Wall clock time and date at job start Mon Mar 30 2020 19:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99915 * 2 1 4 4 H 1.48495 * 109.47358 * 274.98317 * 3 2 1 5 5 H 1.48506 * 109.47418 * 34.98521 * 3 2 1 6 6 H 1.48506 * 109.46851 * 154.98253 * 3 2 1 7 7 C 1.38807 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99523 * 186.85884 * 7 2 1 9 9 N 1.36933 * 120.00636 * 6.85877 * 7 2 1 10 10 C 1.47027 * 125.64361 * 353.95412 * 9 7 2 11 11 C 1.54322 * 107.26711 * 181.02428 * 10 9 7 12 12 C 1.55155 * 102.94686 * 22.19452 * 11 10 9 13 13 H 1.09000 * 111.00766 * 206.38766 * 12 11 10 14 14 N 1.46500 * 111.00541 * 82.56950 * 12 11 10 15 15 C 1.34774 * 119.99653 * 155.00458 * 14 12 11 16 16 O 1.21569 * 120.00505 * 359.97438 * 15 14 12 17 17 C 1.47751 * 119.99995 * 180.02562 * 15 14 12 18 18 C 1.39351 * 124.12035 * 179.97438 * 17 15 14 19 19 N 1.30088 * 112.14567 * 179.97438 * 18 17 15 20 20 S 1.55924 * 108.75811 * 0.02562 * 19 18 17 21 21 N 1.31499 * 124.11394 * 359.69950 * 17 15 14 22 22 C 1.47420 * 125.65275 * 173.65045 * 9 7 2 23 23 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.88114 * 300.43524 * 10 9 7 25 25 H 1.08993 * 109.88032 * 61.45169 * 10 9 7 26 26 H 1.08999 * 110.72019 * 140.55507 * 11 10 9 27 27 H 1.09004 * 110.72221 * 263.64867 * 11 10 9 28 28 H 0.96991 * 119.99959 * 334.99996 * 14 12 11 29 29 H 1.08001 * 123.92695 * 359.97438 * 18 17 15 30 30 H 1.09010 * 110.36379 * 274.74529 * 22 9 7 31 31 H 1.09000 * 110.36819 * 37.05888 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0101 -1.2022 0.0005 8 1 3.0844 -1.2054 0.1123 9 7 1.3329 -2.3839 -0.1405 10 6 -0.1293 -2.5346 -0.1751 11 6 -0.4311 -4.0409 -0.3217 12 6 0.8658 -4.7084 0.2071 13 1 1.0077 -5.6934 -0.2377 14 7 0.8546 -4.7924 1.6696 15 6 1.5832 -5.7376 2.2959 16 8 2.2494 -6.5207 1.6472 17 6 1.5715 -5.8227 3.7709 18 6 2.2904 -6.7639 4.5053 19 7 2.1110 -6.6272 5.7865 20 16 1.1363 -5.4352 6.0320 21 7 0.8855 -5.0162 4.5507 22 6 1.9489 -3.7149 -0.2892 23 1 -0.4850 0.8401 -0.0004 24 1 -0.5627 -2.1581 0.7515 25 1 -0.5382 -1.9878 -1.0246 26 1 -1.2875 -4.3239 0.2904 27 1 -0.6032 -4.2999 -1.3664 28 1 0.3229 -4.1678 2.1872 29 1 2.9228 -7.5190 4.0623 30 1 2.1918 -3.9059 -1.3347 31 1 2.8438 -3.7899 0.3286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010316716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:32:21 Heat of formation + Delta-G solvation = 54.030011 kcal Electronic energy + Delta-G solvation = -18057.455034 eV Core-core repulsion = 15081.047793 eV Total energy + Delta-G solvation = -2976.407240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13460 -39.14493 -37.17815 -34.11653 -33.41603 -31.74256 -29.25143 -27.89233 -26.91135 -24.56273 -23.21240 -20.62382 -20.11071 -19.90960 -19.36737 -17.74195 -16.77657 -16.13239 -15.94750 -15.35991 -14.66534 -14.42075 -14.09060 -13.77678 -13.30717 -12.47840 -12.34615 -11.96749 -11.83304 -11.52778 -11.29286 -11.13691 -11.00461 -10.90977 -10.76950 -10.42836 -10.14078 -9.99409 -9.90607 -9.68750 -9.33017 -8.80851 -8.54256 -6.83178 -5.74652 -3.06292 0.33959 1.28640 1.48628 1.51420 3.18713 3.30201 3.39319 3.45017 3.46389 4.41593 4.49153 4.86951 5.03852 5.26090 5.34423 5.40610 5.47724 5.71827 5.80931 6.14425 6.27451 6.33866 6.44022 6.47569 6.64716 6.94166 7.49568 7.57092 7.73522 7.79059 8.23245 8.29204 9.20111 9.80345 10.46209 11.37758 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.005289 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.960125 B = 5292.954070 C = 5949.239118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.153 4.153 12 C 0.125 3.875 13 H 0.095 0.905 14 N -0.679 5.679 15 C 0.601 3.399 16 O -0.534 6.534 17 C 0.018 3.982 18 C 0.088 3.912 19 N -0.582 5.582 20 S 0.709 5.291 21 N -0.539 5.539 22 C 0.125 3.875 23 H 0.252 0.748 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.413 0.587 29 H 0.214 0.786 30 H 0.032 0.968 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -12.106 9.178 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.192 4.192 12 C 0.020 3.980 13 H 0.113 0.887 14 N -0.328 5.328 15 C 0.381 3.619 16 O -0.411 6.411 17 C -0.158 4.158 18 C -0.106 4.106 19 N -0.422 5.422 20 S 0.751 5.249 21 N -0.389 5.389 22 C -0.002 4.002 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.230 0.770 30 H 0.050 0.950 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.083 -11.621 10.526 15.717 hybrid contribution 0.868 0.627 -1.269 1.660 sum -0.215 -10.994 9.257 14.374 Atomic orbital electron populations 1.69964 1.04875 1.25026 1.56976 1.24795 0.95698 0.97601 1.02208 0.86132 0.78686 0.83649 0.77515 1.21599 1.21806 1.20710 1.19046 0.91085 0.82516 1.42829 0.90552 1.44470 1.01428 1.01152 1.86012 1.21202 0.84650 0.88089 1.01163 1.23222 0.95577 0.99697 1.00677 1.22316 0.97919 0.99503 0.78284 0.88717 1.45692 1.46568 1.32390 1.08155 1.16720 0.80348 0.81669 0.83185 1.90801 1.42615 1.42581 1.65081 1.22658 0.99822 0.95554 0.97750 1.23773 1.00175 1.00495 0.86163 1.72255 1.23103 1.24532 1.22336 1.79059 1.26121 1.12336 1.07413 1.72524 1.26349 1.29769 1.10210 1.21990 0.94539 0.86066 0.97583 0.93780 0.93916 0.93330 0.91525 0.90642 0.75138 0.76964 0.95040 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.36 55.49 0.57 -26.04 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 9 N -0.60 -15.08 3.39 -169.93 -0.58 -15.65 16 10 C 0.17 4.02 5.37 -3.06 -0.02 4.01 16 11 C -0.15 -2.67 6.54 -24.90 -0.16 -2.83 16 12 C 0.12 2.19 3.43 -65.66 -0.23 1.97 16 13 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 14 N -0.68 -11.50 5.19 -52.58 -0.27 -11.77 16 15 C 0.60 9.82 7.82 -12.37 -0.10 9.72 16 16 O -0.53 -9.57 16.44 5.30 0.09 -9.49 16 17 C 0.02 0.25 6.81 -83.71 -0.57 -0.32 16 18 C 0.09 1.06 11.22 -17.88 -0.20 0.86 16 19 N -0.58 -6.79 11.41 19.43 0.22 -6.57 16 20 S 0.71 7.23 23.69 -107.50 -2.55 4.68 16 21 N -0.54 -7.31 11.00 23.19 0.26 -7.06 16 22 C 0.13 2.62 6.95 -2.41 -0.02 2.61 16 23 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.04 1.09 7.55 -51.93 -0.39 0.69 16 25 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.41 7.11 8.26 -40.82 -0.34 6.78 16 29 H 0.21 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -31.44 283.74 -7.71 -39.15 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.16 Total: 2.11 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.54 Total: 9.29 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 0.20 Total: -67.09 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -2.55 Total: 4.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.44 -7.71 -39.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010316716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.182 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds