Wall clock time and date at job start Mon Mar 30 2020 19:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.08999 * 109.46774 * 305.00291 * 3 2 1 5 5 C 1.53000 * 109.46836 * 65.00191 * 3 2 1 6 6 C 1.53000 * 109.46836 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47475 * 299.99999 * 6 5 3 8 8 C 1.53000 * 109.47198 * 59.99606 * 7 6 5 9 9 C 1.53000 * 109.47229 * 300.00545 * 8 7 6 10 10 H 1.08990 * 109.46997 * 300.00116 * 9 8 7 11 11 C 1.50694 * 109.46936 * 179.97438 * 9 8 7 12 12 O 1.21288 * 120.00410 * 247.04180 * 11 9 8 13 13 N 1.34781 * 120.00200 * 67.04344 * 11 9 8 14 14 C 1.46490 * 120.00372 * 184.62178 * 13 11 9 15 15 C 1.53003 * 109.47149 * 85.01416 * 14 13 11 16 16 C 1.46497 * 119.99672 * 4.62623 * 13 11 9 17 17 C 1.50696 * 109.47472 * 95.36823 * 16 13 11 18 18 H 1.08006 * 120.00068 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00459 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99449 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47224 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47296 * 119.99969 * 21 19 17 24 24 H 1.48496 * 109.46792 * 239.99969 * 21 19 17 25 25 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47202 * 299.99833 * 1 2 3 27 27 H 1.08998 * 109.47267 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.46984 * 239.99729 * 2 1 3 29 29 H 1.09001 * 109.47079 * 120.00384 * 2 1 3 30 30 H 1.08990 * 109.47730 * 59.99957 * 5 3 2 31 31 H 1.09007 * 109.47135 * 299.99454 * 5 3 2 32 32 H 1.09001 * 109.47470 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.47269 * 60.00177 * 6 5 3 34 34 H 1.08997 * 109.47307 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46539 * 300.00109 * 7 6 5 36 36 H 1.09002 * 109.46543 * 60.00436 * 8 7 6 37 37 H 1.08996 * 109.46981 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47588 * 205.01704 * 14 13 11 39 39 H 1.09002 * 109.47451 * 325.01300 * 14 13 11 40 40 H 1.09003 * 109.46930 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47000 * 299.99842 * 15 14 13 42 42 H 1.08997 * 109.46994 * 60.00356 * 15 14 13 43 43 H 1.09002 * 109.47277 * 215.37509 * 16 13 11 44 44 H 1.09005 * 109.47234 * 335.37226 * 16 13 11 45 45 H 0.97003 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1459 3.5687 1.3077 7 6 3.6707 3.5701 1.1822 8 6 4.0755 2.8860 -0.1251 9 6 3.5649 1.4437 -0.1254 10 1 3.9990 0.9044 0.7164 11 6 3.9630 0.7702 -1.4133 12 8 3.1136 0.4468 -2.2165 13 7 5.2631 0.5270 -1.6728 14 6 5.6593 -0.0347 -2.9664 15 6 5.8190 1.0951 -3.9857 16 6 6.2800 0.8244 -0.6610 17 6 6.5838 -0.4231 0.1277 18 1 6.0711 -1.3456 -0.1019 19 6 7.5172 -0.3874 1.1420 20 7 8.1427 0.7354 1.4206 21 14 7.8944 -1.9340 2.1192 22 1 7.0626 -3.0550 1.6123 23 1 9.3316 -2.2762 1.9692 24 1 7.5882 -1.7003 3.5533 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0698 1.5875 2.1492 31 1 0.5489 2.1252 1.3969 32 1 1.8572 4.0563 2.2388 33 1 1.7116 4.1081 0.4659 34 1 4.0344 4.5976 1.1819 35 1 4.1049 3.0307 2.0241 36 1 3.6412 3.4253 -0.9669 37 1 5.1618 2.8865 -0.2142 38 1 6.6064 -0.5632 -2.8584 39 1 4.8931 -0.7293 -3.3110 40 1 6.1133 0.6771 -4.9483 41 1 4.8718 1.6235 -4.0938 42 1 6.5852 1.7896 -3.6412 43 1 7.1884 1.1749 -1.1510 44 1 5.9084 1.5978 0.0113 45 1 8.7991 0.7607 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355035708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:50 Heat of formation + Delta-G solvation = -72.998720 kcal Electronic energy + Delta-G solvation = -22291.343337 eV Core-core repulsion = 19307.307290 eV Total energy + Delta-G solvation = -2984.036047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95560 -37.45667 -35.24576 -33.44660 -32.77161 -31.38940 -29.61837 -28.68171 -26.97302 -23.93251 -23.40394 -22.96095 -21.72438 -20.29334 -19.53712 -18.09285 -16.62916 -16.12314 -15.60633 -14.69475 -14.52702 -14.44773 -14.24844 -13.71416 -13.58711 -13.13266 -12.97278 -12.76525 -12.38261 -12.22268 -12.11969 -11.76499 -11.51575 -11.38376 -11.22424 -11.18030 -10.92969 -10.88278 -10.75958 -10.53129 -10.43540 -10.38400 -10.14334 -9.99349 -9.88428 -9.70924 -9.46134 -8.73431 -8.47683 -7.62298 -6.17372 -4.23764 3.21331 3.30091 3.34230 3.50236 4.02110 4.34876 4.99155 5.02138 5.11049 5.15684 5.40700 5.47955 5.55111 5.63022 5.67153 5.73939 5.80181 5.85480 5.87721 5.92422 5.95272 5.99379 6.03941 6.14290 6.30829 6.32709 6.36487 6.37735 6.43349 6.47734 6.49238 6.56137 6.62361 6.65676 6.68206 6.84101 6.92220 6.97741 7.27063 7.62540 7.78144 8.08874 8.44463 8.82227 9.11962 9.43881 10.89064 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.007423 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.076067 B = 3771.348486 C = 4333.999589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.115 4.115 9 C -0.098 4.098 10 H 0.103 0.897 11 C 0.521 3.479 12 O -0.573 6.573 13 N -0.595 5.595 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.225 3.775 17 C -0.535 4.535 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.056 0.944 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 4.075 -1.581 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.080 4.080 4 H 0.089 0.911 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.152 4.152 9 C -0.119 4.119 10 H 0.121 0.879 11 C 0.310 3.690 12 O -0.454 6.454 13 N -0.325 5.325 14 C -0.008 4.008 15 C -0.221 4.221 16 C 0.105 3.895 17 C -0.574 4.574 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.037 3.982 -1.876 10.052 hybrid contribution 0.560 -0.864 0.688 1.238 sum -8.478 3.118 -1.188 9.111 Atomic orbital electron populations 1.21752 0.96700 1.00741 1.01068 1.21729 0.95113 0.96752 1.03042 1.20890 0.93497 0.96283 0.97309 0.91148 1.21655 1.00118 0.95599 0.97912 1.21548 0.96205 0.96836 1.00999 1.21500 0.95387 1.00223 0.98229 1.21685 1.02309 0.93676 0.97576 1.21266 0.96327 0.96978 0.97325 0.87857 1.20485 0.82160 0.78518 0.87832 1.90531 1.50211 1.54694 1.50012 1.48244 1.07237 1.61241 1.15786 1.21186 1.00683 0.95435 0.83530 1.22104 1.01650 0.99704 0.98602 1.19724 0.86346 0.97275 0.86156 1.21553 1.22782 0.96399 1.16668 0.92174 1.24924 0.95590 0.96324 0.96970 1.69926 1.26454 1.25618 1.30972 0.86500 0.78199 0.83284 0.79878 1.19693 1.20878 1.20830 0.93513 0.93237 0.93098 0.89738 0.92805 0.91946 0.92082 0.92524 0.92416 0.92225 0.91419 0.92548 0.89688 0.90506 0.91503 0.92572 0.92892 0.92727 0.95134 0.92597 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.13 -2.10 5.14 -26.73 -0.14 -2.24 16 3 C -0.06 -0.98 1.34 -90.62 -0.12 -1.10 16 4 H 0.07 1.19 8.02 -51.93 -0.42 0.77 16 5 C -0.12 -1.57 4.96 -26.73 -0.13 -1.70 16 6 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 7 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 8 C -0.12 -1.92 4.82 -26.73 -0.13 -2.05 16 9 C -0.10 -1.79 1.22 -91.77 -0.11 -1.90 16 10 H 0.10 2.10 7.67 -51.93 -0.40 1.70 16 11 C 0.52 10.82 6.48 -10.99 -0.07 10.74 16 12 O -0.57 -12.66 13.61 5.55 0.08 -12.59 16 13 N -0.60 -12.61 2.47 -175.07 -0.43 -13.04 16 14 C 0.12 2.19 6.13 -4.05 -0.02 2.16 16 15 C -0.16 -2.64 10.20 37.16 0.38 -2.27 16 16 C 0.22 5.28 4.59 -5.20 -0.02 5.25 16 17 C -0.54 -13.93 9.38 -34.44 -0.32 -14.26 16 18 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 21 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.61 5.68 -51.93 -0.29 1.32 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.57 5.40 -51.93 -0.28 1.29 16 38 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 39 H 0.07 1.28 7.51 -51.93 -0.39 0.89 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.06 1.32 4.00 -51.93 -0.21 1.11 16 45 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -27.53 342.83 -8.35 -35.88 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.13 Total: 3.39 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.75 Total: -10.85 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.30 Total: -36.58 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.53 -8.35 -35.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355035708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.120 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds