Wall clock time and date at job start Mon Mar 30 2020 19:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38227 * 119.53547 * 2 1 4 4 C 1.38554 * 119.26598 * 179.73105 * 3 2 1 5 5 C 1.39204 * 118.37351 * 0.52994 * 4 3 2 6 6 N 1.40003 * 120.49369 * 179.71251 * 5 4 3 7 7 C 1.34773 * 119.99949 * 24.59645 * 6 5 4 8 8 O 1.21296 * 119.99854 * 5.59460 * 7 6 5 9 9 C 1.50698 * 120.00118 * 185.59109 * 7 6 5 10 10 H 1.09003 * 109.46978 * 300.00214 * 9 7 6 11 11 C 1.52999 * 109.47177 * 60.00191 * 9 7 6 12 12 C 1.50703 * 109.47151 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99974 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99945 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00086 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00000 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47103 * 89.99424 * 16 14 12 18 18 H 1.48499 * 109.46969 * 209.99585 * 16 14 12 19 19 H 1.48503 * 109.47119 * 329.99858 * 16 14 12 20 20 C 1.39000 * 119.01829 * 359.72801 * 5 4 3 21 21 Cl 1.73596 * 119.68495 * 179.97438 * 20 5 4 22 22 N 1.31892 * 119.53549 * 180.27136 * 2 1 3 23 23 H 1.09006 * 109.46910 * 269.72936 * 1 2 3 24 24 H 1.09000 * 109.46810 * 29.72967 * 1 2 3 25 25 H 1.08997 * 109.47030 * 149.73329 * 1 2 3 26 26 H 1.08000 * 120.36312 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.81379 * 180.26278 * 4 3 2 28 28 H 0.97003 * 120.00090 * 204.60433 * 6 5 4 29 29 H 1.09002 * 109.46807 * 180.02562 * 11 9 7 30 30 H 1.08998 * 109.46850 * 300.00311 * 11 9 7 31 31 H 1.08995 * 109.46849 * 60.00082 * 11 9 7 32 32 H 0.96996 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2026 0.0000 4 6 3.5739 1.1961 0.0057 5 6 4.2297 -0.0317 -0.0001 6 7 5.6285 -0.0901 -0.0008 7 6 6.3462 0.9400 0.4895 8 8 5.7826 1.8720 1.0232 9 6 7.8487 0.9337 0.3747 10 1 8.2491 0.0629 0.8940 11 6 8.2473 0.8751 -1.1013 12 6 8.4053 2.1886 0.9964 13 1 7.7377 2.9180 1.4307 14 6 9.7668 2.4061 1.0097 15 7 10.5797 1.5181 0.4803 16 14 10.4566 3.9620 1.7796 17 1 10.7314 3.7221 3.2191 18 1 11.7174 4.3380 1.0909 19 1 9.4694 5.0626 1.6409 20 6 3.4752 -1.1991 -0.0056 21 17 4.2751 -2.7398 -0.0135 22 7 2.1572 -1.1475 -0.0054 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8924 -0.5096 25 1 -0.3633 -0.8876 -0.5180 26 1 1.6468 2.1370 0.0004 27 1 4.1315 2.1210 0.0101 28 1 6.0812 -0.8718 -0.3543 29 1 9.3341 0.8701 -1.1843 30 1 7.8447 -0.0328 -1.5505 31 1 7.8469 1.7458 -1.6205 32 1 11.5375 1.6709 0.4900 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121182554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:25 Heat of formation + Delta-G solvation = -16.501372 kcal Electronic energy + Delta-G solvation = -17810.015214 eV Core-core repulsion = 14796.213046 eV Total energy + Delta-G solvation = -3013.802168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69861 -38.93607 -36.67205 -34.88476 -33.95852 -32.15825 -31.76795 -30.34156 -27.06691 -25.26279 -23.66845 -23.29346 -21.83116 -19.62440 -17.87455 -16.89231 -16.50339 -15.98358 -15.68171 -14.86124 -14.61845 -14.32554 -14.06828 -13.46686 -13.12715 -12.93879 -12.63508 -12.52123 -12.13700 -11.77427 -11.49427 -11.28651 -11.10348 -10.89206 -10.80468 -10.65498 -10.36199 -10.07755 -9.80901 -9.47236 -9.12028 -8.77669 -8.45981 -7.93971 -6.13530 -4.18119 0.92919 1.24467 1.82997 3.24550 3.28553 3.33345 3.35342 3.44139 3.76283 4.37622 4.39935 4.74604 4.87472 5.06024 5.20224 5.28479 5.48159 5.53676 5.76579 5.88102 6.03244 6.16616 6.38363 6.49090 6.67848 6.74461 6.86899 7.30245 7.58029 7.73007 7.76697 7.94484 8.17214 8.78032 8.90644 9.47990 10.94053 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029650 B = 0.004916 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.115152 B = 5694.316250 C = 6409.255520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.104 3.896 3 C -0.142 4.142 4 C -0.082 4.082 5 C 0.137 3.863 6 N -0.676 5.676 7 C 0.522 3.478 8 O -0.519 6.519 9 C 0.032 3.968 10 H 0.059 0.941 11 C -0.135 4.135 12 C -0.506 4.506 13 H 0.076 0.924 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.902 3.098 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.132 3.868 21 Cl -0.034 7.034 22 N -0.458 5.458 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.413 0.587 29 H 0.098 0.902 30 H 0.014 0.986 31 H 0.034 0.966 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 -4.642 -3.461 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.110 4.110 5 C 0.036 3.964 6 N -0.321 5.321 7 C 0.313 3.687 8 O -0.393 6.393 9 C 0.011 3.989 10 H 0.076 0.924 11 C -0.193 4.193 12 C -0.545 4.545 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.730 3.270 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.035 4.035 21 Cl -0.006 7.006 22 N -0.170 5.170 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.160 0.840 27 H 0.185 0.815 28 H 0.250 0.750 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.792 -4.870 -3.110 15.880 hybrid contribution 1.244 0.835 0.234 1.516 sum -13.547 -4.036 -2.876 14.425 Atomic orbital electron populations 1.20636 0.88352 1.03327 1.03014 1.21004 0.96774 0.87168 0.98576 1.21979 0.94238 0.99294 1.00776 1.21985 0.94218 0.98204 0.96580 1.18535 0.85552 0.92895 0.99401 1.44250 1.02599 1.23108 1.62112 1.22473 0.92310 0.79629 0.74255 1.90499 1.72691 1.34861 1.41225 1.18945 0.82910 1.00823 0.96231 0.92376 1.21780 1.05503 0.97020 0.94976 1.21080 0.91925 1.04069 1.37389 0.90628 1.24943 0.96826 0.97040 0.95253 1.69856 1.03502 1.34961 1.44956 0.86413 0.78253 0.83107 0.79230 1.20580 1.21206 1.19702 1.21243 0.89761 0.86127 1.06387 1.98384 1.76989 1.28450 1.96785 1.66669 1.07151 1.30318 1.12857 0.90566 0.90623 0.90614 0.83996 0.81458 0.74999 0.88397 0.96738 0.94723 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.01 0.37 -0.48 16 2 C 0.10 1.35 6.78 -82.57 -0.56 0.79 16 3 C -0.14 -1.84 9.73 -39.47 -0.38 -2.23 16 4 C -0.08 -1.32 8.83 -39.11 -0.35 -1.66 16 5 C 0.14 2.32 6.45 -83.48 -0.54 1.78 16 6 N -0.68 -11.97 5.05 -9.73 -0.05 -12.02 16 7 C 0.52 11.23 6.97 -10.99 -0.08 11.16 16 8 O -0.52 -12.31 12.66 5.54 0.07 -12.24 16 9 C 0.03 0.76 2.63 -92.92 -0.24 0.51 16 10 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 11 C -0.13 -2.94 8.87 37.16 0.33 -2.61 16 12 C -0.51 -13.68 8.38 -34.44 -0.29 -13.97 16 13 H 0.08 2.14 6.75 -52.49 -0.35 1.79 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -24.22 11.32 55.43 0.63 -23.60 16 16 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.13 2.10 7.29 -17.24 -0.13 1.97 16 21 Cl -0.03 -0.49 27.95 -51.86 -1.45 -1.94 16 22 N -0.46 -6.96 10.25 -6.47 -0.07 -7.03 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.17 2.95 5.89 -52.49 -0.31 2.65 16 28 H 0.41 6.50 7.37 -40.82 -0.30 6.20 16 29 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.01 0.25 7.70 -51.93 -0.40 -0.15 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -29.25 290.28 -6.82 -36.08 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.35 Total: 3.52 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.96 Total: -3.22 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.51 Total: -42.64 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.45 Total: -1.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.25 -6.82 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121182554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.575 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds