Wall clock time and date at job start Mon Mar 30 2020 19:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46744 * 2 1 4 4 C 1.52999 * 109.47319 * 240.00116 * 2 1 3 5 5 C 1.52998 * 109.47239 * 174.99826 * 4 2 1 6 6 C 1.50698 * 109.47261 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00090 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00289 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00178 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99759 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46988 * 90.00013 * 10 8 6 12 12 H 1.48498 * 109.47048 * 210.00089 * 10 8 6 13 13 H 1.48505 * 109.46995 * 330.00109 * 10 8 6 14 14 N 1.46898 * 109.47326 * 120.00032 * 2 1 3 15 15 C 1.46756 * 110.99788 * 295.00284 * 14 2 1 16 16 C 1.53774 * 109.25847 * 188.36932 * 15 14 2 17 17 H 1.08994 * 111.68907 * 180.29037 * 16 15 14 18 18 C 1.53829 * 107.91427 * 57.14407 * 16 15 14 19 19 O 1.43998 * 108.48717 * 301.12760 * 18 16 15 20 20 C 1.42819 * 115.64619 * 297.43758 * 19 18 16 21 21 C 1.53831 * 109.12801 * 62.96097 * 20 19 18 22 22 H 1.09001 * 111.69113 * 182.02528 * 21 20 19 23 23 C 1.46746 * 111.00155 * 60.68013 * 14 2 1 24 24 C 1.52566 * 106.54652 * 302.55561 * 16 15 14 25 25 O 1.20761 * 123.06268 * 237.95427 * 24 16 15 26 26 H 1.08994 * 109.47337 * 299.99858 * 1 2 3 27 27 H 1.08997 * 109.47282 * 59.99964 * 1 2 3 28 28 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47029 * 295.00153 * 4 2 1 30 30 H 1.09007 * 109.46973 * 54.99763 * 4 2 1 31 31 H 1.09001 * 109.46907 * 299.99866 * 5 4 2 32 32 H 1.08995 * 109.47248 * 59.99737 * 5 4 2 33 33 H 0.96996 * 119.99613 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.50276 * 308.29958 * 15 14 2 35 35 H 1.08993 * 109.50788 * 68.38665 * 15 14 2 36 36 H 1.09008 * 109.52989 * 61.61753 * 18 16 15 37 37 H 1.08997 * 109.52749 * 181.82652 * 18 16 15 38 38 H 1.09000 * 109.53007 * 303.06262 * 20 19 18 39 39 H 1.09003 * 109.58339 * 182.88974 * 20 19 18 40 40 H 1.08997 * 109.50908 * 291.55296 * 23 14 2 41 41 H 1.08998 * 109.50504 * 51.69220 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3230 -2.5445 7 1 3.3687 -1.8035 -3.2136 8 6 5.4184 -1.3591 -2.8164 9 7 5.8567 -1.9781 -3.8907 10 14 6.6265 -0.5285 -1.6587 11 1 7.0621 -1.4966 -0.6202 12 1 7.8082 -0.0622 -2.4276 13 1 5.9694 0.6333 -1.0078 14 7 2.0197 -0.6925 1.1994 15 6 1.6490 0.0384 2.4168 16 6 2.3535 -0.5994 3.6257 17 1 2.1010 -0.0886 4.5548 18 6 3.8680 -0.5761 3.3572 19 8 4.1280 -1.3072 2.1442 20 6 3.7817 -2.6925 2.1710 21 6 2.2632 -2.8285 2.3755 22 1 1.9570 -3.8728 2.4380 23 6 1.5625 -2.0867 1.2252 24 6 1.9285 -2.0645 3.6530 25 8 1.3772 -2.5730 4.5995 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8531 0.4371 -1.3573 32 1 3.9994 -1.0726 -0.4260 33 1 6.8073 -2.0037 -4.0817 34 1 1.9570 1.0799 2.3240 35 1 0.5692 -0.0108 2.5563 36 1 4.2046 0.4559 3.2572 37 1 4.3923 -1.0527 4.1856 38 1 4.3053 -3.1832 2.9914 39 1 4.0654 -3.1583 1.2272 40 1 0.4837 -2.1132 1.3786 41 1 1.8083 -2.5679 0.2786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:48 Heat of formation + Delta-G solvation = -86.059109 kcal Electronic energy + Delta-G solvation = -22370.885552 eV Core-core repulsion = 19250.450070 eV Total energy + Delta-G solvation = -3120.435483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03375 -39.35673 -38.23238 -35.52737 -34.21489 -33.89905 -32.05706 -30.04151 -27.78803 -27.02859 -25.25024 -24.18923 -23.68349 -22.51725 -20.79693 -19.20953 -18.71590 -17.70523 -17.11390 -16.90056 -16.33810 -16.32199 -16.21292 -15.62892 -15.32652 -15.00880 -14.81880 -14.53819 -14.29349 -14.11893 -13.51973 -13.49183 -13.19598 -13.11525 -12.92946 -12.80221 -12.67420 -12.24987 -11.99658 -11.79024 -11.70554 -11.33724 -11.29274 -11.21640 -10.94224 -10.63017 -10.52222 -10.32339 -8.81738 -8.18404 -6.19008 0.75411 1.45345 1.47063 1.61223 2.47719 2.75769 2.91191 3.10835 3.19791 3.52991 3.63522 3.86773 3.96362 4.04860 4.08271 4.34939 4.39395 4.45382 4.51822 4.52435 4.59778 4.65250 4.71062 4.76552 4.82836 4.85637 4.93605 4.98905 5.03177 5.06356 5.14739 5.33240 5.46731 5.73584 5.82018 5.92845 6.20570 6.31833 6.39034 6.44353 6.47337 6.91119 7.45655 8.98614 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.007315 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.966343 B = 3826.679936 C = 4396.775026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 H 0.084 0.916 4 C -0.089 4.089 5 C 0.003 3.997 6 C -0.522 4.522 7 H 0.026 0.974 8 C 0.003 3.997 9 N -0.959 5.959 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.295 1.295 13 H -0.247 1.247 14 N -0.519 5.519 15 C 0.072 3.928 16 C -0.163 4.163 17 H 0.130 0.870 18 C 0.077 3.923 19 O -0.359 6.359 20 C 0.083 3.917 21 C -0.169 4.169 22 H 0.118 0.882 23 C 0.070 3.930 24 C 0.366 3.634 25 O -0.484 6.484 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 4.616 17.453 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 H 0.102 0.898 4 C -0.127 4.127 5 C -0.034 4.034 6 C -0.560 4.560 7 H 0.044 0.956 8 C -0.192 4.192 9 N -0.601 5.601 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.222 1.222 13 H -0.170 1.170 14 N -0.243 5.243 15 C -0.056 4.056 16 C -0.182 4.182 17 H 0.148 0.852 18 C 0.000 4.000 19 O -0.276 6.276 20 C 0.005 3.995 21 C -0.189 4.189 22 H 0.136 0.864 23 C -0.058 4.058 24 C 0.244 3.756 25 O -0.359 6.359 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.854 4.401 17.676 19.836 hybrid contribution -0.315 -0.299 -0.065 0.439 sum -8.169 4.103 17.611 19.842 Atomic orbital electron populations 1.22420 0.96705 1.01953 1.02645 1.21657 0.92610 0.98040 0.89209 0.89817 1.21450 0.96538 0.99157 0.95529 1.19369 0.93927 0.95133 0.94995 1.21681 0.92285 1.33422 1.08640 0.95610 1.25944 1.00690 0.95855 0.96734 1.70096 1.14890 1.46252 1.28903 0.85609 0.77599 0.80365 0.78691 1.19316 1.22210 1.17022 1.61557 1.60272 1.00849 1.01591 1.22123 0.96980 0.98915 0.87608 1.23326 0.99583 0.93856 1.01460 0.85176 1.22933 0.90832 0.99091 0.87169 1.88232 1.83184 1.20444 1.35762 1.22525 0.90505 0.83880 1.02610 1.23331 0.99778 1.01241 0.94505 0.86384 1.22067 0.96058 0.89780 0.97939 1.25758 0.72012 0.91696 0.86176 1.90369 1.33739 1.74017 1.37754 0.91543 0.91721 0.92953 0.93296 0.93607 0.97827 0.93900 0.92979 0.87938 0.94196 0.86243 0.92529 0.92509 0.88749 0.94259 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 8.55 71.98 0.62 -3.36 16 2 C 0.09 2.56 2.35 44.91 0.11 2.66 16 3 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 4 C -0.09 -3.28 4.41 30.59 0.14 -3.15 16 5 C 0.00 0.14 3.93 29.85 0.12 0.26 16 6 C -0.52 -30.17 9.66 25.60 0.25 -29.92 16 7 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 8 C 0.00 0.19 5.47 84.66 0.46 0.65 16 9 N -0.96 -61.26 13.96 21.45 0.30 -60.96 16 10 Si 0.95 45.94 27.47 68.60 1.88 47.82 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 14 N -0.52 -13.45 2.00 -868.66 -1.73 -15.18 16 15 C 0.07 1.43 4.41 86.59 0.38 1.81 16 16 C -0.16 -3.13 3.80 -10.40 -0.04 -3.16 16 17 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.08 1.56 6.37 72.26 0.46 2.02 16 19 O -0.36 -10.25 8.15 -148.98 -1.21 -11.47 16 20 C 0.08 2.15 6.27 72.26 0.45 2.61 16 21 C -0.17 -4.07 3.84 -10.40 -0.04 -4.11 16 22 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 23 C 0.07 1.80 4.08 86.59 0.35 2.15 16 24 C 0.37 8.89 5.95 30.31 0.18 9.07 16 25 O -0.48 -14.34 17.98 -1.45 -0.03 -14.37 16 26 H 0.07 1.25 6.71 -2.39 -0.02 1.23 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.19 6.61 -2.39 -0.02 1.18 16 29 H 0.05 1.83 5.97 -2.39 -0.01 1.82 16 30 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.00 0.16 7.20 -2.39 -0.02 0.14 16 32 H 0.04 1.96 6.60 -2.39 -0.02 1.95 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 35 H 0.04 0.76 6.87 -2.39 -0.02 0.74 16 36 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.04 0.94 6.79 -2.39 -0.02 0.93 16 41 H 0.08 2.52 5.78 -2.39 -0.01 2.51 16 Total: -1.00 -70.23 309.46 3.59 -66.64 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.95 Total: 9.99 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 3.43 Total: -22.48 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.43 Total: -76.15 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -1.24 Total: -25.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.82 kcal Total: -70.23 3.59 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.419 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds