Wall clock time and date at job start Mon Mar 30 2020 19:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47400 * 2 1 4 4 C 1.52998 * 109.47560 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47158 * 181.58927 * 4 3 2 6 6 H 1.09004 * 109.47213 * 54.40669 * 5 4 3 7 7 C 1.53004 * 109.47018 * 174.40062 * 5 4 3 8 8 C 1.53008 * 109.47034 * 184.01921 * 7 5 4 9 9 C 1.52993 * 109.46864 * 175.01652 * 8 7 5 10 10 N 1.46892 * 109.47546 * 294.40368 * 5 4 3 11 11 C 1.46907 * 111.00284 * 101.75557 * 10 5 4 12 12 H 1.09004 * 109.40854 * 326.99564 * 11 10 5 13 13 C 1.52955 * 109.41198 * 86.78212 * 11 10 5 14 14 C 1.53225 * 109.40289 * 183.70099 * 13 11 10 15 15 C 1.51265 * 108.54310 * 305.37945 * 14 13 11 16 16 C 1.37875 * 120.85094 * 231.32297 * 15 14 13 17 17 N 1.31517 * 120.00143 * 180.02562 * 16 15 14 18 18 Si 1.86803 * 120.00089 * 0.02562 * 16 15 14 19 19 H 1.48497 * 109.46955 * 89.99714 * 18 16 15 20 20 H 1.48495 * 109.47254 * 209.99835 * 18 16 15 21 21 H 1.48504 * 109.46743 * 329.99884 * 18 16 15 22 22 C 1.51268 * 118.29919 * 51.34379 * 15 14 13 23 23 C 1.52957 * 109.41052 * 207.14019 * 11 10 5 24 24 H 1.09003 * 109.46962 * 60.00338 * 1 2 3 25 25 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47736 * 300.00385 * 1 2 3 27 27 H 1.08996 * 109.47772 * 240.00172 * 2 1 3 28 28 H 1.09003 * 109.46962 * 119.99662 * 2 1 3 29 29 H 1.09004 * 109.47130 * 59.99472 * 3 2 1 30 30 H 1.08997 * 109.47183 * 299.99926 * 3 2 1 31 31 H 1.08993 * 109.47009 * 61.59569 * 4 3 2 32 32 H 1.08999 * 109.47167 * 301.59335 * 4 3 2 33 33 H 1.08995 * 109.47019 * 304.02010 * 7 5 4 34 34 H 1.09001 * 109.46883 * 64.02362 * 7 5 4 35 35 H 1.09004 * 109.46965 * 295.01842 * 8 7 5 36 36 H 1.09004 * 109.46739 * 55.01634 * 8 7 5 37 37 H 1.08998 * 109.47330 * 300.00305 * 9 8 7 38 38 H 1.08997 * 109.47098 * 60.00412 * 9 8 7 39 39 H 1.09004 * 109.46883 * 180.02562 * 9 8 7 40 40 H 1.00900 * 110.99931 * 337.80326 * 10 5 4 41 41 H 1.08994 * 109.48552 * 303.68636 * 13 11 10 42 42 H 1.09006 * 109.47953 * 63.73114 * 13 11 10 43 43 H 1.09004 * 109.62903 * 185.65752 * 14 13 11 44 44 H 1.09011 * 109.62271 * 65.09053 * 14 13 11 45 45 H 0.96998 * 120.00130 * 180.02562 * 17 16 15 46 46 H 1.09004 * 109.62452 * 188.94109 * 22 15 14 47 47 H 1.08997 * 109.78565 * 68.46301 * 22 15 14 48 48 H 1.09001 * 109.48514 * 296.26519 * 23 11 10 49 49 H 1.08995 * 109.48939 * 56.30193 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8845 0.0407 6 1 3.6368 3.4032 0.8908 7 6 5.6034 2.8829 0.1821 8 6 6.1041 4.3219 0.3228 9 6 7.6108 4.3139 0.5883 10 7 3.7042 3.5715 -1.2022 11 6 2.5406 4.4429 -0.9910 12 1 1.8863 3.9982 -0.2412 13 6 3.0135 5.8131 -0.5026 14 6 1.7965 6.6915 -0.1942 15 6 0.9134 6.7379 -1.4214 16 6 0.4851 7.9418 -1.9392 17 7 -0.2828 7.9626 -3.0067 18 14 0.9955 9.5434 -1.1245 19 1 2.2670 10.0209 -1.7248 20 1 -0.0635 10.5636 -1.3315 21 1 1.1888 9.3189 0.3307 22 6 0.5117 5.4296 -2.0658 23 6 1.7754 4.5969 -2.3065 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9536 -0.9030 32 1 3.9330 0.9043 0.8762 33 1 5.8856 2.3119 1.0666 34 1 6.0499 2.4277 -0.7020 35 1 5.9002 4.8691 -0.5976 36 1 5.5911 4.8053 1.1542 37 1 7.8146 3.7666 1.5086 38 1 8.1237 3.8305 -0.2431 39 1 7.9673 5.3391 0.6890 40 1 3.5301 2.9090 -1.9431 41 1 3.6117 5.6906 0.4003 42 1 3.6167 6.2868 -1.2772 43 1 2.1267 7.6993 0.0576 44 1 1.2402 6.2661 0.6412 45 1 -0.5838 8.8097 -3.3711 46 1 0.0165 5.6266 -3.0166 47 1 -0.1648 4.8859 -1.4064 48 1 2.4079 5.0995 -3.0383 49 1 1.4963 3.6126 -2.6821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258755607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:46 Heat of formation + Delta-G solvation = -58.111868 kcal Electronic energy + Delta-G solvation = -21934.495711 eV Core-core repulsion = 19086.938300 eV Total energy + Delta-G solvation = -2847.557410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.63736 -36.13887 -34.86088 -33.25937 -31.85370 -29.97431 -29.43769 -27.98525 -26.10774 -24.11669 -21.82811 -21.59471 -21.24357 -20.70914 -19.94128 -19.00157 -16.03004 -15.91156 -15.11178 -14.84251 -14.41268 -14.22429 -14.04622 -13.45086 -13.33960 -13.06637 -12.82808 -12.59191 -12.49832 -12.25262 -12.01100 -11.83503 -11.57680 -11.41723 -11.23979 -11.09797 -10.97878 -10.86885 -10.75448 -10.59922 -10.45730 -10.29220 -10.27080 -10.17514 -9.93431 -9.82627 -9.45784 -8.83488 -8.54083 -8.41223 -7.75459 -6.04639 -3.94137 3.30990 3.39178 3.41153 4.43473 4.63423 4.67195 4.96481 5.08067 5.17254 5.23817 5.30030 5.32482 5.39973 5.50342 5.59459 5.72672 5.77091 5.83582 5.86559 5.92099 5.94386 5.97453 6.01560 6.07221 6.11938 6.17339 6.21630 6.31112 6.32802 6.40412 6.42776 6.52863 6.64484 6.71379 6.79707 6.88674 6.98464 7.05839 7.13497 7.18503 7.53157 7.68887 7.76841 7.81260 7.91921 8.01120 8.45806 9.03325 9.60980 11.05250 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.006241 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.434289 B = 4485.530219 C = 6085.480895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.125 4.125 4 C -0.141 4.141 5 C 0.085 3.915 6 H 0.069 0.931 7 C -0.101 4.101 8 C -0.117 4.117 9 C -0.151 4.151 10 N -0.682 5.682 11 C 0.101 3.899 12 H 0.035 0.965 13 C -0.091 4.091 14 C -0.018 4.018 15 C -0.483 4.483 16 C 0.074 3.926 17 N -0.892 5.892 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.013 3.987 23 C -0.109 4.109 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.332 0.668 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.012 0.988 45 H 0.263 0.737 46 H 0.055 0.945 47 H 0.000 1.000 48 H 0.055 0.945 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -12.672 6.119 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.163 4.163 4 C -0.180 4.180 5 C -0.025 4.025 6 H 0.087 0.913 7 C -0.139 4.139 8 C -0.155 4.155 9 C -0.208 4.208 10 N -0.313 5.313 11 C -0.007 4.007 12 H 0.053 0.947 13 C -0.129 4.129 14 C -0.056 4.056 15 C -0.502 4.502 16 C -0.128 4.128 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.193 1.193 22 C -0.025 4.025 23 C -0.147 4.147 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.150 0.850 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.018 0.982 48 H 0.074 0.926 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.859 -12.039 6.069 16.132 hybrid contribution -0.466 0.238 0.431 0.678 sum 8.392 -11.801 6.500 15.873 Atomic orbital electron populations 1.21778 0.95931 1.01161 1.02236 1.21506 0.95881 0.97066 1.01391 1.21721 0.95306 0.96489 1.02735 1.22253 0.95728 0.98108 1.01871 1.21676 0.95150 0.91982 0.93724 0.91259 1.21555 0.95017 0.96900 1.00430 1.21441 0.94205 0.97129 1.02687 1.21798 0.97273 1.01026 1.00748 1.60691 1.40153 1.24037 1.06387 1.21497 0.88607 0.93111 0.97491 0.94705 1.21562 0.98134 0.94886 0.98322 1.19778 0.93731 0.95318 0.96732 1.20034 1.28812 0.91473 1.09865 1.24841 0.94781 0.98503 0.94673 1.69840 1.34917 1.26295 1.22008 0.86673 0.78181 0.83307 0.80261 1.20420 1.21776 1.19302 1.19334 0.91756 0.93125 0.98306 1.21814 0.99618 0.97699 0.95573 0.92470 0.93142 0.92757 0.92367 0.92532 0.92094 0.91372 0.91996 0.92098 0.93040 0.92351 0.90397 0.92767 0.93560 0.93191 0.93221 0.84961 0.95212 0.92770 0.95376 0.96986 0.92725 0.92610 0.98199 0.92594 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.15 0.37 -1.29 16 2 C -0.12 -1.30 5.93 -26.73 -0.16 -1.45 16 3 C -0.13 -1.55 4.06 -26.73 -0.11 -1.66 16 4 C -0.14 -1.62 4.53 -26.73 -0.12 -1.75 16 5 C 0.09 1.14 2.00 -67.71 -0.14 1.00 16 6 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 7 C -0.10 -1.22 4.90 -26.72 -0.13 -1.35 16 8 C -0.12 -1.53 5.55 -26.73 -0.15 -1.68 16 9 C -0.15 -1.68 9.91 37.15 0.37 -1.31 16 10 N -0.68 -10.55 5.40 -99.78 -0.54 -11.09 16 11 C 0.10 1.90 1.37 -67.75 -0.09 1.81 16 12 H 0.03 0.68 6.31 -51.93 -0.33 0.35 16 13 C -0.09 -1.87 5.46 -26.64 -0.15 -2.02 16 14 C -0.02 -0.41 5.59 -27.49 -0.15 -0.57 16 15 C -0.48 -12.84 5.51 -98.93 -0.55 -13.38 16 16 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 17 N -0.89 -26.01 12.73 55.43 0.71 -25.30 16 18 Si 0.89 21.53 27.27 -169.99 -4.64 16.90 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.32 6.46 56.52 0.37 -5.96 16 22 C 0.01 0.32 5.97 -27.48 -0.16 0.15 16 23 C -0.11 -2.28 5.22 -26.63 -0.14 -2.42 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 0.97 6.69 -51.93 -0.35 0.62 16 31 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.18 7.87 -51.93 -0.41 0.77 16 36 H 0.05 0.75 7.77 -51.93 -0.40 0.34 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.33 4.93 7.51 -39.29 -0.29 4.63 16 41 H 0.03 0.56 7.28 -51.93 -0.38 0.18 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.03 0.66 4.78 -51.93 -0.25 0.42 16 44 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 1.54 7.07 -51.93 -0.37 1.17 16 47 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -27.08 364.61 -10.30 -37.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -9.92 Total: 0.58 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -1.40 Total: -23.96 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.17 Total: -36.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.64 Total: 16.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.08 -10.30 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258755607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.736 kcal (2) G-P(sol) polarization free energy of solvation -27.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds