Wall clock time and date at job start Mon Mar 30 2020 19:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.86860 * 2 1 4 4 C 1.54099 * 109.88041 * 121.00886 * 2 1 3 5 5 C 1.54810 * 104.18826 * 117.39155 * 4 2 1 6 6 C 1.55000 * 102.09141 * 339.12218 * 5 4 2 7 7 H 1.09001 * 110.61625 * 278.51558 * 6 5 4 8 8 C 1.53006 * 110.61698 * 155.52150 * 6 5 4 9 9 N 1.46898 * 109.46752 * 173.81081 * 8 6 5 10 10 C 1.46904 * 110.99873 * 200.19019 * 9 8 6 11 11 C 1.50697 * 109.47478 * 164.27810 * 10 9 8 12 12 H 1.08003 * 119.99463 * 4.85879 * 11 10 9 13 13 C 1.37870 * 120.00475 * 184.85803 * 11 10 9 14 14 N 1.31514 * 120.00268 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99829 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47182 * 90.00194 * 15 13 11 17 17 H 1.48506 * 109.47432 * 210.00024 * 15 13 11 18 18 H 1.48504 * 109.47339 * 329.99932 * 15 13 11 19 19 C 1.46901 * 110.99981 * 76.24009 * 9 8 6 20 20 C 1.53001 * 109.47106 * 56.84819 * 19 9 8 21 21 C 1.52995 * 117.50133 * 243.17143 * 20 19 9 22 22 C 1.52993 * 60.00149 * 252.51513 * 21 20 19 23 23 O 1.43748 * 109.87828 * 238.84236 * 2 1 3 24 24 H 1.09003 * 109.46782 * 298.98929 * 1 2 3 25 25 H 1.08998 * 109.46791 * 58.98935 * 1 2 3 26 26 H 1.08999 * 109.46661 * 178.99044 * 1 2 3 27 27 H 1.09006 * 109.47119 * 181.00946 * 3 2 1 28 28 H 1.08997 * 109.47536 * 301.00546 * 3 2 1 29 29 H 1.08998 * 109.47025 * 61.01404 * 3 2 1 30 30 H 1.09000 * 110.48946 * 358.71799 * 4 2 1 31 31 H 1.08992 * 110.48998 * 236.06921 * 4 2 1 32 32 H 1.08997 * 110.91121 * 220.91939 * 5 4 2 33 33 H 1.08999 * 110.93535 * 97.32824 * 5 4 2 34 34 H 1.08994 * 109.46991 * 293.81362 * 8 6 5 35 35 H 1.08997 * 109.46775 * 53.81475 * 8 6 5 36 36 H 1.09003 * 109.47464 * 284.28150 * 10 9 8 37 37 H 1.08999 * 109.46866 * 44.27783 * 10 9 8 38 38 H 0.96999 * 120.00204 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.46708 * 176.85018 * 19 9 8 40 40 H 1.08994 * 109.46692 * 296.85176 * 19 9 8 41 41 H 1.08999 * 115.54783 * 28.88239 * 20 19 9 42 42 H 1.09009 * 117.49501 * 0.02562 * 21 20 19 43 43 H 1.08995 * 117.50170 * 145.02118 * 21 20 19 44 44 H 1.09008 * 117.49674 * 252.51205 * 22 21 20 45 45 H 1.08999 * 117.50427 * 107.49022 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0541 -0.7466 1.2421 5 6 2.8325 -1.9516 0.6601 6 6 2.2280 -2.0723 -0.7620 7 1 1.2813 -2.6118 -0.7322 8 6 3.2127 -2.7612 -1.7092 9 7 2.5625 -2.9957 -3.0054 10 6 3.2596 -4.0444 -3.7620 11 6 2.3747 -4.5288 -4.8814 12 1 1.4256 -4.0476 -5.0663 13 6 2.7765 -5.5862 -5.6696 14 7 2.0044 -6.0087 -6.6469 15 14 4.4183 -6.4180 -5.3503 16 1 4.2299 -7.5313 -4.3858 17 1 4.9580 -6.9541 -6.6257 18 1 5.3723 -5.4299 -4.7856 19 6 2.4774 -1.7530 -3.7842 20 6 3.8794 -1.1680 -3.9658 21 6 4.1594 0.2017 -3.3443 22 6 4.0200 0.0643 -4.8616 23 8 2.0188 -0.6994 -1.1568 24 1 -0.3633 0.4981 0.8989 25 1 -0.3633 0.5295 -0.8808 26 1 -0.3632 -1.0275 -0.0181 27 1 3.1399 1.4314 -0.0181 28 1 1.6757 1.9606 -0.8808 29 1 1.7052 1.9498 0.8989 30 1 1.2239 -1.0907 1.8589 31 1 2.7198 -0.1055 1.8199 32 1 2.6433 -2.8542 1.2411 33 1 3.9004 -1.7389 0.6120 34 1 4.0862 -2.1249 -1.8507 35 1 3.5228 -3.7141 -1.2806 36 1 4.1826 -3.6401 -4.1775 37 1 3.4939 -4.8765 -3.0980 38 1 2.2870 -6.7528 -7.2011 39 1 2.0429 -1.9655 -4.7610 40 1 1.8499 -1.0354 -3.2557 41 1 4.6936 -1.8927 -3.9753 42 1 3.3448 0.6859 -2.8055 43 1 5.1579 0.3784 -2.9445 44 1 4.9270 0.1506 -5.4602 45 1 3.1137 0.4583 -5.3216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184658607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:30:56 Heat of formation + Delta-G solvation = -42.242815 kcal Electronic energy + Delta-G solvation = -22006.202443 eV Core-core repulsion = 19023.500072 eV Total energy + Delta-G solvation = -2982.702371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91353 -39.31015 -36.67677 -34.76863 -33.82081 -32.89788 -30.22857 -28.89092 -28.20446 -26.42881 -24.11611 -23.15668 -23.03000 -22.00606 -20.84890 -20.51284 -18.85371 -17.65063 -16.78402 -16.58283 -16.17875 -16.06965 -15.59888 -15.39561 -14.79981 -14.65573 -14.43902 -14.22114 -13.82724 -13.53516 -13.27991 -13.07130 -12.88233 -12.86372 -12.73545 -12.56412 -12.38541 -12.23894 -12.20849 -12.19603 -11.98096 -11.65410 -11.45847 -11.39137 -11.32473 -11.11240 -10.77982 -10.62438 -10.35855 -8.88860 -8.26223 -6.28082 1.33405 1.35326 1.45988 2.35075 2.94213 3.00830 3.06764 3.29389 3.73786 3.89086 3.95870 4.00942 4.11051 4.17902 4.24578 4.32036 4.34050 4.54826 4.58330 4.62841 4.65460 4.73969 4.78615 4.81495 4.86668 4.93208 4.99473 5.00524 5.04898 5.08344 5.09968 5.12110 5.17466 5.21929 5.32376 5.34618 5.37626 5.47283 5.51630 5.61001 6.04928 6.29723 6.46421 6.72898 6.77478 7.34591 8.91074 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.005560 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.075549 B = 5034.789348 C = 5500.667627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.143 4.143 6 C 0.090 3.910 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.537 5.537 10 C 0.172 3.828 11 C -0.509 4.509 12 H 0.032 0.968 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.947 3.053 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.253 1.253 19 C 0.107 3.893 20 C -0.192 4.192 21 C -0.143 4.143 22 C -0.181 4.181 23 O -0.370 6.370 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.078 0.922 36 H -0.009 1.009 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 14.458 17.802 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 C -0.194 4.194 4 C -0.174 4.174 5 C -0.181 4.181 6 C 0.032 3.968 7 H 0.073 0.927 8 C -0.071 4.071 9 N -0.259 5.259 10 C 0.044 3.956 11 C -0.547 4.547 12 H 0.050 0.950 13 C -0.190 4.190 14 N -0.592 5.592 15 Si 0.771 3.229 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.177 1.177 19 C -0.021 4.021 20 C -0.212 4.212 21 C -0.179 4.179 22 C -0.219 4.219 23 O -0.290 6.290 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.009 0.991 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.610 14.251 17.560 22.901 hybrid contribution 0.964 -0.740 -0.739 1.422 sum 4.574 13.511 16.821 22.054 Atomic orbital electron populations 1.22243 0.95239 1.01746 1.02533 1.22305 0.93614 0.93863 0.85824 1.21867 1.01468 0.93343 1.02681 1.22982 1.00615 0.96667 0.97178 1.23095 1.00809 0.99588 0.94641 1.23021 0.97147 0.83475 0.93126 0.92679 1.22231 0.95502 0.99501 0.89837 1.62049 1.52480 1.07476 1.03912 1.19952 0.92491 0.90597 0.92512 1.21249 1.04612 1.15346 1.13521 0.95003 1.25831 1.01100 0.97503 0.94564 1.70059 1.39736 1.28332 1.21072 0.85715 0.79821 0.79345 0.78038 1.18809 1.20815 1.17704 1.21563 0.93752 0.90289 0.96533 1.22781 0.99562 0.91611 1.07270 1.22933 1.02830 0.97776 0.94393 1.22934 1.03100 1.01706 0.94110 1.88959 1.85983 1.20439 1.33637 0.89907 0.93132 0.93566 0.92082 0.92897 0.89666 0.89894 0.89024 0.89373 0.90255 0.93397 0.90350 0.99131 0.95643 0.92541 0.94505 0.89603 0.90202 0.88006 0.88515 0.88564 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.61 71.98 0.62 -2.60 16 2 C 0.08 1.71 1.19 -10.42 -0.01 1.69 16 3 C -0.14 -2.30 8.67 71.98 0.62 -1.67 16 4 C -0.14 -2.28 6.27 31.58 0.20 -2.08 16 5 C -0.14 -2.88 6.59 31.90 0.21 -2.67 16 6 C 0.09 2.56 3.44 31.28 0.11 2.66 16 7 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 8 C 0.06 1.93 4.70 86.31 0.41 2.33 16 9 N -0.54 -23.18 4.58 -900.80 -4.13 -27.31 16 10 C 0.17 8.48 3.67 85.56 0.31 8.80 16 11 C -0.51 -30.54 9.12 25.60 0.23 -30.30 16 12 H 0.03 2.15 7.62 -2.91 -0.02 2.13 16 13 C 0.01 0.40 5.47 84.65 0.46 0.86 16 14 N -0.95 -61.06 13.96 21.44 0.30 -60.76 16 15 Si 0.95 45.14 27.37 68.60 1.88 47.02 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.25 -11.31 6.68 99.48 0.66 -10.65 16 19 C 0.11 4.40 5.19 86.30 0.45 4.85 16 20 C -0.19 -6.84 3.84 -10.80 -0.04 -6.88 16 21 C -0.14 -3.95 9.95 30.59 0.30 -3.65 16 22 C -0.18 -5.47 10.25 30.59 0.31 -5.16 16 23 O -0.37 -10.31 7.34 -148.98 -1.09 -11.40 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.04 8.11 -2.39 -0.02 1.02 16 27 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.22 7.70 -2.39 -0.02 1.20 16 31 H 0.09 1.21 7.70 -2.39 -0.02 1.19 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.52 8.06 -2.39 -0.02 1.51 16 34 H 0.05 1.57 6.29 -2.39 -0.02 1.56 16 35 H 0.08 2.52 7.64 -2.39 -0.02 2.51 16 36 H -0.01 -0.44 5.53 -2.39 -0.01 -0.45 16 37 H 0.03 1.23 6.84 -2.39 -0.02 1.21 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.04 1.79 7.03 -2.39 -0.02 1.78 16 40 H 0.09 3.36 5.71 -2.39 -0.01 3.35 16 41 H 0.08 3.11 6.36 -2.39 -0.02 3.10 16 42 H 0.10 2.80 7.23 -2.38 -0.02 2.78 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 45 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -68.41 342.64 2.03 -66.38 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.89 Total: 19.89 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.19 Total: -33.81 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.83 Total: -88.07 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.09 Total: -11.40 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -68.41 2.03 -66.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184658607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.135 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds