Wall clock time and date at job start Mon Mar 30 2020 19:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 C 1.53001 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46901 * 185.36125 * 4 3 2 6 6 H 1.08993 * 109.47647 * 54.62482 * 5 4 3 7 7 C 1.52992 * 109.47316 * 294.61959 * 5 4 3 8 8 C 1.53005 * 109.47227 * 294.52680 * 7 5 4 9 9 C 1.50709 * 109.46878 * 174.62011 * 5 4 3 10 10 O 1.21284 * 119.99791 * 0.02562 * 9 5 4 11 11 N 1.34776 * 120.00210 * 179.97438 * 9 5 4 12 12 C 1.46496 * 120.00165 * 180.02562 * 11 9 5 13 13 C 1.52997 * 109.47161 * 175.76564 * 12 11 9 14 14 C 1.50700 * 115.55088 * 55.41466 * 13 12 11 15 15 H 1.08000 * 119.99824 * 265.70850 * 14 13 12 16 16 C 1.37870 * 120.00029 * 85.70841 * 14 13 12 17 17 N 1.31512 * 120.00319 * 2.31767 * 16 14 13 18 18 Si 1.86807 * 119.99799 * 182.31289 * 16 14 13 19 19 H 1.48492 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46973 * 120.00223 * 18 16 14 21 21 H 1.48498 * 109.47195 * 239.99954 * 18 16 14 22 22 C 1.53006 * 117.49931 * 269.74249 * 13 12 11 23 23 C 1.53003 * 117.50039 * 201.08599 * 13 12 11 24 24 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46820 * 300.00182 * 1 2 3 26 26 H 1.09005 * 109.46997 * 60.00012 * 1 2 3 27 27 H 1.09001 * 109.47257 * 240.00059 * 2 1 3 28 28 H 1.09001 * 109.47066 * 120.00502 * 2 1 3 29 29 H 1.09001 * 109.46891 * 59.99835 * 3 2 1 30 30 H 1.09001 * 109.47445 * 300.00270 * 3 2 1 31 31 H 1.09001 * 109.47123 * 65.36047 * 4 3 2 32 32 H 1.08997 * 109.46858 * 305.35775 * 4 3 2 33 33 H 1.09004 * 109.47346 * 174.52793 * 7 5 4 34 34 H 1.08998 * 109.47094 * 54.52714 * 7 5 4 35 35 H 1.09009 * 109.47103 * 183.48344 * 8 7 5 36 36 H 1.08994 * 109.47379 * 63.47842 * 8 7 5 37 37 H 1.09007 * 109.46765 * 303.47699 * 8 7 5 38 38 H 0.97002 * 119.99625 * 0.02562 * 11 9 5 39 39 H 1.09002 * 109.47252 * 295.76963 * 12 11 9 40 40 H 1.09004 * 109.46691 * 55.76511 * 12 11 9 41 41 H 0.96999 * 120.00208 * 185.00937 * 17 16 14 42 42 H 1.08997 * 117.49635 * 0.02562 * 22 13 12 43 43 H 1.09002 * 117.49869 * 145.01998 * 22 13 12 44 44 H 1.08998 * 117.49586 * 214.98201 * 23 13 12 45 45 H 1.08999 * 117.49681 * 359.97076 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0800 2.8787 0.1354 6 1 3.6398 3.3390 1.0199 7 6 3.6839 3.6792 -1.1068 8 6 4.4105 3.1157 -2.3297 9 6 5.5811 2.8683 0.2689 10 8 6.1837 1.8158 0.2569 11 7 6.2540 4.0286 0.4006 12 6 7.7132 4.0186 0.5298 13 6 8.2326 5.4574 0.5579 14 6 7.6319 6.3447 1.6176 15 1 6.7839 6.9702 1.3810 16 6 8.1650 6.3578 2.8890 17 7 9.2255 5.6307 3.1651 18 14 7.3808 7.4086 4.2197 19 1 6.2084 8.1258 3.6573 20 1 6.9385 6.5399 5.3399 21 1 8.3719 8.3950 4.7198 22 6 8.5977 6.1030 -0.7804 23 6 9.7013 5.6855 0.1948 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9338 1.0139 -0.9332 32 1 3.9330 0.8479 0.8390 33 1 3.9611 4.7243 -0.9691 34 1 2.6070 3.6058 -1.2582 35 1 4.1767 3.7240 -3.2035 36 1 4.0866 2.0897 -2.5040 37 1 5.4860 3.1321 -2.1528 38 1 5.7720 4.8704 0.4098 39 1 7.9927 3.5132 1.4542 40 1 8.1494 3.4913 -0.3187 41 1 9.5572 5.5828 4.0753 42 1 8.4675 5.5028 -1.6808 43 1 8.4038 7.1696 -0.8942 44 1 10.2329 6.4776 0.7221 45 1 10.2976 4.8105 -0.0637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404074058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:16 Heat of formation + Delta-G solvation = -57.250653 kcal Electronic energy + Delta-G solvation = -21036.167114 eV Core-core repulsion = 18052.813954 eV Total energy + Delta-G solvation = -2983.353160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57118 -36.97643 -36.16584 -34.09275 -33.11175 -31.97865 -30.04284 -27.52183 -25.92866 -25.02305 -23.43727 -21.96744 -21.14486 -20.54599 -19.48611 -18.58478 -16.55933 -16.05702 -15.86852 -15.20680 -15.01318 -14.68599 -14.19860 -14.02870 -13.67562 -13.25471 -12.96497 -12.86711 -12.70936 -12.53260 -12.20112 -11.80660 -11.62062 -11.48078 -11.36425 -11.02006 -10.98918 -10.94519 -10.86499 -10.76189 -10.53700 -10.42588 -10.28106 -10.23293 -9.57261 -9.11068 -9.02590 -8.50285 -8.24918 -7.99766 -6.09972 -4.19531 3.23250 3.31242 3.32552 3.33941 3.93725 4.33788 4.72582 4.84771 4.95103 5.05943 5.09167 5.14642 5.19423 5.34230 5.39935 5.47652 5.58741 5.69194 5.69768 5.76285 5.81939 5.90643 5.95855 6.02290 6.04700 6.11665 6.15806 6.23012 6.33018 6.34891 6.39623 6.49980 6.55991 6.57925 6.71974 6.91273 7.12114 7.34351 7.39041 7.54055 7.78564 8.32467 8.40094 8.82489 8.97944 9.48189 10.98039 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004563 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.621896 B = 6134.650227 C = 6794.109098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.110 4.110 6 H 0.092 0.908 7 C -0.115 4.115 8 C -0.155 4.155 9 C 0.510 3.490 10 O -0.562 6.562 11 N -0.701 5.701 12 C 0.164 3.836 13 C 0.025 3.975 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.211 4.211 23 C -0.144 4.144 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.401 0.599 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 -5.350 -7.184 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.152 4.152 8 C -0.212 4.212 9 C 0.295 3.705 10 O -0.441 6.441 11 N -0.349 5.349 12 C 0.041 3.959 13 C 0.024 3.976 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.249 4.249 23 C -0.182 4.182 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.812 -6.081 -7.045 15.835 hybrid contribution -0.446 0.991 0.937 1.435 sum -13.257 -5.090 -6.108 15.459 Atomic orbital electron populations 1.21780 0.96182 1.01314 1.01667 1.21529 0.95450 0.97218 1.02095 1.21687 0.95608 0.96537 1.01957 1.21406 0.94172 0.94807 1.03382 1.21407 0.93292 0.98389 1.00047 0.88950 1.21521 1.00670 0.99270 0.93781 1.21846 1.01169 1.00864 0.97365 1.20449 0.89413 0.84115 0.76511 1.90636 1.70374 1.31247 1.51882 1.45977 1.08961 1.08259 1.71726 1.20896 0.78034 0.97534 0.99472 1.19040 0.94952 0.91387 0.92200 1.20373 1.15130 1.23983 0.94189 0.92182 1.24982 0.94086 0.95341 0.98589 1.70005 1.21736 1.39664 1.19547 0.86604 0.79389 0.80384 0.82032 1.19680 1.20971 1.21007 1.23043 1.08103 0.99890 0.93822 1.22458 0.92505 1.01468 1.01778 0.93037 0.92832 0.92892 0.92109 0.92029 0.92082 0.91874 0.91217 0.91292 0.91370 0.91054 0.92819 0.92509 0.92321 0.76395 0.91754 0.94449 0.92935 0.91766 0.90458 0.89589 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.21 4.85 -26.73 -0.13 -1.34 16 4 C -0.10 -1.28 3.91 -26.73 -0.10 -1.39 16 5 C -0.11 -1.52 2.50 -91.77 -0.23 -1.75 16 6 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.11 -1.34 5.45 -26.73 -0.15 -1.49 16 8 C -0.16 -1.92 9.35 37.16 0.35 -1.57 16 9 C 0.51 9.46 5.57 -10.98 -0.06 9.40 16 10 O -0.56 -12.42 15.91 5.55 0.09 -12.33 16 11 N -0.70 -13.68 5.32 -60.29 -0.32 -14.00 16 12 C 0.16 3.72 5.56 -4.05 -0.02 3.70 16 13 C 0.02 0.58 1.60 -155.66 -0.25 0.33 16 14 C -0.50 -12.68 8.13 -34.44 -0.28 -12.96 16 15 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 16 C 0.07 1.95 5.42 -17.82 -0.10 1.85 16 17 N -0.87 -24.13 12.67 55.43 0.70 -23.43 16 18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.21 -4.43 9.93 -26.69 -0.27 -4.70 16 23 C -0.14 -3.32 9.19 -26.69 -0.25 -3.57 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 31 H 0.07 0.94 6.42 -51.93 -0.33 0.61 16 32 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 33 H 0.07 0.79 7.72 -51.93 -0.40 0.39 16 34 H 0.07 0.69 6.45 -51.93 -0.34 0.36 16 35 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.67 6.63 -51.93 -0.34 0.33 16 37 H 0.06 0.88 6.93 -51.93 -0.36 0.52 16 38 H 0.40 7.33 7.51 -40.82 -0.31 7.02 16 39 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 40 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -28.56 358.48 -8.73 -37.28 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.30 Total: 7.41 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.27 Total: -15.65 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.38 Total: -37.43 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.56 -8.73 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.968 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds