Wall clock time and date at job start Mon Mar 30 2020 19:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47184 * 2 1 4 4 C 1.34798 * 117.00105 * 180.02562 * 3 2 1 5 5 O 1.21543 * 119.99739 * 0.02562 * 4 3 2 6 6 C 1.46944 * 120.00370 * 180.02562 * 4 3 2 7 7 C 1.33084 * 120.00480 * 186.46603 * 6 4 3 8 8 C 1.50705 * 119.99585 * 17.94594 * 7 6 4 9 9 N 1.46902 * 109.46828 * 129.66207 * 8 7 6 10 10 C 1.46850 * 111.00221 * 66.04648 * 9 8 7 11 11 C 1.53034 * 109.52559 * 185.84152 * 10 9 8 12 12 C 1.53128 * 109.27489 * 300.81674 * 11 10 9 13 13 C 1.53119 * 109.15825 * 57.65903 * 12 11 10 14 14 H 1.08999 * 109.50778 * 62.28072 * 13 12 11 15 15 C 1.50703 * 109.50166 * 182.40590 * 13 12 11 16 16 H 1.08002 * 120.00170 * 120.00012 * 15 13 12 17 17 C 1.37871 * 119.99848 * 299.99336 * 15 13 12 18 18 N 1.31519 * 120.00123 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00333 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46922 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47427 * 120.00090 * 19 17 15 22 22 H 1.48506 * 109.47031 * 240.00457 * 19 17 15 23 23 C 1.46851 * 110.99931 * 190.25361 * 9 8 7 24 24 H 1.08996 * 109.47282 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46762 * 300.00221 * 1 2 3 26 26 H 1.09007 * 109.47141 * 59.99962 * 1 2 3 27 27 H 1.08997 * 109.47200 * 120.00153 * 2 1 3 28 28 H 1.08998 * 109.47358 * 240.00236 * 2 1 3 29 29 H 1.08001 * 120.00068 * 6.46731 * 6 4 3 30 30 H 1.07995 * 120.00571 * 197.94360 * 7 6 4 31 31 H 1.08994 * 109.47310 * 249.65905 * 8 7 6 32 32 H 1.08999 * 109.47369 * 9.66538 * 8 7 6 33 33 H 1.08999 * 109.45998 * 305.85292 * 10 9 8 34 34 H 1.08994 * 109.46207 * 65.81856 * 10 9 8 35 35 H 1.08993 * 109.50762 * 60.75695 * 11 10 9 36 36 H 1.09001 * 109.50707 * 180.87884 * 11 10 9 37 37 H 1.09002 * 109.52227 * 177.55892 * 12 11 10 38 38 H 1.08996 * 109.52279 * 297.68807 * 12 11 10 39 39 H 0.97000 * 120.00392 * 179.97438 * 18 17 15 40 40 H 1.08991 * 109.46335 * 294.17744 * 23 9 8 41 41 H 1.08996 * 109.45780 * 54.14720 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5456 -0.0005 5 8 4.0907 0.5817 -0.0015 6 6 3.9121 2.9035 0.0000 7 6 5.2246 3.0807 -0.1303 8 6 6.0847 1.9692 -0.6744 9 7 6.9314 2.4900 -1.7560 10 6 7.9030 3.4636 -1.2414 11 6 8.6665 4.0907 -2.4100 12 6 9.3859 2.9889 -3.1932 13 6 8.3574 1.9627 -3.6767 14 1 7.6525 2.4451 -4.3537 15 6 9.0638 0.8438 -4.3979 16 1 8.9803 -0.1701 -4.0353 17 6 9.8167 1.1145 -5.5208 18 7 9.9187 2.3492 -5.9622 19 14 10.6918 -0.2723 -6.4154 20 1 10.4191 -1.5575 -5.7231 21 1 10.1975 -0.3492 -7.8135 22 1 12.1540 -0.0130 -6.4207 23 6 7.6028 1.3973 -2.4713 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.2598 3.7577 0.1062 30 1 5.6734 4.0211 0.1538 31 1 6.7150 1.5743 0.1223 32 1 5.4482 1.1739 -1.0622 33 1 7.3781 4.2438 -0.6902 34 1 8.6051 2.9597 -0.5774 35 1 7.9665 4.6065 -3.0672 36 1 9.3984 4.8018 -2.0269 37 1 9.8957 3.4259 -4.0519 38 1 10.1146 2.4992 -2.5473 39 1 10.4486 2.5398 -6.7520 40 1 8.3064 0.9030 -1.8015 41 1 6.8599 0.6768 -2.8133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930921309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:59 Heat of formation + Delta-G solvation = -68.960057 kcal Electronic energy + Delta-G solvation = -20390.890266 eV Core-core repulsion = 17271.196254 eV Total energy + Delta-G solvation = -3119.694012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44346 -38.34071 -36.84462 -34.54190 -32.90957 -31.91203 -31.16863 -29.83974 -26.48686 -24.95504 -24.08280 -22.48974 -21.77366 -21.22837 -19.50160 -18.58199 -17.73598 -16.62635 -16.44330 -15.77622 -15.14651 -14.86311 -14.52167 -14.07885 -13.90045 -13.42183 -13.29273 -13.09562 -12.86506 -12.59033 -12.28015 -12.16126 -11.90629 -11.78071 -11.66527 -11.32323 -10.94337 -10.68693 -10.63240 -10.62236 -10.09590 -9.90632 -9.79029 -9.55894 -9.38424 -9.00165 -8.67102 -8.28119 -7.65864 -5.95058 -4.00940 1.09682 2.69071 2.92376 3.31858 3.39800 3.44113 4.42549 4.61791 4.69094 4.74258 4.82016 4.96745 5.08413 5.30198 5.35032 5.45388 5.56082 5.57676 5.66845 5.73212 5.83881 5.94258 6.08639 6.17803 6.24338 6.29637 6.43491 6.53924 6.65960 6.72621 6.77233 6.99284 7.23623 7.41099 7.66107 7.75846 7.79012 7.84615 8.11147 8.19923 8.51000 9.03270 9.63265 11.10957 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.003972 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.973727 B = 7048.173529 C = 7974.197797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.494 3.506 5 O -0.506 6.506 6 C -0.216 4.216 7 C -0.015 4.015 8 C 0.048 3.952 9 N -0.535 5.535 10 C 0.056 3.944 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.070 3.930 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.020 0.980 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 1.403 12.972 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.342 3.658 5 O -0.396 6.396 6 C -0.236 4.236 7 C -0.034 4.034 8 C -0.078 4.078 9 N -0.260 5.260 10 C -0.072 4.072 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.056 4.056 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.827 1.414 12.491 18.687 hybrid contribution 1.057 -1.186 0.110 1.593 sum -12.770 0.228 12.601 17.942 Atomic orbital electron populations 1.21800 0.92775 1.02876 1.03444 1.22994 0.95208 0.80394 1.02681 1.86588 1.24447 1.32092 1.84495 1.21685 0.80277 0.90942 0.72935 1.90795 1.59594 1.43297 1.45927 1.21805 0.95686 0.93439 1.12632 1.23987 0.93645 1.00093 0.85688 1.21886 0.96382 0.95710 0.93867 1.62136 1.23054 1.16721 1.24128 1.22131 0.93329 0.94840 0.96873 1.21672 0.98336 0.98801 0.96667 1.21662 0.98489 0.95691 0.99106 1.18677 0.92993 0.94060 0.90664 0.94745 1.21197 1.29832 0.93717 1.10462 0.92762 1.24934 0.96514 0.95422 0.97017 1.69903 1.40787 1.18120 1.23959 0.86567 0.79355 0.82595 0.79656 1.19849 1.21047 1.21113 1.22310 0.95870 0.91175 0.96278 0.90322 0.91614 0.91428 0.91354 0.91083 0.84082 0.84869 0.93545 0.86937 0.92468 0.95762 0.92070 0.93520 0.89046 0.95147 0.93145 0.96142 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.62 6.20 37.16 0.23 0.85 16 3 O -0.36 -4.46 10.23 -40.76 -0.42 -4.87 16 4 C 0.49 6.89 7.67 34.26 0.26 7.15 16 5 O -0.51 -8.33 13.21 -19.30 -0.25 -8.58 16 6 C -0.22 -2.59 10.12 -37.85 -0.38 -2.97 16 7 C -0.02 -0.19 9.29 -36.10 -0.34 -0.53 16 8 C 0.05 0.79 4.47 -4.97 -0.02 0.77 16 9 N -0.54 -10.18 4.65 -236.12 -1.10 -11.28 16 10 C 0.06 0.98 5.31 -3.83 -0.02 0.96 16 11 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 12 C -0.11 -2.66 5.02 -26.60 -0.13 -2.79 16 13 C 0.05 1.40 2.27 -91.69 -0.21 1.19 16 14 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.51 -14.32 8.56 -34.44 -0.29 -14.62 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.55 11.35 55.43 0.63 -24.92 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.07 1.56 4.68 -3.83 -0.02 1.54 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.40 6.72 -52.49 -0.35 1.04 16 31 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 32 H 0.11 2.05 4.99 -51.93 -0.26 1.79 16 33 H 0.06 0.82 6.37 -51.93 -0.33 0.49 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.35 8.01 -51.93 -0.42 0.93 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -30.31 329.60 -8.70 -39.02 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.71 Total: -0.88 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.80 Total: -9.94 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.47 Total: -36.20 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.67 Total: -13.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.31 -8.70 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930921309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.945 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds