Wall clock time and date at job start Mon Mar 30 2020 19:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47289 * 2 1 4 4 C 1.50699 * 109.46912 * 239.99902 * 2 1 3 5 5 H 1.08000 * 120.00680 * 240.00023 * 4 2 1 6 6 C 1.37884 * 119.99641 * 60.00260 * 4 2 1 7 7 N 1.31510 * 120.00306 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99552 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47303 * 90.00378 * 8 6 4 10 10 H 1.48505 * 109.46924 * 210.00123 * 8 6 4 11 11 H 1.48493 * 109.47326 * 329.99960 * 8 6 4 12 12 N 1.46904 * 109.46838 * 120.00295 * 2 1 3 13 13 C 1.46904 * 110.99469 * 205.88512 * 12 2 1 14 14 H 1.08995 * 108.85495 * 326.57808 * 13 12 2 15 15 C 1.54069 * 108.87394 * 85.04337 * 13 12 2 16 16 C 1.54064 * 112.81378 * 162.49211 * 15 13 12 17 17 C 1.50469 * 112.49731 * 41.71534 * 16 15 13 18 18 C 1.54239 * 108.51369 * 265.84128 * 17 16 15 19 19 H 1.08996 * 108.89506 * 319.24299 * 18 17 16 20 20 C 1.53001 * 108.89369 * 200.75497 * 18 17 16 21 21 C 1.52998 * 109.47186 * 60.00062 * 20 18 17 22 22 C 1.52997 * 109.47273 * 180.02562 * 20 18 17 23 23 C 1.53001 * 109.47382 * 300.00424 * 20 18 17 24 24 C 1.45542 * 112.40803 * 80.00346 * 18 17 16 25 25 C 1.50477 * 108.87126 * 208.01856 * 13 12 2 26 26 H 1.09002 * 109.47314 * 59.39498 * 1 2 3 27 27 H 1.09002 * 109.47203 * 179.39721 * 1 2 3 28 28 H 1.08997 * 109.46835 * 299.39275 * 1 2 3 29 29 H 0.96999 * 119.99923 * 180.02562 * 7 6 4 30 30 H 1.00900 * 111.00014 * 81.93795 * 12 2 1 31 31 H 1.08997 * 108.81061 * 41.63239 * 15 13 12 32 32 H 1.08995 * 108.81277 * 283.35302 * 15 13 12 33 33 H 1.09001 * 108.87910 * 280.93312 * 16 15 13 34 34 H 1.09001 * 108.87545 * 162.49288 * 16 15 13 35 35 H 1.09004 * 109.63365 * 25.55292 * 17 16 15 36 36 H 1.09008 * 109.62959 * 145.94123 * 17 16 15 37 37 H 1.09005 * 109.46910 * 60.00015 * 21 20 18 38 38 H 1.09001 * 109.47203 * 179.97438 * 21 20 18 39 39 H 1.09002 * 109.47444 * 299.99742 * 21 20 18 40 40 H 1.09001 * 109.47465 * 59.99544 * 22 20 18 41 41 H 1.09001 * 109.47454 * 180.02562 * 22 20 18 42 42 H 1.09005 * 109.46943 * 300.00059 * 22 20 18 43 43 H 1.08996 * 109.47258 * 59.99293 * 23 20 18 44 44 H 1.08999 * 109.47616 * 180.02562 * 23 20 18 45 45 H 1.09010 * 109.46595 * 299.99953 * 23 20 18 46 46 H 1.08991 * 108.89887 * 58.81310 * 24 18 17 47 47 H 1.09002 * 108.89146 * 177.40493 * 24 18 17 48 48 H 1.08993 * 109.62918 * 25.36797 * 25 13 12 49 49 H 1.09001 * 109.78638 * 264.88208 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 3.3584 -0.2166 1.5725 14 1 3.9070 0.0381 0.6657 15 6 3.2139 1.0501 2.4375 16 6 4.4936 1.3826 3.2284 17 6 5.7419 1.1919 2.4103 18 6 6.2897 -0.2254 2.6757 19 1 6.1947 -0.4471 3.7387 20 6 7.7710 -0.2634 2.2949 21 6 8.5408 0.7550 3.1383 22 6 8.3281 -1.6648 2.5526 23 6 7.9255 0.0816 0.8123 24 6 5.5815 -1.2451 1.9163 25 6 4.0864 -1.3224 2.2877 26 1 -0.3634 0.5232 -0.8845 27 1 -0.3634 -1.0276 -0.0108 28 1 -0.3633 0.5044 0.8954 29 1 0.7090 1.1615 -3.4844 30 1 2.0156 -1.6928 1.0664 31 1 2.3941 0.9038 3.1407 32 1 2.9723 1.8926 1.7896 33 1 4.5442 0.7367 4.1050 34 1 4.4440 2.4199 3.5595 35 1 5.5063 1.3010 1.3516 36 1 6.4857 1.9349 2.6984 37 1 8.4307 0.5092 4.1945 38 1 9.5962 0.7276 2.8673 39 1 8.1439 1.7534 2.9542 40 1 7.7797 -2.3901 1.9515 41 1 9.3836 -1.6918 2.2817 42 1 8.2181 -1.9110 3.6088 43 1 7.5285 1.0799 0.6283 44 1 8.9808 0.0541 0.5408 45 1 7.3771 -0.6439 0.2114 46 1 5.6701 -1.0191 0.8537 47 1 6.0425 -2.2136 2.1104 48 1 3.6819 -2.2863 1.9793 49 1 3.9702 -1.2042 3.3650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:03 Heat of formation + Delta-G solvation = -35.134646 kcal Electronic energy + Delta-G solvation = -22362.389479 eV Core-core repulsion = 19515.828436 eV Total energy + Delta-G solvation = -2846.561043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99316 -36.87699 -34.51088 -32.40629 -31.69324 -29.91745 -27.74279 -27.28346 -26.72312 -25.00879 -24.41974 -22.89959 -21.04146 -19.80577 -18.57145 -18.29325 -16.50949 -15.76870 -14.93011 -14.76424 -14.53658 -14.24128 -13.73991 -13.68537 -13.40886 -13.25791 -12.82715 -12.32504 -12.26323 -12.02005 -11.88640 -11.71832 -11.58624 -11.28137 -11.23762 -11.14634 -11.01403 -10.86310 -10.83976 -10.58416 -10.40694 -10.16370 -10.09653 -9.96520 -9.83886 -9.74132 -9.70294 -9.39908 -8.99408 -8.36548 -7.15165 -5.96174 -4.08169 3.27989 3.35084 3.37530 4.41872 4.65720 4.74531 4.85153 5.07466 5.18681 5.28957 5.32466 5.44526 5.56196 5.59239 5.61625 5.67814 5.70707 5.74879 5.77578 5.81623 5.89565 5.97470 5.99488 6.07155 6.13946 6.16370 6.28710 6.31557 6.40780 6.41645 6.51477 6.51728 6.55791 6.63394 6.75965 6.78066 6.94482 6.97536 7.05678 7.21158 7.39247 7.60350 7.79428 8.14610 8.24549 8.41162 8.75930 9.06142 9.59337 11.04745 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.005578 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.796671 B = 5018.779688 C = 5778.670839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.208 3.792 3 H 0.031 0.969 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.693 5.693 13 C 0.095 3.905 14 H 0.046 0.954 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.067 4.067 19 H 0.062 0.938 20 C -0.068 4.068 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.120 4.120 25 C -0.112 4.112 26 H 0.079 0.921 27 H 0.022 0.978 28 H 0.011 0.989 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.742 -1.116 10.984 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.049 0.951 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.324 5.324 13 C -0.015 4.015 14 H 0.064 0.936 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.085 4.085 19 H 0.080 0.920 20 C -0.068 4.068 21 C -0.199 4.199 22 C -0.201 4.201 23 C -0.203 4.203 24 C -0.158 4.158 25 C -0.150 4.150 26 H 0.098 0.902 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.324 -0.563 11.274 16.712 hybrid contribution 0.812 -0.881 -1.728 2.103 sum 13.136 -1.443 9.546 16.302 Atomic orbital electron populations 1.21687 0.98131 0.98888 0.99617 1.19149 0.92142 0.94058 0.84628 0.95109 1.21854 1.31531 1.12588 0.91945 0.92987 1.24928 0.94932 0.94853 0.98852 1.69888 1.36587 1.22760 1.23316 0.86691 0.79235 0.79538 0.83095 1.20676 1.21232 1.20089 1.60989 1.22655 1.09156 1.39560 1.21093 0.90437 0.93342 0.96611 0.93640 1.21889 0.96152 0.97682 0.98422 1.21307 0.94990 1.00274 0.98592 1.21534 0.96705 0.95896 1.01308 1.20059 0.93090 0.95584 0.99763 0.91975 1.20633 0.95345 0.95109 0.95695 1.21952 0.99358 0.99264 0.99374 1.21963 1.00298 0.96525 1.01343 1.21963 1.00904 1.02166 0.95229 1.20696 0.95484 0.98529 1.01085 1.21544 0.94406 0.98620 1.00453 0.90240 0.95840 0.96969 0.92986 0.85621 0.92080 0.92883 0.92717 0.93087 0.91269 0.91986 0.92993 0.93234 0.92142 0.92118 0.93189 0.92976 0.92279 0.93387 0.92162 0.91534 0.92379 0.92151 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.29 37.16 0.35 -2.79 16 2 C 0.21 5.28 2.37 -68.86 -0.16 5.11 16 3 H 0.03 0.86 7.29 -51.93 -0.38 0.48 16 4 C -0.54 -14.71 8.30 -34.44 -0.29 -14.99 16 5 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.45 11.33 55.43 0.63 -24.82 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.69 -14.82 6.03 -101.69 -0.61 -15.43 16 13 C 0.10 1.77 1.83 -68.41 -0.13 1.64 16 14 H 0.05 0.97 6.09 -51.93 -0.32 0.66 16 15 C -0.10 -1.76 5.23 -25.62 -0.13 -1.89 16 16 C -0.11 -1.55 5.31 -27.44 -0.15 -1.69 16 17 C -0.12 -1.52 3.86 -27.35 -0.11 -1.63 16 18 C -0.07 -0.80 1.10 -93.49 -0.10 -0.90 16 19 H 0.06 0.74 7.47 -51.93 -0.39 0.35 16 20 C -0.07 -0.73 0.56 -154.51 -0.09 -0.82 16 21 C -0.14 -1.37 8.19 37.16 0.30 -1.07 16 22 C -0.14 -1.44 7.98 37.16 0.30 -1.15 16 23 C -0.15 -1.69 7.84 37.16 0.29 -1.39 16 24 C -0.12 -1.64 3.98 -29.60 -0.12 -1.76 16 25 C -0.11 -1.73 5.26 -27.34 -0.14 -1.87 16 26 H 0.08 2.17 6.09 -51.93 -0.32 1.85 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 6.91 7.43 -39.29 -0.29 6.62 16 31 H 0.06 1.07 8.12 -51.93 -0.42 0.64 16 32 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 33 H 0.05 0.70 6.64 -51.93 -0.34 0.36 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.04 6.46 -51.93 -0.34 0.71 16 36 H 0.06 0.72 5.63 -51.92 -0.29 0.43 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.59 6.02 -51.93 -0.31 0.27 16 40 H 0.06 0.63 6.27 -51.93 -0.33 0.31 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.71 6.89 -51.93 -0.36 0.35 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.76 6.49 -51.92 -0.34 0.42 16 46 H 0.07 1.03 5.68 -51.93 -0.30 0.73 16 47 H 0.06 0.73 5.92 -51.93 -0.31 0.42 16 48 H 0.06 0.95 7.26 -51.93 -0.38 0.57 16 49 H 0.06 0.88 7.00 -51.93 -0.36 0.51 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -27.43 346.25 -9.14 -36.57 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -9.08 Total: 5.60 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.27 Total: -23.46 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.01 Total: -40.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.43 -9.14 -36.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.436 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds