Wall clock time and date at job start Mon Mar 30 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99871 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99738 * 3 2 1 6 6 H 1.48498 * 109.47213 * 150.00045 * 3 2 1 7 7 C 1.38815 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.91430 * 322.54457 * 10 9 7 12 12 C 1.55448 * 111.11836 * 198.55593 * 10 9 7 13 13 C 1.54321 * 102.96961 * 206.45988 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34781 * 125.64203 * 181.03648 * 14 13 12 16 16 O 1.21567 * 119.99468 * 180.02562 * 15 14 13 17 17 C 1.47744 * 120.00443 * 0.02835 * 15 14 13 18 18 C 1.39349 * 124.11800 * 180.02562 * 17 15 14 19 19 N 1.30096 * 112.14704 * 179.97438 * 18 17 15 20 20 S 1.55924 * 108.75258 * 0.02562 * 19 18 17 21 21 N 1.31497 * 124.11523 * 359.69288 * 17 15 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 23 23 H 0.96993 * 120.00247 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00105 * 359.97438 * 9 7 2 25 25 H 1.08998 * 110.70855 * 88.08792 * 12 10 9 26 26 H 1.08997 * 110.70436 * 324.83540 * 12 10 9 27 27 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 28 28 H 1.08997 * 110.01327 * 141.67909 * 13 12 10 29 29 H 1.08006 * 123.92758 * 359.93781 * 18 17 15 30 30 H 1.09002 * 110.36926 * 94.70918 * 22 14 13 31 31 H 1.08995 * 110.36556 * 216.92202 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.6065 -3.2121 0.6199 12 6 5.5825 -2.2686 0.4631 13 6 6.3249 -3.4343 -0.2236 14 7 5.5076 -3.8568 -1.3705 15 6 5.8024 -4.8639 -2.2163 16 8 5.0503 -5.1259 -3.1348 17 6 7.0394 -5.6494 -2.0273 18 6 7.4276 -6.7058 -2.8489 19 7 8.5557 -7.2322 -2.4709 20 16 9.0670 -6.4700 -1.2104 21 7 7.9112 -5.4326 -1.0671 22 6 4.3129 -2.9962 -1.4423 23 1 -0.4850 0.8400 -0.0004 24 1 3.8646 -0.3621 0.0007 25 1 5.6601 -2.3475 1.5475 26 1 5.9668 -1.3092 0.1168 27 1 6.4401 -4.2631 0.4749 28 1 7.3038 -3.1015 -0.5686 29 1 6.8579 -7.0483 -3.7003 30 1 4.4838 -2.1662 -2.1278 31 1 3.4461 -3.5763 -1.7588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967308635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:13 Heat of formation + Delta-G solvation = 29.347086 kcal Electronic energy + Delta-G solvation = -17806.693493 eV Core-core repulsion = 14829.215920 eV Total energy + Delta-G solvation = -2977.477572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22691 -40.52879 -38.70987 -36.12754 -34.69801 -33.49513 -31.44868 -29.68378 -28.35264 -25.92254 -24.29145 -23.17128 -21.84864 -20.66091 -20.38233 -19.75128 -18.24000 -17.67280 -17.09410 -16.81951 -16.24960 -16.07258 -15.48067 -15.33808 -14.75826 -14.38672 -14.03670 -13.90061 -13.51408 -13.22911 -12.97384 -12.63682 -12.50934 -12.28107 -12.24461 -12.15910 -11.89489 -11.82909 -11.55750 -11.27122 -11.02771 -10.25496 -9.75593 -9.37827 -8.02986 -5.39812 -0.65399 0.34370 0.43500 0.64883 1.40039 1.44493 1.51411 1.80781 1.95336 2.49195 3.22351 3.30146 3.47107 3.52948 3.82025 3.96745 4.03498 4.21721 4.35173 4.46142 4.48211 4.72641 4.88813 4.98246 5.06446 5.17144 5.30483 5.39512 5.75815 6.20328 6.35105 6.85378 7.05574 7.77889 7.98453 9.18136 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.045400 B = 0.004102 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.594071 B = 6823.576463 C = 7191.303209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.736 5.736 10 C 0.169 3.831 11 H 0.063 0.937 12 C -0.131 4.131 13 C 0.123 3.877 14 N -0.596 5.596 15 C 0.606 3.394 16 O -0.566 6.566 17 C -0.001 4.001 18 C 0.089 3.911 19 N -0.599 5.599 20 S 0.802 5.198 21 N -0.553 5.553 22 C 0.092 3.908 23 H 0.259 0.741 24 H 0.372 0.628 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.220 0.780 30 H 0.063 0.937 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.304 -11.281 0.359 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.166 1.166 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.379 5.379 10 C 0.059 3.941 11 H 0.081 0.919 12 C -0.169 4.169 13 C 0.000 4.000 14 N -0.328 5.328 15 C 0.391 3.609 16 O -0.445 6.445 17 C -0.173 4.173 18 C -0.102 4.102 19 N -0.441 5.441 20 S 0.844 5.156 21 N -0.406 5.406 22 C -0.034 4.034 23 H 0.068 0.932 24 H 0.206 0.794 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.236 0.764 30 H 0.082 0.918 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 25.441 -11.849 0.982 28.082 hybrid contribution -1.978 1.240 -1.331 2.688 sum 23.463 -10.609 -0.349 25.752 Atomic orbital electron populations 1.69891 1.07372 1.26881 1.59075 1.25548 0.96084 1.01494 1.02060 0.85396 0.79014 0.79223 0.78063 1.20699 1.22355 1.16589 1.19008 0.82472 0.93513 1.42107 0.92668 1.42540 1.02477 1.03361 1.89484 1.21463 0.92571 0.87894 0.92191 0.91902 1.23011 0.92816 0.98795 1.02321 1.22162 0.94060 0.97223 0.86511 1.48327 1.24157 1.31066 1.29207 1.16780 0.83567 0.79204 0.81399 1.90814 1.50957 1.69518 1.33244 1.21993 0.97953 1.01380 0.95935 1.23757 0.91932 0.92606 1.01951 1.72155 1.17104 1.34153 1.20724 1.78741 1.19479 1.04802 1.12618 1.72442 1.10636 1.30612 1.26907 1.23052 0.86232 0.92817 1.01261 0.93238 0.79392 0.87656 0.89646 0.89585 0.89382 0.76363 0.91836 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.52 13.97 21.65 0.30 -62.22 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 3 Si 0.96 43.87 27.74 68.60 1.90 45.77 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 7 C -0.24 -13.37 10.47 84.04 0.88 -12.49 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.74 -32.41 5.08 -315.89 -1.61 -34.02 16 10 C 0.17 6.00 3.70 46.48 0.17 6.18 16 11 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 12 C -0.13 -3.22 6.59 31.88 0.21 -3.01 16 13 C 0.12 2.79 5.49 86.73 0.48 3.27 16 14 N -0.60 -17.94 3.33 -815.33 -2.71 -20.66 16 15 C 0.61 18.73 7.85 86.76 0.68 19.41 16 16 O -0.57 -21.28 17.06 -3.93 -0.07 -21.35 16 17 C 0.00 -0.01 6.71 41.98 0.28 0.27 16 18 C 0.09 1.78 11.22 85.22 0.96 2.74 16 19 N -0.60 -10.56 11.41 -92.44 -1.05 -11.61 16 20 S 0.80 9.85 23.69 -56.49 -1.34 8.51 16 21 N -0.55 -10.31 8.64 -80.58 -0.70 -11.01 16 22 C 0.09 3.33 6.59 86.85 0.57 3.90 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.37 15.30 5.58 -92.70 -0.52 14.78 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 1.98 8.01 -2.39 -0.02 1.96 16 27 H 0.09 1.77 7.58 -2.39 -0.02 1.75 16 28 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 29 H 0.22 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 2.09 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -72.21 281.49 0.02 -72.19 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.59 Total: 17.13 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 4.70 Total: 17.26 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -5.77 Total: -139.52 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.07 Total: -21.35 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.77 kcal Atomic # 16 Polarization: 9.85 SS G_CDS: -1.34 Total: 8.51 kcal Total: -72.21 0.02 -72.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967308635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.539 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds