Wall clock time and date at job start Mon Mar 30 2020 19:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00310 * 2 1 4 4 H 1.48499 * 109.46805 * 270.00450 * 3 2 1 5 5 H 1.48500 * 109.46650 * 30.00282 * 3 2 1 6 6 H 1.48491 * 109.47041 * 150.00210 * 3 2 1 7 7 C 1.38816 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00384 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99526 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99789 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.78116 * 323.20779 * 10 9 7 12 12 C 1.55158 * 110.72033 * 199.97575 * 10 9 7 13 13 C 1.55133 * 101.48662 * 205.96760 * 12 10 9 14 14 N 1.47424 * 104.71905 * 37.29305 * 13 12 10 15 15 C 1.34782 * 125.64385 * 155.82226 * 14 13 12 16 16 O 1.21622 * 119.99656 * 179.69387 * 15 14 13 17 17 C 1.47171 * 120.00184 * 359.68444 * 15 14 13 18 18 C 1.38241 * 128.47609 * 179.97438 * 17 15 14 19 19 N 1.31242 * 111.88701 * 179.73439 * 18 17 15 20 20 N 1.27338 * 120.04069 * 0.26852 * 19 18 17 21 21 S 1.56636 * 109.73949 * 0.02562 * 20 19 18 22 22 C 1.47021 * 108.70643 * 335.55215 * 14 13 12 23 23 H 0.96997 * 119.99638 * 359.97438 * 1 2 3 24 24 H 0.96997 * 120.00284 * 359.97438 * 9 7 2 25 25 H 1.09006 * 111.00234 * 324.20336 * 12 10 9 26 26 H 1.08997 * 111.00615 * 88.01588 * 12 10 9 27 27 H 1.09002 * 110.49451 * 278.44931 * 13 12 10 28 28 H 1.09004 * 110.34066 * 156.05529 * 13 12 10 29 29 H 1.08002 * 124.05835 * 0.02562 * 18 17 15 30 30 H 1.08993 * 109.88035 * 120.70583 * 22 14 13 31 31 H 1.08995 * 109.88267 * 241.71819 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 1 3.5989 -3.2143 0.6078 12 6 5.5680 -2.2648 0.4931 13 6 6.3000 -3.4439 -0.2000 14 7 5.6610 -3.5551 -1.5239 15 6 6.2228 -4.0935 -2.6245 16 8 5.5975 -4.1375 -3.6668 17 6 7.5928 -4.6277 -2.5651 18 6 8.3325 -5.2127 -3.5759 19 7 9.5265 -5.5698 -3.1645 20 7 9.8719 -5.3658 -1.9560 21 16 8.6969 -4.6815 -1.1783 22 6 4.3072 -2.9876 -1.4432 23 1 -0.4849 0.8401 0.0004 24 1 3.8647 -0.3622 -0.0014 25 1 5.9622 -1.3051 0.1588 26 1 5.6278 -2.3528 1.5779 27 1 6.1620 -4.3648 0.3665 28 1 7.3612 -3.2197 -0.3086 29 1 7.9728 -5.3542 -4.5843 30 1 4.2082 -2.1631 -2.1492 31 1 3.5686 -3.7574 -1.6667 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967400069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:15 Heat of formation + Delta-G solvation = 42.975686 kcal Electronic energy + Delta-G solvation = -17758.824531 eV Core-core repulsion = 14781.937939 eV Total energy + Delta-G solvation = -2976.886592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.90951 -41.07125 -38.81758 -36.10728 -33.78090 -33.09984 -31.49347 -29.78257 -28.43835 -25.88955 -24.22454 -23.52852 -21.74487 -20.83957 -20.20176 -19.66078 -18.19823 -17.77295 -17.17961 -16.81473 -16.32892 -15.82521 -15.64091 -15.34854 -14.80125 -14.48138 -14.17063 -13.98772 -13.73273 -13.34762 -13.12489 -12.92973 -12.63132 -12.37364 -12.22419 -11.83474 -11.70120 -11.45937 -11.19742 -11.05790 -11.02815 -10.85326 -9.85964 -9.40185 -8.02081 -5.38271 -1.37683 -0.27859 0.41159 0.85667 1.39694 1.44094 1.50789 1.63800 1.78972 2.49603 2.89904 3.24073 3.33853 3.44652 3.61963 3.65533 3.94879 4.23170 4.28399 4.40732 4.49067 4.55943 4.82792 4.92090 5.06430 5.17286 5.31543 5.78155 6.20328 6.23472 6.56208 6.77223 7.07278 7.80618 7.98412 9.18853 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.040196 B = 0.004348 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.417766 B = 6437.909204 C = 6698.278770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.240 1.240 7 C -0.237 4.237 8 H 0.061 0.939 9 N -0.739 5.739 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.127 4.127 13 C 0.088 3.912 14 N -0.603 5.603 15 C 0.608 3.392 16 O -0.565 6.565 17 C -0.303 4.303 18 C 0.076 3.924 19 N -0.275 5.275 20 N -0.302 5.302 21 S 0.524 5.476 22 C 0.093 3.907 23 H 0.258 0.742 24 H 0.370 0.630 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.226 0.774 30 H 0.050 0.950 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.800 -8.395 1.990 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.164 1.164 7 C -0.367 4.367 8 H 0.079 0.921 9 N -0.381 5.381 10 C 0.058 3.942 11 H 0.097 0.903 12 C -0.165 4.165 13 C -0.036 4.036 14 N -0.336 5.336 15 C 0.394 3.606 16 O -0.445 6.445 17 C -0.444 4.444 18 C -0.092 4.092 19 N -0.138 5.138 20 N -0.282 5.282 21 S 0.660 5.340 22 C -0.032 4.032 23 H 0.066 0.934 24 H 0.204 0.796 25 H 0.101 0.899 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.243 0.757 30 H 0.069 0.931 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.856 -8.812 2.608 23.709 hybrid contribution -1.406 1.165 -1.680 2.481 sum 20.450 -7.647 0.928 21.852 Atomic orbital electron populations 1.69887 1.07313 1.26748 1.59257 1.25515 0.96015 1.01348 1.02325 0.85466 0.79185 0.79671 0.77804 1.21247 1.22519 1.16392 1.19041 0.82502 0.93555 1.41650 0.92107 1.42666 1.02518 1.03575 1.89352 1.21416 0.92979 0.88184 0.91587 0.90260 1.23111 0.92494 0.98071 1.02843 1.22983 0.97228 1.01396 0.81948 1.48413 1.16722 1.57972 1.10491 1.16406 0.83595 0.77828 0.82731 1.90843 1.63784 1.59057 1.30810 1.27801 1.01970 1.13543 1.01075 1.24710 0.87267 0.94335 1.02909 1.70869 1.16836 1.19758 1.06322 1.78489 1.26913 1.17928 1.04885 1.82397 0.97416 1.39118 1.15052 1.22907 0.81499 0.97260 1.01577 0.93350 0.79587 0.89942 0.86041 0.86793 0.88860 0.75736 0.93148 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.11 13.97 21.65 0.30 -60.80 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.95 42.85 27.74 68.60 1.90 44.76 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.24 -9.25 6.52 99.48 0.65 -8.60 16 7 C -0.24 -12.52 10.46 84.03 0.88 -11.64 16 8 H 0.06 3.55 8.06 -2.92 -0.02 3.52 16 9 N -0.74 -30.27 4.98 -317.34 -1.58 -31.85 16 10 C 0.17 5.15 3.59 46.18 0.17 5.32 16 11 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 12 C -0.13 -2.40 6.71 32.07 0.22 -2.18 16 13 C 0.09 1.36 5.77 86.93 0.50 1.86 16 14 N -0.60 -15.17 3.32 -815.52 -2.71 -17.88 16 15 C 0.61 16.71 7.84 86.59 0.68 17.39 16 16 O -0.56 -20.42 17.31 -4.10 -0.07 -20.49 16 17 C -0.30 -6.24 6.66 24.62 0.16 -6.07 16 18 C 0.08 1.52 11.55 84.78 0.98 2.50 16 19 N -0.28 -6.07 11.54 -57.87 -0.67 -6.74 16 20 N -0.30 -6.07 12.51 37.02 0.46 -5.60 16 21 S 0.52 7.28 19.59 -56.49 -1.11 6.17 16 22 C 0.09 3.02 6.62 86.73 0.57 3.59 16 23 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.37 14.39 5.58 -92.71 -0.52 13.87 16 25 H 0.08 1.57 8.00 -2.38 -0.02 1.55 16 26 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 0.99 5.14 -14.03 -0.07 0.92 16 29 H 0.23 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.07 280.12 1.69 -71.38 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.54 Total: 13.21 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.62 Total: 7.85 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.19 Total: -122.88 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.49 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.90 Total: 44.76 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.11 Total: 6.17 kcal Total: -73.07 1.69 -71.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967400069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.355 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds