Wall clock time and date at job start Mon Mar 30 2020 19:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38222 * 119.53106 * 2 1 4 4 C 1.38554 * 119.26110 * 179.73373 * 3 2 1 5 5 C 1.39205 * 118.37836 * 0.52732 * 4 3 2 6 6 N 1.39997 * 120.49384 * 179.71593 * 5 4 3 7 7 C 1.34773 * 119.99944 * 325.78522 * 6 5 4 8 8 O 1.21296 * 119.99854 * 4.26051 * 7 6 5 9 9 C 1.50698 * 120.00118 * 184.25701 * 7 6 5 10 10 H 1.08996 * 109.47104 * 59.99991 * 9 7 6 11 11 C 1.53000 * 109.47076 * 299.99969 * 9 7 6 12 12 C 1.50703 * 109.47151 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99974 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99945 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00086 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00000 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.46910 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46983 * 119.99779 * 16 14 12 19 19 H 1.48497 * 109.47237 * 239.99593 * 16 14 12 20 20 C 1.39005 * 119.01328 * 359.73226 * 5 4 3 21 21 Cl 1.73598 * 119.68214 * 179.97438 * 20 5 4 22 22 N 1.31893 * 120.63488 * 0.02562 * 20 5 4 23 23 H 1.09003 * 109.47082 * 269.72608 * 1 2 3 24 24 H 1.08994 * 109.47615 * 29.72894 * 1 2 3 25 25 H 1.09006 * 109.47102 * 149.72971 * 1 2 3 26 26 H 1.08001 * 120.36783 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.81630 * 180.26409 * 4 3 2 28 28 H 0.96993 * 119.99914 * 145.79474 * 6 5 4 29 29 H 1.09003 * 109.47110 * 179.97438 * 11 9 7 30 30 H 1.09004 * 109.47477 * 300.00025 * 11 9 7 31 31 H 1.09007 * 109.46921 * 59.99947 * 11 9 7 32 32 H 0.96996 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2027 0.0000 4 6 3.5738 1.1961 0.0056 5 6 4.2297 -0.0317 -0.0002 6 7 5.6284 -0.0899 -0.0009 7 6 6.3417 0.8494 -0.6531 8 8 5.7760 1.7874 -1.1739 9 6 7.8420 0.7343 -0.7352 10 1 8.1081 -0.1951 -1.2386 11 6 8.4317 0.7365 0.6766 12 6 8.3937 1.9024 -1.5113 13 1 7.7247 2.6528 -1.9060 14 6 9.7524 2.0125 -1.7183 15 7 10.5670 1.0985 -1.2381 16 14 10.4362 3.4600 -2.6810 17 1 9.3201 4.3405 -3.1103 18 1 11.3713 4.2290 -1.8210 19 1 11.1608 2.9610 -3.8773 20 6 3.4751 -1.1991 -0.0057 21 17 4.2751 -2.7397 -0.0136 22 7 2.1572 -1.1475 -0.0059 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3634 0.8923 -0.5096 25 1 -0.3634 -0.8876 -0.5181 26 1 1.6466 2.1370 -0.0004 27 1 4.1314 2.1211 0.0100 28 1 6.0842 -0.8064 0.4679 29 1 9.5169 0.6528 0.6173 30 1 8.1656 1.6660 1.1801 31 1 8.0327 -0.1081 1.2384 32 1 11.5228 1.1761 -1.3835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121182553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:23 Heat of formation + Delta-G solvation = -35.988781 kcal Electronic energy + Delta-G solvation = -17805.617465 eV Core-core repulsion = 14790.970259 eV Total energy + Delta-G solvation = -3014.647206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.96187 -40.39364 -37.81009 -36.32464 -35.85525 -33.33187 -33.13990 -31.96314 -28.16998 -27.22102 -24.95363 -24.69700 -23.18712 -21.20050 -19.28307 -18.31185 -18.10671 -17.54131 -17.17244 -16.57157 -15.88446 -15.71159 -15.30059 -15.05810 -14.55862 -14.33113 -13.83802 -13.58138 -13.41662 -13.04248 -12.96378 -12.75738 -12.64768 -12.56441 -12.39244 -12.26239 -12.04770 -11.83097 -11.10286 -11.03922 -10.70196 -10.54972 -10.27785 -9.27505 -8.17239 -6.28200 -0.23932 0.05286 0.67470 1.40232 1.42957 1.55126 1.67353 1.97856 2.44535 2.54543 3.13181 3.36340 3.63820 3.79668 3.87468 4.25059 4.32068 4.67325 4.74400 4.84625 4.86218 4.88148 4.94692 4.98526 5.11401 5.31525 5.43937 5.59941 5.71512 5.87636 6.12428 6.41664 6.62761 6.80125 7.17613 7.41080 8.88894 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.004935 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.856848 B = 5672.245375 C = 6353.976329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.115 3.885 3 C -0.136 4.136 4 C -0.085 4.085 5 C 0.103 3.897 6 N -0.665 5.665 7 C 0.528 3.472 8 O -0.552 6.552 9 C 0.027 3.973 10 H 0.046 0.954 11 C -0.124 4.124 12 C -0.528 4.528 13 H 0.054 0.946 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.277 1.277 20 C 0.136 3.864 21 Cl -0.026 7.026 22 N -0.476 5.476 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.180 0.820 27 H 0.145 0.855 28 H 0.420 0.580 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 -3.702 5.526 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.156 4.156 4 C -0.113 4.113 5 C 0.004 3.996 6 N -0.312 5.312 7 C 0.319 3.681 8 O -0.428 6.428 9 C 0.006 3.994 10 H 0.064 0.936 11 C -0.182 4.182 12 C -0.567 4.567 13 H 0.072 0.928 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.031 4.031 21 Cl 0.003 6.997 22 N -0.189 5.189 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.197 0.803 27 H 0.163 0.837 28 H 0.259 0.741 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.671 -3.996 5.132 17.895 hybrid contribution 1.658 0.754 -0.355 1.856 sum -15.012 -3.242 4.778 16.085 Atomic orbital electron populations 1.20815 0.84963 1.04836 1.04587 1.21827 0.98854 0.86443 0.95264 1.22352 0.92927 1.01068 0.99250 1.21907 0.95660 0.97112 0.96587 1.18594 0.84800 0.93658 1.02580 1.43734 1.03231 1.30907 1.53291 1.21889 0.91494 0.80079 0.74596 1.90505 1.72710 1.33008 1.46609 1.18851 0.84660 0.98865 0.96992 0.93603 1.21610 1.03853 0.98679 0.94022 1.21272 0.92430 1.08622 1.34345 0.92776 1.25584 0.96982 0.98766 0.96492 1.69948 1.03781 1.35230 1.45959 0.85521 0.78038 0.79560 0.78638 1.20204 1.19974 1.20254 1.21437 0.90132 0.86417 1.05120 1.98387 1.76985 1.27713 1.96643 1.66841 1.06692 1.31496 1.13835 0.88583 0.87934 0.90505 0.80309 0.83713 0.74076 0.90683 0.95165 0.93151 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 10.17 71.24 0.72 -0.56 16 2 C 0.12 2.63 6.78 42.55 0.29 2.92 16 3 C -0.14 -3.13 9.73 22.34 0.22 -2.92 16 4 C -0.08 -2.64 8.81 22.58 0.20 -2.44 16 5 C 0.10 3.41 6.33 38.25 0.24 3.66 16 6 N -0.66 -23.57 4.98 -303.09 -1.51 -25.08 16 7 C 0.53 23.33 7.01 87.66 0.61 23.95 16 8 O -0.55 -27.18 12.91 -3.08 -0.04 -27.22 16 9 C 0.03 1.33 2.65 -12.29 -0.03 1.30 16 10 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 11 C -0.12 -5.41 8.86 71.98 0.64 -4.78 16 12 C -0.53 -29.44 8.37 25.60 0.21 -29.23 16 13 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 14 C 0.02 1.16 5.30 84.66 0.45 1.60 16 15 N -0.91 -49.85 11.32 21.45 0.24 -49.61 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 C 0.14 4.17 7.29 84.87 0.62 4.79 16 21 Cl -0.03 -0.72 28.11 -2.72 -0.08 -0.79 16 22 N -0.48 -13.56 10.24 -174.38 -1.79 -15.35 16 23 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 0.89 8.07 -2.39 -0.02 0.87 16 25 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 26 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.15 5.03 6.28 -2.91 -0.02 5.01 16 28 H 0.42 13.04 7.37 -92.71 -0.68 12.36 16 29 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 30 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.78 7.47 -2.38 -0.02 1.76 16 32 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -64.43 290.69 3.51 -60.92 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.48 Total: 13.06 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 4.17 Total: -1.70 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.05 Total: -90.04 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.04 Total: -27.22 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -64.43 3.51 -60.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121182553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.932 kcal (2) G-P(sol) polarization free energy of solvation -64.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds