Wall clock time and date at job start Mon Mar 30 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00128 * 2 1 4 4 C 1.39328 * 120.50103 * 180.02562 * 3 2 1 5 5 C 1.38975 * 118.26767 * 180.02562 * 4 3 2 6 6 N 1.39095 * 120.47245 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00085 * 185.06793 * 6 5 4 8 8 O 1.21569 * 120.00268 * 354.92115 * 7 6 5 9 9 N 1.34784 * 120.00086 * 174.91511 * 7 6 5 10 10 C 1.46496 * 120.00103 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47442 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99683 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00399 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00146 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00370 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46848 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47483 * 119.99682 * 15 13 11 18 18 H 1.48504 * 109.46919 * 240.00059 * 15 13 11 19 19 N 1.33154 * 119.05356 * 0.25161 * 5 4 3 20 20 C 1.31736 * 120.91495 * 359.48800 * 19 5 4 21 21 N 1.31743 * 121.90916 * 0.52397 * 20 19 5 22 22 H 1.09000 * 109.47420 * 59.99959 * 1 2 3 23 23 H 1.09002 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47237 * 300.00388 * 1 2 3 25 25 H 1.08000 * 120.86419 * 0.03965 * 4 3 2 26 26 H 0.96998 * 120.00000 * 5.06214 * 6 5 4 27 27 H 0.96999 * 119.99599 * 359.72964 * 9 7 6 28 28 H 1.09000 * 109.47290 * 300.00867 * 10 9 7 29 29 H 1.08998 * 109.46866 * 60.00320 * 10 9 7 30 30 H 0.96991 * 120.00358 * 180.02562 * 14 13 11 31 31 H 1.07992 * 119.04765 * 180.27018 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4210 2.2231 -0.0005 5 6 3.6089 3.6001 0.0000 6 7 4.8920 4.1370 0.0001 7 6 5.0650 5.4696 0.1037 8 8 4.1004 6.2095 0.1042 9 7 6.3073 5.9819 0.2070 10 6 6.4954 7.4304 0.3191 11 6 7.9668 7.7398 0.4199 12 1 8.6896 6.9375 0.4026 13 6 8.3902 9.0467 0.5352 14 7 7.5100 10.0237 0.5568 15 14 10.2142 9.4302 0.6594 16 1 10.9904 8.1650 0.6114 17 1 10.6154 10.3008 -0.4747 18 1 10.4869 10.1294 1.9408 19 7 2.5430 4.3982 0.0062 20 6 1.3238 3.8991 0.0016 21 7 1.1030 2.6003 0.0010 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 4.2646 1.5488 -0.0016 26 1 5.6624 3.5523 -0.0744 27 1 7.0767 5.3912 0.2107 28 1 6.0810 7.9199 -0.5622 29 1 5.9852 7.7951 1.2107 30 1 7.8079 10.9432 0.6375 31 1 0.4809 4.5742 0.0023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888953516.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:31:52 Heat of formation + Delta-G solvation = 5.036782 kcal Electronic energy + Delta-G solvation = -17110.833576 eV Core-core repulsion = 14132.301829 eV Total energy + Delta-G solvation = -2978.531746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24245 -40.72366 -36.81864 -36.00424 -34.52179 -33.96823 -32.26087 -29.79835 -29.24317 -26.05330 -25.38778 -24.33146 -22.19540 -20.27687 -19.97519 -18.35047 -17.97445 -17.18971 -16.89363 -16.62383 -16.55997 -16.03525 -15.84317 -15.51392 -14.96655 -14.69525 -14.46412 -14.10638 -14.06059 -13.35084 -12.87468 -12.85672 -12.66834 -12.22012 -12.04693 -11.67588 -11.63978 -11.48041 -11.44486 -10.81932 -10.15353 -10.09787 -9.70691 -8.79718 -8.28621 -6.45103 -0.16058 -0.05770 0.32397 1.18452 1.39310 1.45891 1.47269 1.59803 2.08338 2.38214 2.78231 2.99131 3.06975 3.24643 3.58841 3.84527 4.07410 4.36667 4.37618 4.40965 4.86199 5.00980 5.03381 5.25141 5.42107 5.43983 5.51751 5.70103 5.83115 6.09959 6.65746 6.94200 7.21722 7.27224 7.57622 8.83887 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.062151 B = 0.003164 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.406412 B = 8848.322823 C = 9270.848739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.028 6.028 3 C 0.162 3.838 4 C -0.239 4.239 5 C 0.421 3.579 6 N -0.647 5.647 7 C 0.682 3.318 8 O -0.582 6.582 9 N -0.712 5.712 10 C 0.285 3.715 11 C -0.553 4.553 12 H 0.087 0.913 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.560 5.560 20 C 0.333 3.667 21 N -0.554 5.554 22 H 0.088 0.912 23 H 0.129 0.871 24 H 0.087 0.913 25 H 0.182 0.818 26 H 0.436 0.564 27 H 0.408 0.592 28 H -0.011 1.011 29 H -0.012 1.012 30 H 0.269 0.731 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -23.265 -1.295 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.210 5.790 3 C -0.093 4.093 4 C -0.273 4.273 5 C 0.180 3.820 6 N -0.298 5.298 7 C 0.381 3.619 8 O -0.456 6.456 9 N -0.367 5.367 10 C 0.162 3.838 11 C -0.591 4.591 12 H 0.105 0.895 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.283 5.283 20 C 0.041 3.959 21 N -0.276 5.276 22 H 0.107 0.893 23 H 0.147 0.853 24 H 0.106 0.894 25 H 0.200 0.800 26 H 0.277 0.723 27 H 0.244 0.756 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.078 0.922 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.289 -22.714 -1.258 24.572 hybrid contribution 1.078 1.042 0.037 1.500 sum -8.211 -21.671 -1.221 23.207 Atomic orbital electron populations 1.23577 0.92012 1.07758 1.07001 1.85670 1.10010 0.93647 1.89715 1.23726 0.91234 1.01096 0.93284 1.21866 0.99421 0.93474 1.12516 1.18477 0.85465 0.88967 0.89085 1.42558 1.06581 1.06691 1.73940 1.16372 0.84547 0.82133 0.78861 1.90989 1.40283 1.58571 1.55803 1.45353 1.05376 1.09753 1.76227 1.18481 0.96447 0.74651 0.94177 1.21619 0.91385 0.93780 1.52332 0.89530 1.26060 1.03863 0.95724 0.93972 1.70147 1.36583 1.00473 1.49749 0.85091 0.77539 0.78857 0.77588 1.17489 1.20556 1.20581 1.68501 0.99857 1.40657 1.19283 1.25303 0.93166 0.89671 0.87744 1.68805 1.34020 1.04260 1.20556 0.89342 0.85282 0.89406 0.80040 0.72337 0.75589 0.99293 0.99371 0.92236 0.76573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.68 113.37 1.10 -0.45 16 2 S -0.03 -0.43 22.73 -56.49 -1.28 -1.71 16 3 C 0.16 3.64 7.00 84.75 0.59 4.24 16 4 C -0.24 -5.40 9.81 22.71 0.22 -5.18 16 5 C 0.42 12.86 7.45 132.77 0.99 13.85 16 6 N -0.65 -19.25 5.39 -321.95 -1.74 -20.98 16 7 C 0.68 28.49 8.52 179.05 1.53 30.02 16 8 O -0.58 -30.40 14.65 -3.93 -0.06 -30.46 16 9 N -0.71 -29.78 5.55 -482.32 -2.68 -32.45 16 10 C 0.29 15.57 5.43 85.63 0.46 16.03 16 11 C -0.55 -29.58 9.28 25.60 0.24 -29.34 16 12 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 13 C 0.00 0.19 5.46 84.65 0.46 0.65 16 14 N -0.93 -55.95 13.29 21.44 0.28 -55.66 16 15 Si 0.99 41.83 29.54 68.60 2.03 43.85 16 16 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 N -0.56 -20.11 8.04 -197.63 -1.59 -21.70 16 20 C 0.33 9.47 12.28 180.92 2.22 11.69 16 21 N -0.55 -13.81 9.30 -196.43 -1.83 -15.64 16 22 H 0.09 1.12 8.14 -2.40 -0.02 1.10 16 23 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 26 H 0.44 8.46 8.74 -92.71 -0.81 7.65 16 27 H 0.41 13.50 8.34 -92.71 -0.77 12.73 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.27 15.05 8.31 -92.72 -0.77 14.28 16 31 H 0.22 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -77.04 294.50 0.55 -76.48 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.40 Total: 16.76 kcal Atomic # 6 Polarization: 33.69 SS G_CDS: 7.81 Total: 41.50 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -7.54 Total: -146.43 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.06 Total: -30.46 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.28 Total: -1.71 kcal Total: -77.04 0.55 -76.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888953516.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.521 kcal (2) G-P(sol) polarization free energy of solvation -77.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds