Wall clock time and date at job start Mon Mar 30 2020 19:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47476 * 2 1 4 4 C 1.50703 * 109.47543 * 240.00120 * 2 1 3 5 5 H 1.07997 * 120.00321 * 242.76831 * 4 2 1 6 6 C 1.37876 * 119.99737 * 62.75761 * 4 2 1 7 7 N 1.31516 * 119.99996 * 196.66459 * 6 4 2 8 8 Si 1.86802 * 120.00415 * 16.66131 * 6 4 2 9 9 H 1.48504 * 109.46794 * 94.34063 * 8 6 4 10 10 H 1.48496 * 109.47325 * 214.34396 * 8 6 4 11 11 H 1.48499 * 109.47003 * 334.34766 * 8 6 4 12 12 N 1.46901 * 109.47235 * 120.00167 * 2 1 3 13 13 C 1.46905 * 110.99860 * 276.10246 * 12 2 1 14 14 H 1.09001 * 108.85332 * 347.40115 * 13 12 2 15 15 C 1.50477 * 108.87353 * 105.95847 * 13 12 2 16 16 C 1.54237 * 108.52033 * 214.92688 * 15 13 12 17 17 C 1.45542 * 112.40646 * 280.01409 * 16 15 13 18 18 C 1.54235 * 112.40545 * 61.94092 * 17 16 15 19 19 H 1.09003 * 109.63196 * 39.91411 * 18 17 16 20 20 C 1.53001 * 109.63233 * 160.30048 * 18 17 16 21 21 C 1.53007 * 109.46751 * 59.99474 * 20 18 17 22 22 C 1.53003 * 109.47050 * 300.00255 * 20 18 17 23 23 C 1.52997 * 109.47458 * 179.97438 * 20 18 17 24 24 C 1.50474 * 108.51756 * 280.00855 * 18 17 16 25 25 C 1.54061 * 108.87571 * 228.93483 * 13 12 2 26 26 H 1.09002 * 109.47356 * 296.06117 * 1 2 3 27 27 H 1.09000 * 109.46966 * 56.06737 * 1 2 3 28 28 H 1.08997 * 109.46804 * 176.06058 * 1 2 3 29 29 H 0.97004 * 120.00165 * 180.02562 * 7 6 4 30 30 H 1.00904 * 110.99874 * 152.15125 * 12 2 1 31 31 H 1.08998 * 109.62411 * 95.21530 * 15 13 12 32 32 H 1.08998 * 109.62525 * 334.63793 * 15 13 12 33 33 H 1.08998 * 108.89501 * 159.25853 * 16 15 13 34 34 H 1.09007 * 108.90023 * 40.77337 * 16 15 13 35 35 H 1.08998 * 108.89472 * 301.18231 * 17 16 15 36 36 H 1.09004 * 108.89522 * 182.69330 * 17 16 15 37 37 H 1.08997 * 109.47449 * 300.00319 * 21 20 18 38 38 H 1.08999 * 109.46937 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47014 * 60.00313 * 21 20 18 40 40 H 1.08999 * 109.47226 * 179.97438 * 22 20 18 41 41 H 1.08999 * 109.46759 * 299.99481 * 22 20 18 42 42 H 1.08997 * 109.47371 * 59.99545 * 22 20 18 43 43 H 1.08998 * 109.46969 * 300.00092 * 23 20 18 44 44 H 1.08999 * 109.47217 * 59.99989 * 23 20 18 45 45 H 1.09005 * 109.46788 * 180.02562 * 23 20 18 46 46 H 1.09004 * 108.87962 * 214.92983 * 24 18 17 47 47 H 1.08993 * 108.88049 * 333.37476 * 24 18 17 48 48 H 1.08994 * 108.81552 * 318.36602 * 25 13 12 49 49 H 1.08998 * 108.81753 * 76.65140 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6159 -1.6138 -1.1321 6 6 1.7469 -0.2070 -2.4819 7 7 1.8874 -0.9687 -3.5448 8 14 1.1604 1.5568 -2.6678 9 1 2.3219 2.4372 -2.9525 10 1 0.1896 1.6401 -3.7885 11 1 0.5035 1.9951 -1.4102 12 7 2.0196 -0.6925 1.1994 13 6 2.0577 0.2160 2.3532 14 1 1.9283 1.2391 2.0003 15 6 0.9228 -0.1265 3.2801 16 6 0.4000 1.1772 3.9171 17 6 1.2304 1.6251 5.0253 18 6 2.6726 1.9498 4.5854 19 1 2.6558 2.4565 3.6204 20 6 3.3372 2.8515 5.6277 21 6 3.3675 2.1331 6.9783 22 6 2.5413 4.1515 5.7593 23 6 4.7675 3.1708 5.1882 24 6 3.4391 0.6600 4.4704 25 6 3.4334 0.0967 3.0364 26 1 -0.3634 0.4515 0.9232 27 1 -0.3633 0.5737 -0.8527 28 1 -0.3633 -1.0252 -0.0706 29 1 1.6869 -0.6145 -4.4253 30 1 2.9255 -1.1053 1.0341 31 1 1.2781 -0.7988 4.0610 32 1 0.1220 -0.6057 2.7168 33 1 -0.6140 1.0106 4.2807 34 1 0.3762 1.9573 3.1560 35 1 1.2602 0.8420 5.7829 36 1 0.7847 2.5190 5.4616 37 1 2.3487 1.9053 7.2916 38 1 3.8405 2.7756 7.7210 39 1 3.9344 1.2070 6.8846 40 1 3.0145 4.7937 6.5021 41 1 2.5197 4.6632 4.7971 42 1 1.5225 3.9237 6.0726 43 1 5.3342 2.2444 5.0948 44 1 4.7463 3.6823 4.2259 45 1 5.2410 3.8127 5.9311 46 1 4.4706 0.8342 4.7768 47 1 2.9939 -0.0757 5.1401 48 1 3.7189 -0.9546 3.0706 49 1 4.1690 0.6393 2.4427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:57 Heat of formation + Delta-G solvation = -27.969220 kcal Electronic energy + Delta-G solvation = -22278.722702 eV Core-core repulsion = 19432.472375 eV Total energy + Delta-G solvation = -2846.250327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.02648 -37.09614 -34.70310 -32.70895 -31.82758 -30.20782 -28.03548 -27.42365 -27.12784 -25.13043 -24.50219 -23.10690 -20.78982 -19.83495 -19.51147 -18.08731 -16.64026 -15.91804 -15.29731 -14.77085 -14.42548 -14.29856 -14.03534 -13.95263 -13.53445 -13.37362 -12.92799 -12.73065 -12.43695 -12.18269 -12.07978 -12.05902 -11.85817 -11.75760 -11.54063 -11.22001 -11.10503 -10.98253 -10.87612 -10.73538 -10.48615 -10.34760 -10.23201 -10.08410 -9.89750 -9.84392 -9.80490 -9.34214 -9.04918 -8.39069 -7.39415 -6.10414 -4.03684 3.27920 3.37651 3.40591 4.42840 4.56213 4.61465 4.70008 4.89028 5.01123 5.15969 5.22716 5.26111 5.43275 5.43983 5.47592 5.52176 5.55329 5.57093 5.66068 5.70226 5.73229 5.79623 5.85067 5.92414 5.99809 6.05824 6.08074 6.14216 6.22441 6.24506 6.31162 6.38495 6.41547 6.48071 6.52686 6.55149 6.64865 6.69929 6.76697 6.80570 6.89374 7.07358 7.49457 7.73242 8.06224 8.44989 8.69700 9.00064 9.56953 11.02882 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.004717 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.349106 B = 5934.360527 C = 6046.243521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.189 3.811 3 H -0.007 1.007 4 C -0.525 4.525 5 H 0.076 0.924 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.863 3.137 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.253 1.253 12 N -0.678 5.678 13 C 0.088 3.912 14 H 0.044 0.956 15 C -0.102 4.102 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.074 4.074 19 H 0.072 0.928 20 C -0.064 4.064 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.111 4.111 25 C -0.127 4.127 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.336 0.664 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 8.104 20.344 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 H 0.011 0.989 4 C -0.563 4.563 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.690 3.310 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.177 1.177 12 N -0.309 5.309 13 C -0.023 4.023 14 H 0.062 0.938 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.092 4.092 19 H 0.090 0.910 20 C -0.064 4.064 21 C -0.199 4.199 22 C -0.201 4.201 23 C -0.202 4.202 24 C -0.149 4.149 25 C -0.165 4.165 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.155 7.824 20.281 21.769 hybrid contribution 0.471 1.495 -0.639 1.693 sum 1.626 9.319 19.642 21.801 Atomic orbital electron populations 1.22124 0.98402 1.00674 0.97965 1.19517 0.92121 0.92028 0.88372 0.98929 1.21084 1.34840 1.11573 0.88809 0.90631 1.24870 0.94622 0.97223 0.95824 1.70001 1.48847 1.35213 0.98767 0.87217 0.78808 0.86612 0.78364 1.20927 1.21300 1.17699 1.60772 1.31998 1.33387 1.04784 1.21425 0.93129 0.95499 0.92201 0.93787 1.21453 0.98595 0.95969 0.98020 1.20499 0.98729 0.98477 0.98188 1.20636 0.95109 1.00715 0.98394 1.20943 0.94485 0.95576 0.98237 0.90978 1.20568 0.95231 0.95148 0.95425 1.21917 1.01799 1.00179 0.96010 1.21951 1.00072 0.96596 1.01494 1.21957 0.95792 1.01437 1.01010 1.21456 1.00119 0.96480 0.96820 1.22316 0.97576 1.01008 0.95622 0.95757 0.94101 0.92948 0.92730 0.84538 0.92512 0.90709 0.92823 0.92541 0.92450 0.92327 0.92530 0.93320 0.92501 0.93123 0.92758 0.92246 0.92162 0.92695 0.93083 0.91982 0.92293 0.91797 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.55 37.16 0.32 -2.74 16 2 C 0.19 4.52 2.06 -68.86 -0.14 4.37 16 3 H -0.01 -0.17 6.10 -51.93 -0.32 -0.48 16 4 C -0.53 -14.80 9.02 -34.44 -0.31 -15.11 16 5 H 0.08 2.30 7.91 -52.49 -0.41 1.89 16 6 C 0.08 2.23 5.34 -17.82 -0.10 2.14 16 7 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 8 Si 0.86 21.46 25.87 -169.99 -4.40 17.06 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.25 -5.98 5.34 56.52 0.30 -5.67 16 12 N -0.68 -13.93 6.05 -101.69 -0.62 -14.55 16 13 C 0.09 1.47 1.91 -68.42 -0.13 1.34 16 14 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 15 C -0.10 -1.54 4.93 -27.34 -0.13 -1.67 16 16 C -0.12 -1.56 5.26 -29.60 -0.16 -1.72 16 17 C -0.11 -1.22 3.68 -29.60 -0.11 -1.33 16 18 C -0.07 -0.82 1.22 -91.23 -0.11 -0.93 16 19 H 0.07 0.94 6.99 -51.93 -0.36 0.58 16 20 C -0.06 -0.60 0.55 -154.50 -0.09 -0.69 16 21 C -0.14 -1.22 7.91 37.16 0.29 -0.93 16 22 C -0.14 -1.30 8.19 37.16 0.30 -1.00 16 23 C -0.14 -1.36 8.22 37.16 0.31 -1.05 16 24 C -0.11 -1.28 3.60 -27.43 -0.10 -1.38 16 25 C -0.13 -1.80 5.05 -25.62 -0.13 -1.93 16 26 H 0.02 0.49 6.81 -51.93 -0.35 0.13 16 27 H 0.04 0.95 4.70 -51.93 -0.24 0.71 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.34 6.94 7.48 -39.29 -0.29 6.65 16 31 H 0.06 0.80 6.98 -51.93 -0.36 0.44 16 32 H 0.07 1.28 6.91 -51.93 -0.36 0.92 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 35 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 36 H 0.06 0.59 5.64 -51.93 -0.29 0.30 16 37 H 0.06 0.48 6.90 -51.93 -0.36 0.12 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.49 6.99 -51.93 -0.36 0.13 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.52 6.06 -51.93 -0.31 0.21 16 43 H 0.06 0.56 6.05 -51.93 -0.31 0.25 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.66 5.19 -51.93 -0.27 0.39 16 47 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 48 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -29.02 339.59 -8.43 -37.45 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -9.03 Total: 4.02 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -0.28 Total: -22.62 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.16 Total: -41.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.40 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.02 -8.43 -37.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds