Wall clock time and date at job start Mon Mar 30 2020 19:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47363 * 2 1 4 4 C 1.50698 * 109.47359 * 120.00912 * 2 1 3 5 5 H 1.07994 * 120.00585 * 119.99751 * 4 2 1 6 6 C 1.37883 * 119.99558 * 300.26899 * 4 2 1 7 7 N 1.31518 * 119.99820 * 359.72483 * 6 4 2 8 8 Si 1.86795 * 119.99936 * 179.72606 * 6 4 2 9 9 H 1.48496 * 109.47208 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47021 * 120.00114 * 8 6 4 11 11 H 1.48502 * 109.47357 * 239.99888 * 8 6 4 12 12 N 1.46504 * 109.46629 * 240.00384 * 2 1 3 13 13 C 1.34773 * 120.00212 * 85.00159 * 12 2 1 14 14 S 1.71199 * 119.99982 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00156 * 180.02562 * 13 12 2 16 16 C 1.39898 * 120.00047 * 175.77222 * 15 13 12 17 17 C 1.38917 * 120.05316 * 225.20404 * 16 15 13 18 18 C 1.38097 * 119.97289 * 179.72507 * 17 16 15 19 19 C 1.38268 * 120.09720 * 0.57131 * 18 17 16 20 20 C 1.38489 * 120.11615 * 359.70416 * 19 18 17 21 21 F 1.35101 * 119.98881 * 180.02562 * 20 19 18 22 22 C 1.38344 * 120.02176 * 359.97438 * 20 19 18 23 23 H 1.09002 * 109.47363 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46716 * 299.99903 * 1 2 3 25 25 H 1.08997 * 109.47032 * 59.99271 * 1 2 3 26 26 H 0.97005 * 119.99687 * 180.02562 * 7 6 4 27 27 H 0.97002 * 119.99885 * 265.00105 * 12 2 1 28 28 H 0.97004 * 120.00218 * 355.76506 * 15 13 12 29 29 H 1.07997 * 120.01376 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.95375 * 180.29753 * 18 17 16 31 31 H 1.08000 * 119.94159 * 179.72384 * 19 18 17 32 32 H 1.08001 * 120.04939 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6947 -0.2429 2.4827 7 7 0.9387 0.8265 2.6034 8 14 2.3111 -1.1281 4.0077 9 1 3.1375 -2.2937 3.6035 10 1 3.1334 -0.1974 4.8218 11 1 1.1528 -1.5965 4.8104 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 16 1.7393 1.6428 -2.4341 15 7 2.5956 -0.6536 -3.4578 16 6 2.6455 0.0200 -4.6829 17 6 2.1843 -0.6002 -5.8372 18 6 2.2292 0.0684 -7.0447 19 6 2.7435 1.3503 -7.1088 20 6 3.2096 1.9702 -5.9614 21 9 3.7110 3.2229 -6.0269 22 6 3.1608 1.3074 -4.7480 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7014 1.1557 3.4845 27 1 2.2489 -1.6318 -1.1528 28 1 2.8840 -1.5780 -3.4005 29 1 1.7872 -1.6034 -5.7896 30 1 1.8661 -0.4123 -7.9411 31 1 2.7814 1.8692 -8.0552 32 1 3.5238 1.7905 -3.8529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197665369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:13 Heat of formation + Delta-G solvation = 0.203511 kcal Electronic energy + Delta-G solvation = -17485.820167 eV Core-core repulsion = 14487.158873 eV Total energy + Delta-G solvation = -2998.661294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.67287 -39.87293 -37.84875 -35.41022 -32.88454 -30.59772 -30.09539 -28.46693 -25.49312 -24.16886 -22.66039 -22.21012 -21.02158 -18.50646 -18.33632 -16.41718 -16.23211 -16.10777 -15.84977 -15.36252 -14.99665 -14.89911 -14.14751 -13.80788 -13.54435 -12.97138 -12.70232 -12.43998 -11.97320 -11.71995 -11.36769 -11.17913 -11.06399 -10.87020 -10.63793 -10.42066 -10.36129 -9.47545 -9.21246 -8.82138 -8.63121 -8.18552 -7.23078 -6.49133 -6.25685 -4.37721 1.03003 1.31859 1.97453 2.42682 2.99158 3.15613 3.23920 3.25521 3.64466 4.01950 4.27349 4.42709 4.80641 5.02292 5.06776 5.08353 5.34935 5.55467 5.96880 6.10428 6.21409 6.32182 6.46548 6.55000 6.78423 6.90476 6.95353 7.04300 7.33341 7.44132 7.50709 7.75181 7.99639 8.15779 8.63949 9.28624 10.79469 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.004329 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.782824 B = 6466.264063 C = 6716.978932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.084 0.916 4 C -0.547 4.547 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.873 5.873 8 Si 0.905 3.095 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.637 5.637 13 C 0.549 3.451 14 S -0.639 6.639 15 N -0.653 5.653 16 C 0.169 3.831 17 C -0.141 4.141 18 C -0.092 4.092 19 C -0.157 4.157 20 C 0.101 3.899 21 F -0.139 7.139 22 C -0.104 4.104 23 H 0.022 0.978 24 H 0.097 0.903 25 H 0.031 0.969 26 H 0.267 0.733 27 H 0.390 0.610 28 H 0.404 0.596 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -5.760 -15.578 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.102 0.898 4 C -0.586 4.586 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.509 5.509 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.257 5.257 13 C 0.188 3.812 14 S -0.508 6.508 15 N -0.282 5.282 16 C 0.075 3.925 17 C -0.162 4.162 18 C -0.112 4.112 19 C -0.177 4.177 20 C 0.079 3.921 21 F -0.117 7.117 22 C -0.128 4.128 23 H 0.041 0.959 24 H 0.116 0.884 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.225 0.775 28 H 0.242 0.758 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.151 -4.390 -15.192 16.125 hybrid contribution 0.680 -2.024 1.019 2.366 sum 3.831 -6.414 -14.173 16.022 Atomic orbital electron populations 1.22058 0.96907 0.99104 1.02459 1.19532 0.92181 0.95441 0.77144 0.89831 1.21130 1.33558 1.13786 0.90100 0.92116 1.24838 0.94566 0.94889 0.98989 1.69916 1.34904 1.21938 1.24167 0.86344 0.78643 0.79463 0.82362 1.19826 1.20626 1.20698 1.46225 1.57776 1.12906 1.08820 1.22418 0.81533 0.95453 0.81795 1.93245 1.72194 0.94281 1.91103 1.42142 1.64951 1.15154 1.05959 1.17014 0.98938 0.92946 0.83634 1.20950 1.01938 1.01324 0.91976 1.20617 0.99414 0.93837 0.97325 1.21107 1.02473 0.96462 0.97662 1.17386 0.99913 0.80851 0.93911 1.91494 1.85126 1.38028 1.97082 1.21626 0.98697 0.94624 0.97882 0.95859 0.88419 0.94987 0.92279 0.77527 0.75791 0.85484 0.84956 0.85027 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.21 37.16 0.34 -3.14 16 2 C 0.26 6.11 2.33 -69.08 -0.16 5.95 16 3 H 0.08 2.31 6.82 -51.93 -0.35 1.95 16 4 C -0.55 -13.71 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.87 -23.74 11.31 55.43 0.63 -23.12 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.64 -11.99 5.07 -56.65 -0.29 -12.28 16 13 C 0.55 10.07 7.81 -86.93 -0.68 9.39 16 14 S -0.64 -14.47 23.65 -107.50 -2.54 -17.01 16 15 N -0.65 -8.94 5.32 -11.41 -0.06 -9.00 16 16 C 0.17 2.34 5.93 -83.71 -0.50 1.84 16 17 C -0.14 -1.53 9.97 -39.38 -0.39 -1.92 16 18 C -0.09 -0.91 10.04 -39.62 -0.40 -1.30 16 19 C -0.16 -1.77 10.02 -39.48 -0.40 -2.16 16 20 C 0.10 1.44 7.30 -39.45 -0.29 1.15 16 21 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 22 C -0.10 -1.63 7.85 -39.33 -0.31 -1.93 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.10 2.56 6.06 -51.93 -0.31 2.25 16 25 H 0.03 0.75 7.48 -51.93 -0.39 0.36 16 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.39 6.08 8.56 -40.82 -0.35 5.73 16 28 H 0.40 3.99 8.84 -40.82 -0.36 3.63 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.16 2.94 6.11 -44.65 -0.27 2.67 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -30.21 290.18 -9.32 -39.53 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.27 Total: 9.08 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.17 Total: -4.38 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.28 Total: -44.39 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: -14.47 SS G_CDS: -2.54 Total: -17.01 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.21 -9.32 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197665369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.733 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds