Wall clock time and date at job start Mon Mar 30 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47941 * 2 1 4 4 C 1.50707 * 109.47264 * 240.00116 * 2 1 3 5 5 H 1.08003 * 119.99671 * 240.00170 * 4 2 1 6 6 C 1.37876 * 119.99886 * 59.99727 * 4 2 1 7 7 N 1.31510 * 119.99973 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99741 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47138 * 60.00543 * 8 6 4 10 10 H 1.48505 * 109.47110 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47502 * 300.00131 * 8 6 4 12 12 N 1.46900 * 109.47375 * 120.00192 * 2 1 3 13 13 C 1.46900 * 110.99946 * 275.00142 * 12 2 1 14 14 H 1.08996 * 109.62827 * 35.38376 * 13 12 2 15 15 C 1.54243 * 109.62720 * 274.99262 * 13 12 2 16 16 C 1.45541 * 112.40565 * 160.09980 * 15 13 12 17 17 C 1.54236 * 112.32414 * 61.98898 * 16 15 13 18 18 C 1.50553 * 108.48427 * 279.87971 * 17 16 15 19 19 H 1.09002 * 108.92118 * 333.51223 * 18 17 16 20 20 C 1.53007 * 108.83753 * 214.96596 * 18 17 16 21 21 C 1.52999 * 109.46980 * 302.54289 * 20 18 17 22 22 C 1.53005 * 109.47011 * 62.54300 * 20 18 17 23 23 C 1.52998 * 109.47204 * 182.53972 * 20 18 17 24 24 C 1.54059 * 112.41652 * 94.26858 * 18 17 16 25 25 C 1.50475 * 109.79031 * 155.86984 * 13 12 2 26 26 H 1.09001 * 109.47042 * 59.99672 * 1 2 3 27 27 H 1.08994 * 109.47647 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46841 * 300.00420 * 1 2 3 29 29 H 0.97003 * 120.00242 * 179.97438 * 7 6 4 30 30 H 1.00903 * 111.00384 * 151.04349 * 12 2 1 31 31 H 1.09008 * 108.89204 * 39.34859 * 15 13 12 32 32 H 1.08995 * 108.89948 * 280.86321 * 15 13 12 33 33 H 1.08998 * 108.89492 * 182.69249 * 16 15 13 34 34 H 1.08993 * 108.89576 * 301.27875 * 16 15 13 35 35 H 1.08994 * 109.63357 * 39.68090 * 17 16 15 36 36 H 1.09003 * 109.62735 * 160.25773 * 17 16 15 37 37 H 1.08998 * 109.47447 * 60.00251 * 21 20 18 38 38 H 1.09001 * 109.46798 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.46895 * 299.99770 * 21 20 18 40 40 H 1.08999 * 109.47306 * 57.59716 * 22 20 18 41 41 H 1.09001 * 109.47054 * 177.60012 * 22 20 18 42 42 H 1.09007 * 109.46961 * 297.59742 * 22 20 18 43 43 H 1.09004 * 109.46598 * 59.99834 * 23 20 18 44 44 H 1.08991 * 109.47167 * 180.02562 * 23 20 18 45 45 H 1.09003 * 109.47200 * 300.00661 * 23 20 18 46 46 H 1.09004 * 108.81491 * 197.41761 * 24 18 17 47 47 H 1.09004 * 108.72612 * 79.07748 * 24 18 17 48 48 H 1.09002 * 108.87673 * 334.73459 * 25 13 12 49 49 H 1.08999 * 108.87763 * 93.17939 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0078 10 1 1.8269 -0.4199 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2546 0.9298 2.2969 15 6 3.4208 0.9889 2.3257 16 6 3.3752 2.2070 3.1211 17 6 3.1048 1.9229 4.6127 18 6 1.6280 1.6943 4.7951 19 1 1.0888 2.2228 4.0089 20 6 1.2042 2.2607 6.1519 21 6 2.0245 1.5974 7.2600 22 6 1.4469 3.7712 6.1722 23 6 -0.2824 1.9799 6.3799 24 6 1.2533 0.2011 4.7393 25 6 2.0008 -0.5614 3.6287 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1618 -3.4844 30 1 2.9173 -1.1206 1.0287 31 1 3.6623 1.2492 1.2951 32 1 4.2049 0.3409 2.7171 33 1 4.3294 2.7254 3.0278 34 1 2.5849 2.8510 2.7354 35 1 3.6554 1.0345 4.9220 36 1 3.4186 2.7782 5.2111 37 1 3.0836 1.7975 7.0976 38 1 1.7229 2.0012 8.2265 39 1 1.8516 0.5213 7.2455 40 1 0.8960 4.2388 5.3561 41 1 1.1056 4.1812 7.1228 42 1 2.5120 3.9698 6.0524 43 1 -0.4552 0.9037 6.3653 44 1 -0.5843 2.3837 7.3462 45 1 -0.8667 2.4524 5.5904 46 1 0.1808 0.1140 4.5649 47 1 1.4909 -0.2555 5.7002 48 1 1.4825 -1.5006 3.4353 49 1 3.0115 -0.7827 3.9717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:54 Heat of formation + Delta-G solvation = -37.007570 kcal Electronic energy + Delta-G solvation = -22194.145134 eV Core-core repulsion = 19347.502875 eV Total energy + Delta-G solvation = -2846.642259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89604 -37.05645 -34.54192 -32.46785 -31.74538 -29.83819 -27.75038 -27.35752 -26.87745 -25.14284 -24.16716 -23.27516 -20.36932 -19.96688 -19.61726 -17.83925 -16.33023 -15.71885 -14.97820 -14.75022 -14.64404 -14.10919 -13.92852 -13.90067 -13.52520 -13.05689 -12.84880 -12.63208 -12.39071 -12.11640 -11.84622 -11.70835 -11.62399 -11.50092 -11.22150 -11.10180 -10.97312 -10.87905 -10.75905 -10.49343 -10.48038 -10.24082 -10.14213 -10.05122 -9.97086 -9.86012 -9.66958 -9.51594 -8.77939 -8.43220 -7.14795 -5.98798 -4.04885 3.32834 3.37183 3.40102 4.43009 4.65566 4.74582 4.76568 5.02547 5.16236 5.26557 5.32627 5.39707 5.46160 5.49610 5.55470 5.60182 5.65445 5.71899 5.73023 5.78631 5.84991 5.87543 5.91195 5.97052 6.07914 6.14519 6.17771 6.25738 6.30989 6.41348 6.44509 6.48467 6.52691 6.59954 6.68790 6.72014 6.83283 6.86323 6.98463 7.21836 7.31729 7.60622 7.82940 7.96979 8.33233 8.49148 8.76913 9.07426 9.60930 11.07419 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033950 B = 0.004177 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.548079 B = 6701.423539 C = 6781.187368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.684 5.684 13 C 0.094 3.906 14 H 0.071 0.929 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.074 4.074 19 H 0.068 0.932 20 C -0.067 4.067 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.108 4.108 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.003 0.997 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 3.685 17.853 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.017 4.017 14 H 0.089 0.911 15 C -0.187 4.187 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.093 4.093 19 H 0.087 0.913 20 C -0.067 4.067 21 C -0.200 4.200 22 C -0.201 4.201 23 C -0.201 4.201 24 C -0.147 4.147 25 C -0.146 4.146 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.233 3.548 17.852 18.243 hybrid contribution 1.070 0.160 -1.191 1.609 sum 2.304 3.708 16.661 17.223 Atomic orbital electron populations 1.21708 0.98111 0.99178 0.99164 1.19061 0.92353 0.92419 0.85667 0.98123 1.21259 1.31340 1.12424 0.90606 0.92409 1.24908 0.95092 0.94998 0.98963 1.69890 1.36705 1.22894 1.23442 0.86617 0.79048 0.79820 0.82225 1.20231 1.21346 1.20392 1.60918 1.31767 1.32538 1.06151 1.21234 0.95360 0.93454 0.91622 0.91114 1.21240 0.99525 0.97522 1.00431 1.20410 1.01099 0.98272 0.95080 1.21530 0.96042 1.01222 0.96180 1.21015 0.96221 0.96236 0.95814 0.91340 1.20640 0.95349 0.95151 0.95559 1.21951 0.99932 1.00683 0.97454 1.21954 1.01696 0.95141 1.01270 1.21923 0.95309 1.01840 1.00980 1.22022 1.00048 0.94271 0.98351 1.21407 0.99715 0.99404 0.94095 0.90282 0.95133 0.97813 0.92961 0.85436 0.91959 0.92944 0.93213 0.92420 0.91947 0.91873 0.92545 0.93351 0.92354 0.92693 0.93166 0.92346 0.92283 0.93293 0.92717 0.92446 0.92386 0.91255 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.18 37.15 0.34 -2.79 16 2 C 0.21 5.42 2.32 -68.86 -0.16 5.26 16 3 H 0.00 0.03 7.21 -51.93 -0.37 -0.34 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.58 7.62 -52.48 -0.40 1.18 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.67 5.93 -101.60 -0.60 -15.27 16 13 C 0.09 1.68 1.93 -68.32 -0.13 1.54 16 14 H 0.07 1.38 5.96 -51.93 -0.31 1.07 16 15 C -0.15 -2.42 4.56 -29.60 -0.13 -2.56 16 16 C -0.11 -1.55 5.27 -29.60 -0.16 -1.70 16 17 C -0.11 -1.33 3.77 -27.31 -0.10 -1.43 16 18 C -0.07 -0.89 1.07 -91.29 -0.10 -0.99 16 19 H 0.07 0.94 6.63 -51.93 -0.34 0.60 16 20 C -0.07 -0.68 0.54 -154.50 -0.08 -0.76 16 21 C -0.14 -1.32 7.97 37.16 0.30 -1.03 16 22 C -0.14 -1.38 8.19 37.16 0.30 -1.07 16 23 C -0.14 -1.43 8.02 37.16 0.30 -1.13 16 24 C -0.11 -1.38 4.08 -25.62 -0.10 -1.49 16 25 C -0.11 -1.62 5.05 -27.44 -0.14 -1.76 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.33 6.97 7.99 -39.29 -0.31 6.65 16 31 H 0.06 1.19 7.38 -51.92 -0.38 0.81 16 32 H 0.05 0.80 7.47 -51.93 -0.39 0.42 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.86 7.46 -51.93 -0.39 0.48 16 35 H 0.06 0.75 6.97 -51.93 -0.36 0.38 16 36 H 0.06 0.68 5.19 -51.93 -0.27 0.41 16 37 H 0.06 0.51 6.85 -51.93 -0.36 0.16 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 43 H 0.06 0.59 6.67 -51.93 -0.35 0.25 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 47 H 0.06 0.66 5.88 -51.93 -0.31 0.36 16 48 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 49 H 0.05 0.69 6.63 -51.93 -0.34 0.35 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -27.69 346.29 -9.15 -36.85 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -9.11 Total: 4.72 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -0.26 Total: -22.90 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.03 Total: -40.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.69 -9.15 -36.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.161 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds