Wall clock time and date at job start Mon Mar 30 2020 19:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38222 * 119.53106 * 2 1 4 4 C 1.38554 * 119.26110 * 179.73373 * 3 2 1 5 5 C 1.39205 * 118.37836 * 0.52732 * 4 3 2 6 6 N 1.39997 * 120.49384 * 179.71593 * 5 4 3 7 7 C 1.34773 * 119.99944 * 325.78522 * 6 5 4 8 8 O 1.21296 * 119.99854 * 4.26051 * 7 6 5 9 9 C 1.50698 * 120.00118 * 184.25701 * 7 6 5 10 10 H 1.08996 * 109.47104 * 59.99991 * 9 7 6 11 11 C 1.53000 * 109.47076 * 299.99969 * 9 7 6 12 12 C 1.50703 * 109.47151 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99974 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99945 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00086 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00000 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.46910 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46983 * 119.99779 * 16 14 12 19 19 H 1.48497 * 109.47237 * 239.99593 * 16 14 12 20 20 C 1.39005 * 119.01328 * 359.73226 * 5 4 3 21 21 Cl 1.73598 * 119.68214 * 179.97438 * 20 5 4 22 22 N 1.31893 * 120.63488 * 0.02562 * 20 5 4 23 23 H 1.09003 * 109.47082 * 269.72608 * 1 2 3 24 24 H 1.08994 * 109.47615 * 29.72894 * 1 2 3 25 25 H 1.09006 * 109.47102 * 149.72971 * 1 2 3 26 26 H 1.08001 * 120.36783 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.81630 * 180.26409 * 4 3 2 28 28 H 0.96993 * 119.99914 * 145.79474 * 6 5 4 29 29 H 1.09003 * 109.47110 * 179.97438 * 11 9 7 30 30 H 1.09004 * 109.47477 * 300.00025 * 11 9 7 31 31 H 1.09007 * 109.46921 * 59.99947 * 11 9 7 32 32 H 0.96996 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2027 0.0000 4 6 3.5738 1.1961 0.0056 5 6 4.2297 -0.0317 -0.0002 6 7 5.6284 -0.0899 -0.0009 7 6 6.3417 0.8494 -0.6531 8 8 5.7760 1.7874 -1.1739 9 6 7.8420 0.7343 -0.7352 10 1 8.1081 -0.1951 -1.2386 11 6 8.4317 0.7365 0.6766 12 6 8.3937 1.9024 -1.5113 13 1 7.7247 2.6528 -1.9060 14 6 9.7524 2.0125 -1.7183 15 7 10.5670 1.0985 -1.2381 16 14 10.4362 3.4600 -2.6810 17 1 9.3201 4.3405 -3.1103 18 1 11.3713 4.2290 -1.8210 19 1 11.1608 2.9610 -3.8773 20 6 3.4751 -1.1991 -0.0057 21 17 4.2751 -2.7397 -0.0136 22 7 2.1572 -1.1475 -0.0059 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3634 0.8923 -0.5096 25 1 -0.3634 -0.8876 -0.5181 26 1 1.6466 2.1370 -0.0004 27 1 4.1314 2.1211 0.0100 28 1 6.0842 -0.8064 0.4679 29 1 9.5169 0.6528 0.6173 30 1 8.1656 1.6660 1.1801 31 1 8.0327 -0.1081 1.2384 32 1 11.5228 1.1761 -1.3835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121182553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:23 Heat of formation + Delta-G solvation = -17.502702 kcal Electronic energy + Delta-G solvation = -17804.815848 eV Core-core repulsion = 14790.970259 eV Total energy + Delta-G solvation = -3013.845589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67473 -38.90545 -36.65239 -34.86661 -33.93558 -32.17754 -31.75994 -30.33190 -27.05510 -25.25163 -23.65290 -23.27643 -21.83494 -19.60262 -17.84950 -16.91679 -16.46179 -16.01825 -15.73165 -14.84906 -14.55916 -14.33037 -13.97850 -13.43338 -13.16811 -12.96646 -12.66291 -12.51517 -12.15174 -11.71472 -11.48271 -11.26685 -11.11615 -10.87998 -10.76919 -10.56923 -10.34926 -10.07367 -9.80069 -9.44928 -9.09226 -8.78726 -8.45236 -8.00867 -6.12569 -4.16913 0.91229 1.22999 1.83856 3.26599 3.29289 3.34467 3.37376 3.46348 3.73629 4.37478 4.39942 4.75452 4.87084 5.06633 5.21160 5.27351 5.46505 5.52185 5.76643 5.89349 6.04184 6.13161 6.38122 6.48944 6.68236 6.76059 6.87511 7.32056 7.60429 7.72713 7.77310 7.95702 8.19274 8.82325 8.92423 9.49184 10.95036 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.004935 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.856848 B = 5672.245375 C = 6353.976329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 C -0.146 4.146 4 C -0.071 4.071 5 C 0.132 3.868 6 N -0.679 5.679 7 C 0.522 3.478 8 O -0.522 6.522 9 C 0.032 3.968 10 H 0.059 0.941 11 C -0.135 4.135 12 C -0.505 4.505 13 H 0.076 0.924 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.140 3.860 21 Cl -0.032 7.032 22 N -0.462 5.462 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.412 0.588 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.013 0.987 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -3.805 5.133 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.030 4.030 3 C -0.167 4.167 4 C -0.100 4.100 5 C 0.031 3.969 6 N -0.326 5.326 7 C 0.314 3.686 8 O -0.395 6.395 9 C 0.011 3.989 10 H 0.077 0.923 11 C -0.193 4.193 12 C -0.543 4.543 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.028 4.028 21 Cl -0.004 7.004 22 N -0.173 5.173 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.160 0.840 27 H 0.180 0.820 28 H 0.250 0.750 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.888 -4.057 4.713 16.135 hybrid contribution 1.256 0.822 -0.256 1.523 sum -13.632 -3.235 4.457 14.703 Atomic orbital electron populations 1.20648 0.88321 1.03462 1.02979 1.21023 0.96798 0.87165 0.97987 1.21973 0.94247 0.99321 1.01148 1.21878 0.94131 0.98055 0.95888 1.18485 0.85665 0.92675 1.00050 1.44189 1.02497 1.31834 1.54051 1.22451 0.92165 0.79694 0.74291 1.90525 1.72412 1.31600 1.45010 1.18944 0.82757 1.00741 0.96444 0.92313 1.21791 1.05453 0.97363 0.94740 1.21129 0.92145 1.07793 1.33263 0.90591 1.24945 0.96833 0.96572 0.95753 1.69866 1.03544 1.34278 1.45610 0.86370 0.78890 0.82270 0.79579 1.19534 1.20963 1.20966 1.21397 0.89740 0.86379 1.05240 1.98390 1.76994 1.28331 1.96687 1.66692 1.07223 1.30313 1.13102 0.90523 0.90578 0.90556 0.83994 0.82014 0.75044 0.88412 0.94701 0.96798 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.01 0.37 -0.48 16 2 C 0.11 1.41 6.78 -82.57 -0.56 0.85 16 3 C -0.15 -1.87 9.73 -39.47 -0.38 -2.26 16 4 C -0.07 -1.13 8.81 -39.11 -0.34 -1.48 16 5 C 0.13 2.21 6.33 -83.48 -0.53 1.68 16 6 N -0.68 -12.01 4.98 -9.73 -0.05 -12.06 16 7 C 0.52 11.31 7.01 -10.99 -0.08 11.24 16 8 O -0.52 -12.50 12.91 5.54 0.07 -12.43 16 9 C 0.03 0.77 2.65 -92.92 -0.25 0.52 16 10 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 11 C -0.14 -2.96 8.86 37.16 0.33 -2.63 16 12 C -0.50 -13.73 8.37 -34.44 -0.29 -14.02 16 13 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.32 11.32 55.43 0.63 -23.70 16 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.14 2.22 7.29 -17.24 -0.13 2.09 16 21 Cl -0.03 -0.46 28.11 -51.86 -1.46 -1.92 16 22 N -0.46 -7.00 10.24 -6.47 -0.07 -7.06 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.16 2.78 6.28 -52.49 -0.33 2.45 16 28 H 0.41 6.46 7.37 -40.82 -0.30 6.16 16 29 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -29.59 290.69 -6.82 -36.42 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.36 Total: 3.18 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.95 Total: -2.96 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.51 Total: -42.82 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.46 Total: -1.92 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.59 -6.82 -36.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121182553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds