Wall clock time and date at job start Mon Mar 30 2020 19:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47347 * 2 1 4 4 C 1.50700 * 109.46883 * 240.00432 * 2 1 3 5 5 H 1.08005 * 119.99857 * 240.00154 * 4 2 1 6 6 C 1.37880 * 120.00137 * 59.99953 * 4 2 1 7 7 N 1.31511 * 119.99910 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00048 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47079 * 59.99987 * 8 6 4 10 10 H 1.48502 * 109.47256 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47066 * 300.00298 * 8 6 4 12 12 N 1.46899 * 109.47375 * 120.00751 * 2 1 3 13 13 C 1.46904 * 110.99636 * 275.00155 * 12 2 1 14 14 H 1.08998 * 108.85433 * 36.43273 * 13 12 2 15 15 C 1.54072 * 108.79154 * 277.92363 * 13 12 2 16 16 C 1.54268 * 112.94522 * 197.44736 * 15 13 12 17 17 C 1.50474 * 112.38918 * 318.57842 * 16 15 13 18 18 C 1.54241 * 108.68067 * 93.93390 * 17 16 15 19 19 H 1.09005 * 108.89663 * 40.67031 * 18 17 16 20 20 C 1.53003 * 108.89259 * 159.15904 * 18 17 16 21 21 C 1.53002 * 109.47283 * 60.00180 * 20 18 17 22 22 C 1.53002 * 109.47119 * 180.02562 * 20 18 17 23 23 C 1.53001 * 109.47319 * 300.00004 * 20 18 17 24 24 C 1.45532 * 112.40753 * 279.91350 * 18 17 16 25 25 C 1.50471 * 108.87766 * 155.00105 * 13 12 2 26 26 H 1.09002 * 109.46655 * 59.99425 * 1 2 3 27 27 H 1.08994 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46283 * 299.99761 * 1 2 3 29 29 H 0.97002 * 120.00162 * 179.97438 * 7 6 4 30 30 H 1.00897 * 111.00196 * 38.94478 * 12 2 1 31 31 H 1.09001 * 108.81672 * 318.41945 * 15 13 12 32 32 H 1.09002 * 108.81404 * 76.81377 * 15 13 12 33 33 H 1.08996 * 109.18360 * 197.65706 * 16 15 13 34 34 H 1.08995 * 108.68331 * 79.15464 * 16 15 13 35 35 H 1.09002 * 109.62953 * 334.12706 * 17 16 15 36 36 H 1.09005 * 109.62746 * 213.74130 * 17 16 15 37 37 H 1.08996 * 109.46802 * 59.99438 * 21 20 18 38 38 H 1.08997 * 109.47046 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46695 * 300.00078 * 21 20 18 40 40 H 1.09008 * 109.47098 * 59.99729 * 22 20 18 41 41 H 1.08997 * 109.47093 * 179.97438 * 22 20 18 42 42 H 1.08996 * 109.46938 * 300.00545 * 22 20 18 43 43 H 1.09001 * 109.47030 * 59.99695 * 23 20 18 44 44 H 1.08997 * 109.47581 * 180.02562 * 23 20 18 45 45 H 1.09008 * 109.46844 * 300.00238 * 23 20 18 46 46 H 1.09002 * 108.89819 * 182.69300 * 24 18 17 47 47 H 1.09005 * 108.90043 * 301.27801 * 24 18 17 48 48 H 1.08992 * 109.63290 * 95.11304 * 25 13 12 49 49 H 1.09000 * 109.62649 * 334.53200 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8268 -0.4196 -5.2205 11 1 3.8074 -1.1187 -4.0078 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2224 2.3469 14 1 1.2395 0.9113 2.2946 15 6 3.3921 1.0301 2.2665 16 6 3.7713 1.6956 3.6056 17 6 2.5805 2.2897 4.3079 18 6 2.0260 1.2513 5.3046 19 1 2.8614 0.7534 5.7969 20 6 1.1917 1.9764 6.3625 21 6 0.0340 2.7112 5.6836 22 6 0.6352 0.9578 7.3593 23 6 2.0719 2.9853 7.1029 24 6 1.1954 0.2479 4.6556 25 6 1.9779 -0.5799 3.6155 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 0.7095 1.1621 -3.4843 30 1 1.4497 -1.4980 1.4099 31 1 4.1990 0.3625 1.9644 32 1 3.2793 1.8085 1.5118 33 1 4.5007 2.4840 3.4199 34 1 4.2240 0.9446 4.2529 35 1 1.8124 2.5420 3.5768 36 1 2.8833 3.1882 4.8457 37 1 -0.5930 1.9924 5.1561 38 1 -0.5600 3.2281 6.4372 39 1 0.4309 3.4369 4.9737 40 1 1.4602 0.4346 7.8430 41 1 0.0412 1.4743 8.1132 42 1 0.0083 0.2387 6.8321 43 1 2.4688 3.7110 6.3930 44 1 1.4777 3.5015 7.8569 45 1 2.8966 2.4617 7.5866 46 1 0.7967 -0.4250 5.4147 47 1 0.3651 0.7466 4.1554 48 1 2.9762 -0.7959 3.9957 49 1 1.4491 -1.5121 3.4166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:00 Heat of formation + Delta-G solvation = -32.410470 kcal Electronic energy + Delta-G solvation = -22169.421593 eV Core-core repulsion = 19322.978679 eV Total energy + Delta-G solvation = -2846.442914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08169 -36.99808 -34.54664 -32.46911 -31.75547 -29.89767 -27.75293 -27.37720 -26.68593 -25.07588 -24.48075 -23.02159 -21.10001 -20.04631 -18.60839 -18.36378 -16.29176 -15.77580 -15.01178 -14.82315 -14.55322 -14.31272 -13.80867 -13.74572 -13.48746 -13.27490 -12.89210 -12.41536 -12.25524 -12.03174 -11.95007 -11.82866 -11.60337 -11.51631 -11.38558 -11.16738 -10.95195 -10.90694 -10.84660 -10.72635 -10.34781 -10.21853 -10.14641 -10.10930 -9.95398 -9.82468 -9.70861 -9.49987 -8.89042 -8.29694 -7.09192 -5.92457 -3.95261 3.37663 3.41286 3.44948 4.48407 4.57750 4.66860 4.76942 4.99593 5.12222 5.23758 5.36794 5.38897 5.48966 5.51943 5.55059 5.59970 5.63511 5.66396 5.69672 5.74673 5.81794 5.89234 5.91321 5.99200 6.06114 6.07880 6.19144 6.21771 6.34627 6.34932 6.39518 6.42091 6.49462 6.55095 6.67140 6.70031 6.77311 6.88787 6.91001 6.96947 7.20508 7.50598 7.80824 7.96816 8.37506 8.65855 8.73986 9.12155 9.69882 11.14479 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035091 B = 0.004124 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.733928 B = 6787.471529 C = 6905.680425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.093 3.907 14 H 0.031 0.969 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.069 4.069 19 H 0.064 0.936 20 C -0.068 4.068 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.119 4.119 25 C -0.114 4.114 26 H 0.087 0.913 27 H 0.026 0.974 28 H 0.003 0.997 29 H 0.259 0.741 30 H 0.323 0.677 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 2.969 18.752 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.017 4.017 14 H 0.049 0.951 15 C -0.141 4.141 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.087 4.087 19 H 0.082 0.918 20 C -0.068 4.068 21 C -0.202 4.202 22 C -0.201 4.201 23 C -0.200 4.200 24 C -0.157 4.157 25 C -0.152 4.152 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.055 3.167 18.429 18.729 hybrid contribution -0.727 -0.294 -0.753 1.087 sum 0.328 2.873 17.676 17.911 Atomic orbital electron populations 1.22422 1.00996 0.98992 1.00283 1.19168 0.89315 0.94410 0.86713 0.94891 1.21161 1.29990 1.12311 0.89758 0.92133 1.24946 0.95417 0.95227 0.98963 1.69877 1.37475 1.23232 1.23287 0.86601 0.79172 0.79612 0.82207 1.20440 1.21521 1.20343 1.60876 1.58084 1.08879 1.03751 1.21158 0.96246 0.93995 0.90319 0.95125 1.21913 0.97999 0.98761 0.95475 1.21360 0.97400 0.99307 0.97251 1.21529 0.98316 0.97639 0.97852 1.20074 0.97688 0.95719 0.95212 0.91799 1.20637 0.95559 0.95421 0.95178 1.21956 0.97682 1.00330 1.00239 1.21964 1.00750 0.98867 0.98562 1.21956 0.99289 0.98922 0.99835 1.20693 0.98987 0.97587 0.98389 1.21545 1.00316 0.97957 0.95339 0.89441 0.95528 0.97755 0.93134 0.85913 0.91537 0.92718 0.92896 0.92690 0.91544 0.91931 0.92326 0.93302 0.92310 0.92900 0.93140 0.92170 0.92117 0.93191 0.92922 0.92231 0.91934 0.91747 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 2 C 0.21 5.39 2.36 -68.86 -0.16 5.22 16 3 H 0.03 0.93 7.09 -51.93 -0.37 0.56 16 4 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.09 11.32 55.43 0.63 -25.46 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.69 -14.66 6.00 -101.69 -0.61 -15.27 16 13 C 0.09 1.65 1.86 -68.41 -0.13 1.53 16 14 H 0.03 0.59 5.55 -51.93 -0.29 0.31 16 15 C -0.10 -1.78 5.14 -25.51 -0.13 -1.91 16 16 C -0.12 -1.55 5.34 -27.33 -0.15 -1.70 16 17 C -0.12 -1.42 3.86 -27.34 -0.11 -1.53 16 18 C -0.07 -0.77 1.11 -93.49 -0.10 -0.87 16 19 H 0.06 0.72 7.48 -51.93 -0.39 0.33 16 20 C -0.07 -0.66 0.56 -154.50 -0.09 -0.75 16 21 C -0.14 -1.49 7.84 37.16 0.29 -1.19 16 22 C -0.14 -1.31 7.98 37.16 0.30 -1.01 16 23 C -0.14 -1.28 8.19 37.16 0.30 -0.97 16 24 C -0.12 -1.47 3.98 -29.60 -0.12 -1.59 16 25 C -0.11 -1.65 5.27 -27.34 -0.14 -1.79 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.00 0.08 7.38 -51.93 -0.38 -0.31 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.32 6.63 7.56 -39.29 -0.30 6.33 16 31 H 0.07 1.23 8.12 -51.93 -0.42 0.80 16 32 H 0.05 1.05 7.54 -51.93 -0.39 0.66 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.70 6.65 -51.93 -0.35 0.35 16 35 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 36 H 0.06 0.69 5.61 -51.93 -0.29 0.40 16 37 H 0.06 0.64 6.49 -51.93 -0.34 0.30 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.56 6.27 -51.93 -0.33 0.23 16 43 H 0.06 0.55 6.01 -51.93 -0.31 0.24 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.06 0.67 5.92 -51.93 -0.31 0.36 16 47 H 0.06 0.84 5.68 -51.93 -0.30 0.55 16 48 H 0.06 0.91 6.99 -51.93 -0.36 0.55 16 49 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -28.10 344.91 -9.11 -37.21 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -9.01 Total: 4.59 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -0.30 Total: -23.07 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.02 Total: -40.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.10 -9.11 -37.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.800 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds