58.50240 * 17 15 13 32 32 H 1.09000 * 109.47777 * 180.78242 * 18 17 15 33 33 H 1.08997 * 109.38956 * 60.81572 * 18 17 15 34 34 H 1.09001 * 113.62699 * 203.99850 * 21 20 19 35 35 H 1.08993 * 113.63724 * 334.95875 * 21 20 19 36 36 H 1.08999 * 113.59962 * 270.59490 * 22 21 20 37 37 H 1.08996 * 113.67595 * 139.73307 * 22 21 20 38 38 H 1.09007 * 113.63219 * 25.09611 * 23 20 19 39 39 H 1.09001 * 113.62885 * 156.04094 * 23 20 19 40 40 H 1.09008 * 109.56023 * 294.10276 * 24 20 19 41 41 H 1.08997 * 109.56622 * 173.76224 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 1.9768 -1.5509 3.8338 17 6 4.0548 -1.2769 3.3258 18 6 4.5772 -1.9624 4.5906 19 8 4.6079 -1.0207 5.6669 20 6 3.3388 -0.4429 5.9641 21 6 2.3822 -1.4014 6.6855 22 6 2.9801 -0.8769 8.0024 23 6 3.3353 0.4105 7.2387 24 6 2.7061 0.2560 4.7615 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1527 30 1 4.0177 -1.9975 2.5088 31 1 4.7205 -0.4566 3.0574 32 1 5.5833 -2.3408 4.4099 33 1 3.9186 -2.7909 4.8515 34 1 1.3299 -1.1503 6.5529 35 1 2.5945 -2.4539 6.4979 36 1 3.8511 -1.4383 8.3404 37 1 2.2413 -0.7276 8.7897 38 1 4.3141 0.8153 7.4961 39 1 2.5464 1.1623 7.2589 40 1 3.3088 1.1207 4.4832 41 1 1.6969 0.5792 5.0164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895981705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:20 Heat of formation + Delta-G solvation = -98.547241 kcal Electronic energy + Delta-G solvation = -21114.376723 eV Core-core repulsion = 17993.399714 eV Total energy + Delta-G solvation = -3120.977009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75115 -40.29746 -37.14804 -36.75987 -34.86420 -34.18831 -30.89926 -30.61198 -27.37956 -26.70739 -26.57460 -24.24175 -23.37321 -21.93492 -20.90254 -20.00118 -18.92492 -17.69328 -17.26165 -16.94747 -16.81937 -16.34294 -15.88191 -15.51433 -15.34775 -14.92702 -14.64783 -14.52411 -14.23716 -13.90022 -13.69495 -13.23496 -13.00363 -12.89149 -12.76113 -12.65185 -12.49500 -12.29874 -12.12428 -11.99312 -11.72363 -11.71780 -11.60510 -11.11541 -11.00725 -10.68128 -10.58655 -10.19844 -9.76001 -8.18991 -6.36824 1.43611 1.44530 1.56663 1.78654 2.33852 2.58708 2.73877 3.11591 3.50044 3.64200 3.74221 3.82374 3.89354 3.93199 4.07044 4.30788 4.37603 4.46753 4.58481 4.71453 4.73616 4.80645 4.84004 4.87139 4.89628 4.98296 5.05228 5.07309 5.08767 5.12240 5.23198 5.39092 5.42241 5.44624 5.60045 5.67046 5.88924 6.08275 6.35160 6.71484 6.95036 7.31087 7.54684 8.87643 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038280 B = 0.004152 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.279365 B = 6741.728047 C = 7154.978496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.603 6.603 15 C -0.097 4.097 16 H 0.119 0.881 17 C -0.144 4.144 18 C 0.065 3.935 19 O -0.372 6.372 20 C 0.087 3.913 21 C -0.159 4.159 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.108 4.108 25 H 0.066 0.934 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -9.291 17.760 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.485 6.485 15 C -0.118 4.118 16 H 0.137 0.863 17 C -0.182 4.182 18 C -0.011 4.011 19 O -0.291 6.291 20 C 0.048 3.952 21 C -0.197 4.197 22 C -0.162 4.162 23 C -0.167 4.167 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.802 -8.312 17.738 20.169 hybrid contribution -0.084 -0.090 -1.505 1.510 sum 4.717 -8.402 16.233 18.877 Atomic orbital electron populations 1.21889 0.98298 0.99497 0.99474 1.18353 0.91156 0.91839 0.82199 0.98750 1.21574 1.32518 1.13528 0.90720 0.90715 1.25827 0.94861 0.95572 1.02421 1.70068 1.37101 1.24002 1.24552 0.85274 0.78102 0.78523 0.78294 1.18180 1.20396 1.21067 1.46274 1.64987 1.14164 1.09669 1.21318 0.77140 0.87024 0.85745 1.90621 1.53278 1.18563 1.85998 1.21371 0.99167 0.99490 0.91769 0.86308 1.22174 0.93924 1.01426 1.00658 1.22722 1.03464 0.90712 0.84169 1.87873 1.29006 1.59446 1.52762 1.22368 0.84793 0.95217 0.92861 1.23498 0.99526 0.99941 0.96712 1.22741 1.01161 0.95960 0.96369 1.23031 1.02844 0.97531 0.93286 1.21786 1.01540 0.97383 0.93876 0.91553 0.97070 0.93918 0.92567 0.76008 0.88636 0.92710 0.86632 0.90796 0.88760 0.90163 0.89778 0.89889 0.90957 0.88279 0.93231 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.07 2.56 44.25 0.11 14.19 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 4 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 9 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.70 -29.15 4.97 -446.08 -2.22 -31.37 16 13 C 0.50 20.20 7.12 87.66 0.62 20.82 16 14 O -0.60 -30.36 15.59 -3.01 -0.05 -30.41 16 15 C -0.10 -2.72 2.54 -11.38 -0.03 -2.74 16 16 H 0.12 2.71 8.11 -2.39 -0.02 2.69 16 17 C -0.14 -3.43 5.26 30.67 0.16 -3.27 16 18 C 0.07 1.22 6.73 72.00 0.48 1.71 16 19 O -0.37 -8.68 10.45 -148.98 -1.56 -10.24 16 20 C 0.09 1.93 1.03 -10.58 -0.01 1.91 16 21 C -0.16 -2.71 7.12 31.02 0.22 -2.49 16 22 C -0.13 -1.93 8.02 31.16 0.25 -1.68 16 23 C -0.13 -2.47 7.47 31.01 0.23 -2.24 16 24 C -0.11 -3.01 3.90 30.64 0.12 -2.89 16 25 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 27 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.40 13.88 8.00 -92.71 -0.74 13.13 16 30 H 0.10 1.99 7.63 -2.39 -0.02 1.98 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.09 7.21 -2.39 -0.02 1.08 16 34 H 0.09 1.53 8.02 -2.39 -0.02 1.51 16 35 H 0.08 1.23 7.26 -2.39 -0.02 1.21 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.10 1.76 8.09 -2.39 -0.02 1.75 16 40 H 0.05 1.66 7.97 -2.38 -0.02 1.64 16 41 H 0.07 2.13 8.04 -2.39 -0.02 2.11 16 Total: -1.00 -68.55 325.25 2.22 -66.33 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.27 Total: 24.93 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 3.50 Total: -10.31 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.98 Total: -84.20 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.60 Total: -40.64 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -68.55 2.22 -66.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895981705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.215 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds