Wall clock time and date at job start Mon Mar 30 2020 19:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35749 * 117.00020 * 2 1 4 4 C 1.39441 * 120.80913 * 0.02562 * 3 2 1 5 5 C 1.37854 * 119.23725 * 179.97438 * 4 3 2 6 6 N 1.32014 * 120.90590 * 0.02562 * 5 4 3 7 7 C 1.32442 * 121.77561 * 359.68833 * 6 5 4 8 8 N 1.39423 * 119.66519 * 180.30914 * 7 6 5 9 9 C 1.34778 * 120.00302 * 355.19307 * 8 7 6 10 10 O 1.21278 * 119.99917 * 5.08747 * 9 8 7 11 11 C 1.50703 * 120.00164 * 185.07962 * 9 8 7 12 12 S 1.81001 * 109.47062 * 180.02562 * 11 9 8 13 13 C 1.76207 * 99.99778 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99907 * 0.02562 * 13 12 11 15 15 C 1.38794 * 119.99892 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00043 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99905 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47318 * 89.99731 * 17 15 13 19 19 H 1.48500 * 109.46989 * 209.99806 * 17 15 13 20 20 H 1.48500 * 109.47195 * 329.99557 * 17 15 13 21 21 C 1.38801 * 120.66395 * 0.58011 * 7 6 5 22 22 H 1.09005 * 109.47162 * 300.00095 * 1 2 3 23 23 H 1.08996 * 109.46999 * 60.00143 * 1 2 3 24 24 H 1.09003 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.38284 * 359.95800 * 4 3 2 26 26 H 1.08007 * 119.54224 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99880 * 175.19722 * 8 7 6 28 28 H 1.08994 * 109.47114 * 300.00534 * 11 9 8 29 29 H 1.09007 * 109.46434 * 60.00209 * 11 9 8 30 30 H 0.96998 * 119.99768 * 180.02562 * 16 15 13 31 31 H 1.07996 * 120.48012 * 179.73354 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3024 2.3896 0.0005 5 6 1.9618 3.6002 0.0011 6 7 3.2808 3.6540 0.0005 7 6 4.0235 2.5574 0.0056 8 7 5.4135 2.6655 0.0114 9 6 5.9957 3.8771 -0.0860 10 8 5.3132 4.8796 -0.0858 11 6 7.4948 3.9862 -0.1952 12 16 7.9661 5.7301 -0.3092 13 6 9.7169 5.5670 -0.4239 14 1 10.1699 4.5866 -0.4104 15 6 10.5137 6.6983 -0.5317 16 7 9.9614 7.8930 -0.5487 17 14 12.3696 6.5253 -0.6540 18 1 12.7635 6.4155 -2.0815 19 1 13.0186 7.7175 -0.0517 20 1 12.8021 5.3055 0.0742 21 6 3.4320 1.3018 -0.0003 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2230 2.3555 0.0003 26 1 1.3912 4.5173 0.0011 27 1 5.9616 1.8686 0.0855 28 1 7.9566 3.5423 0.6867 29 1 7.8334 3.4588 -1.0871 30 1 10.5183 8.6836 -0.6243 31 1 4.0405 0.4096 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611190708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:09 Heat of formation + Delta-G solvation = -21.120126 kcal Electronic energy + Delta-G solvation = -16961.278681 eV Core-core repulsion = 13949.319935 eV Total energy + Delta-G solvation = -3011.958746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92524 -39.44766 -37.94872 -34.61786 -32.43493 -31.63966 -30.72038 -28.83296 -27.62123 -25.49940 -23.75977 -22.92884 -20.49814 -18.77825 -17.93315 -16.99179 -16.61378 -16.16691 -16.06174 -15.44723 -15.23764 -14.80784 -14.49346 -14.12006 -13.80767 -13.73583 -13.28035 -12.83268 -12.57269 -12.22307 -11.78012 -11.57769 -11.06603 -11.03184 -10.77846 -10.57591 -9.91737 -9.83645 -9.07086 -9.05072 -8.90736 -8.33592 -8.25783 -6.51448 -6.22156 -3.93241 1.03311 1.31530 2.58509 3.03635 3.03856 3.22647 3.26593 3.30694 3.56091 3.90091 4.19162 4.45296 4.56098 4.76704 4.78275 4.86360 5.00330 5.08791 5.13115 5.16638 5.41305 5.56277 5.65672 5.83322 5.93875 6.05521 6.09426 6.66191 6.98553 7.27925 7.59191 8.13683 8.34595 8.55637 9.23094 10.85262 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.067807 B = 0.003263 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.840494 B = 8579.460081 C = 8965.141098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.191 3.809 4 C -0.300 4.300 5 C 0.172 3.828 6 N -0.496 5.496 7 C 0.406 3.594 8 N -0.664 5.664 9 C 0.519 3.481 10 O -0.443 6.443 11 C -0.153 4.153 12 S -0.056 6.056 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.251 4.251 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.137 0.863 26 H 0.161 0.839 27 H 0.416 0.584 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.269 0.731 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.727 -16.354 1.258 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.138 3.862 4 C -0.323 4.323 5 C 0.013 3.987 6 N -0.213 5.213 7 C 0.174 3.826 8 N -0.311 5.311 9 C 0.304 3.696 10 O -0.308 6.308 11 C -0.304 4.304 12 S 0.171 5.829 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.746 3.254 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.276 4.276 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.154 0.846 26 H 0.178 0.822 27 H 0.253 0.747 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.221 -13.826 1.229 22.118 hybrid contribution 1.549 -2.438 -0.055 2.889 sum -15.672 -16.264 1.174 22.617 Atomic orbital electron populations 1.23116 0.77776 1.04123 1.01791 1.86034 1.21879 1.26505 1.87973 1.18877 0.91591 0.84419 0.91363 1.22079 1.01299 0.93191 1.15750 1.22511 0.89209 0.97022 0.89936 1.67837 1.06509 1.29380 1.17621 1.18226 0.85220 0.88442 0.90680 1.43883 1.03218 1.11336 1.72686 1.20634 0.90333 0.82364 0.76290 1.90816 1.64086 1.34461 1.41473 1.23566 0.92557 1.09024 1.05209 1.85454 1.06123 0.95331 1.96014 1.22861 0.91286 0.95666 1.58626 0.90835 1.24997 0.99615 0.94454 0.94532 1.70017 1.35997 0.97651 1.46564 0.86153 0.82924 0.77892 0.78437 1.20263 1.20750 1.19682 1.20568 0.92633 0.97732 1.16638 0.92301 0.92288 0.88041 0.84569 0.82169 0.74697 0.88871 0.88829 0.92143 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.07 10.51 -18.95 -0.20 -3.27 16 3 C 0.19 2.17 6.73 -38.86 -0.26 1.91 16 4 C -0.30 -3.16 9.11 -39.27 -0.36 -3.51 16 5 C 0.17 2.21 11.17 -17.61 -0.20 2.02 16 6 N -0.50 -8.41 7.88 -12.44 -0.10 -8.50 16 7 C 0.41 6.11 7.42 -154.70 -1.15 4.96 16 8 N -0.66 -9.70 5.39 -11.46 -0.06 -9.76 16 9 C 0.52 9.98 7.81 -10.98 -0.09 9.90 16 10 O -0.44 -10.37 14.12 5.56 0.08 -10.30 16 11 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 12 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 13 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 14 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 17 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.25 -3.05 9.90 -39.10 -0.39 -3.44 16 22 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 23 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 24 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.14 1.00 6.46 -52.49 -0.34 0.66 16 26 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 27 H 0.42 4.29 8.70 -40.82 -0.36 3.93 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -36.37 292.92 -6.54 -42.91 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.15 Total: 0.05 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.02 Total: -2.74 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.57 Total: -43.67 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.12 Total: -13.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.37 -6.54 -42.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611190708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.788 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds