Wall clock time and date at job start Mon Mar 30 2020 19:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38227 * 119.53547 * 2 1 4 4 C 1.38554 * 119.26598 * 179.73105 * 3 2 1 5 5 C 1.39204 * 118.37351 * 0.52994 * 4 3 2 6 6 N 1.40003 * 120.49369 * 179.71251 * 5 4 3 7 7 C 1.34773 * 119.99949 * 24.59645 * 6 5 4 8 8 O 1.21296 * 119.99854 * 5.59460 * 7 6 5 9 9 C 1.50698 * 120.00118 * 185.59109 * 7 6 5 10 10 H 1.09003 * 109.46978 * 300.00214 * 9 7 6 11 11 C 1.52999 * 109.47177 * 60.00191 * 9 7 6 12 12 C 1.50703 * 109.47151 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99974 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99945 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00086 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00000 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47103 * 89.99424 * 16 14 12 18 18 H 1.48499 * 109.46969 * 209.99585 * 16 14 12 19 19 H 1.48503 * 109.47119 * 329.99858 * 16 14 12 20 20 C 1.39000 * 119.01829 * 359.72801 * 5 4 3 21 21 Cl 1.73596 * 119.68495 * 179.97438 * 20 5 4 22 22 N 1.31892 * 119.53549 * 180.27136 * 2 1 3 23 23 H 1.09006 * 109.46910 * 269.72936 * 1 2 3 24 24 H 1.09000 * 109.46810 * 29.72967 * 1 2 3 25 25 H 1.08997 * 109.47030 * 149.73329 * 1 2 3 26 26 H 1.08000 * 120.36312 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.81379 * 180.26278 * 4 3 2 28 28 H 0.97003 * 120.00090 * 204.60433 * 6 5 4 29 29 H 1.09002 * 109.46807 * 180.02562 * 11 9 7 30 30 H 1.08998 * 109.46850 * 300.00311 * 11 9 7 31 31 H 1.08995 * 109.46849 * 60.00082 * 11 9 7 32 32 H 0.96996 * 120.00161 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2026 0.0000 4 6 3.5739 1.1961 0.0057 5 6 4.2297 -0.0317 -0.0001 6 7 5.6285 -0.0901 -0.0008 7 6 6.3462 0.9400 0.4895 8 8 5.7826 1.8720 1.0232 9 6 7.8487 0.9337 0.3747 10 1 8.2491 0.0629 0.8940 11 6 8.2473 0.8751 -1.1013 12 6 8.4053 2.1886 0.9964 13 1 7.7377 2.9180 1.4307 14 6 9.7668 2.4061 1.0097 15 7 10.5797 1.5181 0.4803 16 14 10.4566 3.9620 1.7796 17 1 10.7314 3.7221 3.2191 18 1 11.7174 4.3380 1.0909 19 1 9.4694 5.0626 1.6409 20 6 3.4752 -1.1991 -0.0056 21 17 4.2751 -2.7398 -0.0135 22 7 2.1572 -1.1475 -0.0054 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8924 -0.5096 25 1 -0.3633 -0.8876 -0.5180 26 1 1.6468 2.1370 0.0004 27 1 4.1315 2.1210 0.0101 28 1 6.0812 -0.8718 -0.3543 29 1 9.3341 0.8701 -1.1843 30 1 7.8447 -0.0328 -1.5505 31 1 7.8469 1.7458 -1.6205 32 1 11.5375 1.6709 0.4900 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121182554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:25 Heat of formation + Delta-G solvation = -34.647290 kcal Electronic energy + Delta-G solvation = -17810.802080 eV Core-core repulsion = 14796.213046 eV Total energy + Delta-G solvation = -3014.589034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99852 -40.40776 -37.82463 -36.34004 -35.86837 -33.32846 -33.13967 -31.97077 -28.18471 -27.22763 -24.95718 -24.73184 -23.18768 -21.21019 -19.30841 -18.31340 -18.08378 -17.56630 -17.13809 -16.51535 -16.01227 -15.73350 -15.28687 -15.08226 -14.55972 -14.25803 -13.86457 -13.60461 -13.43574 -13.03281 -12.94601 -12.77054 -12.67215 -12.59483 -12.40238 -12.26401 -12.03347 -11.91229 -11.12093 -11.07086 -10.69233 -10.55292 -10.26081 -9.21103 -8.17264 -6.28331 -0.23196 0.05421 0.66735 1.41904 1.43266 1.53973 1.66578 1.94486 2.44498 2.56233 3.13358 3.36538 3.60415 3.79422 3.86915 4.24487 4.31979 4.66597 4.73624 4.84995 4.86368 4.87788 4.94553 4.98450 5.11857 5.30674 5.43086 5.60146 5.70562 5.86514 6.11784 6.39549 6.63430 6.79628 7.14264 7.40786 8.88773 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029650 B = 0.004916 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.115152 B = 5694.316250 C = 6409.255520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.111 3.889 3 C -0.132 4.132 4 C -0.096 4.096 5 C 0.109 3.891 6 N -0.663 5.663 7 C 0.528 3.472 8 O -0.548 6.548 9 C 0.027 3.973 10 H 0.047 0.953 11 C -0.123 4.123 12 C -0.529 4.529 13 H 0.055 0.945 14 C 0.022 3.978 15 N -0.910 5.910 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.129 3.871 21 Cl -0.025 7.025 22 N -0.473 5.473 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.179 0.821 27 H 0.149 0.851 28 H 0.421 0.579 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -4.634 -3.748 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.152 4.152 4 C -0.124 4.124 5 C 0.009 3.991 6 N -0.308 5.308 7 C 0.319 3.681 8 O -0.424 6.424 9 C 0.006 3.994 10 H 0.065 0.935 11 C -0.181 4.181 12 C -0.568 4.568 13 H 0.073 0.927 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.037 4.037 21 Cl 0.003 6.997 22 N -0.185 5.185 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.097 0.903 26 H 0.196 0.804 27 H 0.166 0.834 28 H 0.259 0.741 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.632 -4.904 -3.416 17.673 hybrid contribution 1.664 0.788 0.311 1.867 sum -14.968 -4.115 -3.105 15.831 Atomic orbital electron populations 1.20803 0.84990 1.04972 1.04365 1.21805 0.98831 0.86436 0.95814 1.22351 0.92894 1.01053 0.98925 1.21987 0.95759 0.97253 0.97406 1.18637 0.84721 0.93853 1.01877 1.43806 1.03299 1.22196 1.61512 1.21908 0.91627 0.80149 0.74442 1.90484 1.72956 1.36216 1.42787 1.18857 0.84660 0.98967 0.96918 0.93525 1.21598 1.03980 0.98502 0.93990 1.21239 0.92235 1.05105 1.38187 0.92679 1.25583 0.96995 0.99598 0.95618 1.69940 1.03701 1.36017 1.45246 0.85570 0.77693 0.79879 0.78603 1.20190 1.20155 1.20051 1.21297 0.90121 0.86233 1.06098 1.98382 1.76933 1.27666 1.96720 1.66827 1.06641 1.31453 1.13573 0.89132 0.87740 0.90292 0.80380 0.83382 0.74071 0.90631 0.93266 0.95256 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.17 71.24 0.72 -0.56 16 2 C 0.11 2.55 6.78 42.55 0.29 2.84 16 3 C -0.13 -3.10 9.73 22.34 0.22 -2.88 16 4 C -0.10 -3.04 8.83 22.58 0.20 -2.84 16 5 C 0.11 3.63 6.45 38.25 0.25 3.88 16 6 N -0.66 -23.54 5.05 -303.09 -1.53 -25.07 16 7 C 0.53 23.18 6.97 87.66 0.61 23.79 16 8 O -0.55 -26.75 12.66 -3.08 -0.04 -26.79 16 9 C 0.03 1.31 2.63 -12.29 -0.03 1.28 16 10 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 11 C -0.12 -5.39 8.87 71.98 0.64 -4.75 16 12 C -0.53 -29.31 8.38 25.60 0.21 -29.09 16 13 H 0.05 3.22 6.75 -2.91 -0.02 3.20 16 14 C 0.02 1.17 5.30 84.66 0.45 1.62 16 15 N -0.91 -49.68 11.32 21.45 0.24 -49.43 16 16 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 C 0.13 3.96 7.29 84.87 0.62 4.57 16 21 Cl -0.03 -0.69 27.95 -2.72 -0.08 -0.77 16 22 N -0.47 -13.45 10.25 -174.37 -1.79 -15.24 16 23 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.15 5.32 5.89 -2.91 -0.02 5.30 16 28 H 0.42 13.14 7.37 -92.71 -0.68 12.46 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -63.57 290.28 3.49 -60.08 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.48 Total: 13.82 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.18 Total: -2.15 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.07 Total: -89.74 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.04 Total: -26.79 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -63.57 3.49 -60.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121182554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.431 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds