Wall clock time and date at job start Mon Mar 30 2020 19:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46974 * 2 1 4 4 C 1.36879 * 120.00158 * 266.50708 * 3 2 1 5 5 H 1.08006 * 120.00041 * 148.43815 * 4 3 2 6 6 C 1.39037 * 119.99833 * 328.44576 * 4 3 2 7 7 N 1.31374 * 119.99982 * 159.38029 * 6 4 3 8 8 Si 1.86792 * 120.00151 * 339.37652 * 6 4 3 9 9 H 1.48507 * 109.47148 * 95.59841 * 8 6 4 10 10 H 1.48500 * 109.47270 * 215.59905 * 8 6 4 11 11 H 1.48503 * 109.47348 * 335.60043 * 8 6 4 12 12 C 1.34779 * 119.99857 * 86.50726 * 3 2 1 13 13 O 1.21605 * 120.00060 * 4.77215 * 12 3 2 14 14 C 1.47649 * 119.99968 * 184.76818 * 12 3 2 15 15 C 1.40075 * 120.57532 * 321.02992 * 14 12 3 16 16 C 1.38329 * 118.29566 * 180.23768 * 15 14 12 17 17 C 1.50705 * 120.32718 * 179.76696 * 16 15 14 18 18 C 1.38367 * 119.35246 * 359.48676 * 16 15 14 19 19 N 1.31934 * 121.11571 * 0.25483 * 18 16 15 20 20 C 1.31810 * 121.86650 * 359.97438 * 19 18 16 21 21 Cl 1.73600 * 119.74120 * 179.97438 * 20 19 18 22 22 H 1.08994 * 109.47763 * 300.00409 * 1 2 3 23 23 H 1.09006 * 109.46926 * 60.00333 * 1 2 3 24 24 H 1.08996 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47961 * 240.00107 * 2 1 3 26 26 H 1.09000 * 109.47243 * 119.99368 * 2 1 3 27 27 H 0.96995 * 120.00034 * 179.97438 * 7 6 4 28 28 H 1.07995 * 120.85432 * 359.97438 * 15 14 12 29 29 H 1.08995 * 109.46643 * 269.72411 * 17 16 15 30 30 H 1.09005 * 109.46713 * 29.71414 * 17 16 15 31 31 H 1.08997 * 109.47250 * 149.72143 * 17 16 15 32 32 H 1.07999 * 119.44192 * 180.27841 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3145 2.0025 -1.1832 5 1 2.1778 3.0693 -1.2820 6 6 2.7912 1.2601 -2.2578 7 7 2.6960 1.7360 -3.4786 8 14 3.5673 -0.4137 -1.9657 9 1 2.5455 -1.4737 -2.1600 10 1 4.6809 -0.6175 -2.9267 11 1 4.0923 -0.4806 -0.5782 12 6 2.1759 2.0403 1.1651 13 8 1.9963 1.4622 2.2198 14 6 2.5666 3.4642 1.1608 15 6 3.5031 3.9433 0.2359 16 6 3.8384 5.2847 0.2773 17 6 4.8448 5.8478 -0.6930 18 6 3.2365 6.1057 1.2145 19 7 2.3532 5.6295 2.0709 20 6 2.0033 4.3587 2.0754 21 17 0.8356 3.7910 3.2278 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8935 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.0288 1.2182 -4.2283 28 1 3.9550 3.2816 -0.4881 29 1 5.8434 5.7784 -0.2617 30 1 4.8103 5.2797 -1.6227 31 1 4.6085 6.8922 -0.8962 32 1 3.4939 7.1541 1.2451 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:50 Heat of formation + Delta-G solvation = -7.424466 kcal Electronic energy + Delta-G solvation = -18657.834905 eV Core-core repulsion = 15644.426341 eV Total energy + Delta-G solvation = -3013.408564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.69869 -40.15965 -37.67054 -37.03787 -34.56351 -34.18642 -33.46086 -31.37246 -28.05658 -27.15934 -25.60844 -24.64571 -23.14338 -21.00562 -19.34977 -18.26541 -18.16313 -17.81982 -16.96764 -16.26293 -15.91775 -15.32494 -15.18544 -14.86036 -14.55579 -14.23761 -14.13503 -13.94031 -13.77725 -13.48409 -13.17293 -12.82798 -12.75703 -12.60439 -12.43810 -12.17550 -12.02385 -11.60972 -11.14682 -10.97025 -10.71029 -10.34739 -9.89798 -9.69994 -8.54574 -6.10749 -0.32789 0.11791 0.83350 1.17783 1.32765 1.41747 1.83565 2.13562 2.38681 2.63297 2.98039 3.53403 3.79942 3.82949 3.96318 3.98875 4.14270 4.32111 4.38136 4.43473 4.75745 4.80101 4.90659 4.92849 5.02528 5.18175 5.19619 5.31139 5.36448 5.59267 5.94766 6.18580 6.62406 6.85713 7.29660 7.65770 8.56987 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.009465 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.504889 B = 2957.551400 C = 4155.303761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.089 3.911 3 N -0.458 5.458 4 C -0.349 4.349 5 H 0.094 0.906 6 C 0.037 3.963 7 N -0.882 5.882 8 Si 0.927 3.073 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.510 3.490 13 O -0.595 6.595 14 C -0.154 4.154 15 C -0.026 4.026 16 C -0.140 4.140 17 C -0.102 4.102 18 C 0.127 3.873 19 N -0.498 5.498 20 C 0.181 3.819 21 Cl -0.027 7.027 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.283 0.717 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 5.077 3.000 6.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 N -0.177 5.177 4 C -0.476 4.476 5 H 0.112 0.888 6 C -0.169 4.169 7 N -0.518 5.518 8 Si 0.754 3.246 9 H -0.185 1.185 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.299 3.701 13 O -0.480 6.480 14 C -0.160 4.160 15 C -0.052 4.052 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.031 4.031 19 N -0.208 5.208 20 C 0.017 3.983 21 Cl 0.002 6.998 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.504 5.235 3.990 7.043 hybrid contribution 0.332 -1.523 -0.671 1.697 sum 2.836 3.712 3.319 5.731 Atomic orbital electron populations 1.21932 0.94188 1.02949 1.01592 1.21797 0.96478 0.83929 1.01123 1.43761 1.56146 1.12336 1.05461 1.19135 1.45176 0.95454 0.87876 0.88839 1.25684 0.96013 1.01027 0.94178 1.69771 1.42236 1.40836 0.98910 0.86157 0.78844 0.81141 0.78458 1.18497 1.21062 1.19497 1.18069 0.81386 0.86942 0.83684 1.90653 1.56826 1.69264 1.31290 1.20608 1.01663 0.95018 0.98745 1.22307 0.92521 0.96503 0.93913 1.21376 1.00249 0.93227 0.99383 1.20784 0.96562 1.02300 0.96288 1.23385 0.89545 1.01745 0.88401 1.67077 1.15752 1.12473 1.25540 1.21664 0.94222 0.90235 0.92181 1.98375 1.55827 1.87550 1.58068 0.93293 0.92916 0.89334 0.91852 0.90775 0.90690 0.82652 0.88918 0.91733 0.88289 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 10.22 71.98 0.74 -4.84 16 2 C 0.09 3.80 4.77 86.38 0.41 4.21 16 3 N -0.46 -21.70 2.30 -639.01 -1.47 -23.17 16 4 C -0.35 -17.20 7.29 84.10 0.61 -16.59 16 5 H 0.09 4.88 5.98 -2.91 -0.02 4.87 16 6 C 0.04 1.80 5.36 84.95 0.46 2.26 16 7 N -0.88 -44.99 13.95 21.68 0.30 -44.69 16 8 Si 0.93 39.23 24.68 68.60 1.69 40.92 16 9 H -0.26 -10.30 6.72 99.48 0.67 -9.63 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.76 7.03 99.48 0.70 -11.06 16 12 C 0.51 24.36 7.00 86.73 0.61 24.97 16 13 O -0.59 -29.97 14.90 -4.05 -0.06 -30.03 16 14 C -0.15 -6.65 5.36 -19.97 -0.11 -6.76 16 15 C -0.03 -1.00 7.39 22.74 0.17 -0.84 16 16 C -0.14 -4.09 5.89 -19.81 -0.12 -4.21 16 17 C -0.10 -2.11 10.03 71.24 0.71 -1.39 16 18 C 0.13 3.50 10.85 84.71 0.92 4.42 16 19 N -0.50 -17.56 10.33 -185.52 -1.92 -19.48 16 20 C 0.18 7.36 7.30 85.07 0.62 7.98 16 21 Cl -0.03 -1.06 26.98 -2.72 -0.07 -1.14 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.06 2.70 2.50 -2.39 -0.01 2.69 16 26 H 0.07 3.13 7.46 -2.39 -0.02 3.12 16 27 H 0.28 13.45 8.31 -92.71 -0.77 12.67 16 28 H 0.16 6.34 6.10 -2.91 -0.02 6.32 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.53 8.09 -2.38 -0.02 1.51 16 31 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 32 H 0.21 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -60.38 282.63 4.61 -55.77 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.11 Total: 12.61 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.02 Total: 9.20 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.08 Total: -87.33 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.69 Total: 40.92 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.14 kcal Total: -60.38 4.61 -55.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.348 kcal (2) G-P(sol) polarization free energy of solvation -60.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds