Wall clock time and date at job start Mon Mar 30 2020 19:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99907 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99657 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99368 * 3 2 1 7 7 C 1.38637 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 0.02562 * 7 2 1 9 9 O 1.34924 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.42893 * 117.00075 * 180.02562 * 9 7 2 11 11 C 1.50452 * 109.26494 * 270.50926 * 10 9 7 12 12 C 1.38388 * 119.36194 * 77.66303 * 11 10 9 13 13 C 1.38152 * 120.23466 * 180.02562 * 12 11 10 14 14 C 1.38293 * 120.02977 * 0.04167 * 13 12 11 15 15 C 1.37792 * 119.97264 * 359.87612 * 14 13 12 16 16 C 1.38431 * 120.82113 * 257.63212 * 11 10 9 17 17 O 1.35454 * 120.98681 * 359.97082 * 16 11 10 18 18 C 1.35462 * 120.09076 * 339.51980 * 17 16 11 19 19 C 1.39040 * 119.24548 * 200.52294 * 18 17 16 20 20 C 1.38011 * 120.13047 * 180.02562 * 19 18 17 21 21 C 1.38300 * 119.98980 * 359.97438 * 20 19 18 22 22 C 1.38152 * 120.02558 * 359.94785 * 21 20 19 23 23 C 1.38384 * 120.23769 * 0.05620 * 22 21 20 24 24 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.25916 * 30.00249 * 10 9 7 26 26 H 1.07994 * 119.88199 * 0.02562 * 12 11 10 27 27 H 1.08004 * 119.98378 * 180.02562 * 13 12 11 28 28 H 1.07999 * 120.00765 * 179.97438 * 14 13 12 29 29 H 1.08001 * 119.88189 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.93760 * 0.02562 * 19 18 17 31 31 H 1.08004 * 120.00494 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.98451 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.87972 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 1.4000 5 1 3.5474 1.4400 -0.7000 6 1 1.4474 2.6526 -0.7002 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0011 10 6 4.0068 -2.4739 0.0010 11 6 4.2204 -2.9223 1.4212 12 6 3.1558 -3.4430 2.1358 13 6 3.3315 -3.8597 3.4412 14 6 4.5741 -3.7567 4.0392 15 6 5.6379 -3.2406 3.3317 16 6 5.4655 -2.8203 2.0176 17 8 6.5241 -2.3155 1.3398 18 6 6.5127 -2.2874 -0.0145 19 6 7.7168 -2.1837 -0.7019 20 6 7.7263 -2.1529 -2.0817 21 6 6.5366 -2.2257 -2.7830 22 6 5.3385 -2.3304 -2.1030 23 6 5.3229 -2.3616 -0.7196 24 1 -0.4850 0.8401 -0.0004 25 1 3.3762 -3.1987 -0.5139 26 1 2.1842 -3.5238 1.6713 27 1 2.4979 -4.2658 3.9949 28 1 4.7110 -4.0822 5.0599 29 1 6.6079 -3.1612 3.8001 30 1 8.6464 -2.1272 -0.1552 31 1 8.6628 -2.0719 -2.6136 32 1 6.5441 -2.2011 -3.8627 33 1 4.4108 -2.3866 -2.6530 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:21 Heat of formation + Delta-G solvation = -3.580282 kcal Electronic energy + Delta-G solvation = -19858.883384 eV Core-core repulsion = 16815.781615 eV Total energy + Delta-G solvation = -3043.101769 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17115 -38.44280 -37.43441 -36.40959 -32.64819 -31.44039 -30.95915 -30.10884 -29.32499 -25.74986 -23.81890 -23.50698 -22.68276 -21.55936 -19.66344 -18.63665 -17.69646 -16.74072 -16.04356 -15.73467 -15.40031 -14.94739 -14.64751 -14.46147 -13.75076 -13.65144 -13.34155 -13.17096 -12.79548 -12.46408 -12.15798 -11.92653 -11.84778 -11.52523 -11.27858 -11.17076 -10.78922 -10.37027 -10.07462 -9.84194 -9.48253 -8.76583 -8.68981 -8.50241 -8.25026 -7.63943 -6.06369 -3.74563 1.32671 1.43322 1.64856 1.83949 3.17144 3.39652 3.43916 3.61370 3.88685 4.04268 4.52996 4.81134 4.90818 5.03408 5.10155 5.20129 5.28472 5.40915 5.43294 5.45575 5.59651 5.72595 5.79286 5.89189 5.93928 6.13301 6.19830 6.29754 6.36459 6.51696 6.62323 6.73191 6.82597 6.88501 6.93686 7.18509 7.80209 7.83171 8.28328 9.33312 9.83075 11.05449 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.009689 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.089639 B = 2889.206179 C = 4325.410831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.050 3.950 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.361 4.361 8 H 0.083 0.917 9 O -0.305 6.305 10 C 0.191 3.809 11 C -0.153 4.153 12 C -0.058 4.058 13 C -0.148 4.148 14 C -0.095 4.095 15 C -0.146 4.146 16 C 0.119 3.881 17 O -0.247 6.247 18 C 0.128 3.872 19 C -0.146 4.146 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.062 4.062 23 C -0.136 4.136 24 H 0.270 0.730 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.926 -7.978 0.933 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.216 1.216 7 C -0.439 4.439 8 H 0.100 0.900 9 O -0.221 6.221 10 C 0.132 3.868 11 C -0.155 4.155 12 C -0.076 4.076 13 C -0.166 4.166 14 C -0.113 4.113 15 C -0.164 4.164 16 C 0.076 3.924 17 O -0.157 6.157 18 C 0.084 3.916 19 C -0.164 4.164 20 C -0.109 4.109 21 C -0.169 4.169 22 C -0.080 4.080 23 C -0.137 4.137 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.061 -7.618 1.030 15.156 hybrid contribution -0.064 0.805 0.068 0.810 sum 12.998 -6.813 1.098 14.716 Atomic orbital electron populations 1.69677 1.05235 1.27310 1.53067 1.24246 0.94773 0.98102 0.97614 0.86251 0.80150 0.82471 0.78386 1.20691 1.18819 1.21572 1.20414 0.78088 0.95175 1.50247 0.89969 1.85480 1.20784 1.23065 1.92744 1.18944 0.90004 0.89189 0.88661 1.20631 0.92761 1.02357 0.99728 1.21028 0.98192 0.94387 0.93984 1.21091 0.97393 1.02695 0.95393 1.20792 0.92395 0.98825 0.99260 1.20364 1.00324 1.03416 0.92309 1.18683 0.85467 0.96248 0.92046 1.83773 1.40741 1.73896 1.17283 1.18742 0.93868 0.98441 0.80547 1.20462 0.95527 1.06398 0.94055 1.20878 0.98351 0.98853 0.92803 1.21069 0.92291 1.03499 0.99995 1.20981 0.98669 0.95720 0.92643 1.19919 0.93820 1.05028 0.94891 0.92020 0.90962 0.84934 0.85806 0.85527 0.85441 0.85195 0.85370 0.85680 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 13.96 55.48 0.77 -26.89 16 2 C 0.05 1.49 5.49 -17.51 -0.10 1.40 16 3 Si 0.90 23.64 28.62 -169.99 -4.86 18.78 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.26 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.36 -10.34 9.80 30.88 0.30 -10.04 16 8 H 0.08 2.39 7.46 -52.49 -0.39 2.00 16 9 O -0.31 -8.14 8.20 -16.49 -0.14 -8.27 16 10 C 0.19 4.19 2.59 -29.27 -0.08 4.11 16 11 C -0.15 -3.16 5.38 -104.62 -0.56 -3.72 16 12 C -0.06 -1.10 9.37 -39.56 -0.37 -1.47 16 13 C -0.15 -2.32 10.04 -39.59 -0.40 -2.72 16 14 C -0.09 -1.35 10.03 -39.72 -0.40 -1.75 16 15 C -0.15 -2.31 9.95 -39.44 -0.39 -2.70 16 16 C 0.12 2.28 6.57 -39.21 -0.26 2.02 16 17 O -0.25 -4.73 9.84 -0.90 -0.01 -4.73 16 18 C 0.13 2.36 6.57 -39.19 -0.26 2.11 16 19 C -0.15 -2.17 9.96 -39.37 -0.39 -2.56 16 20 C -0.09 -1.18 10.04 -39.64 -0.40 -1.58 16 21 C -0.15 -2.09 10.04 -39.59 -0.40 -2.49 16 22 C -0.06 -1.06 9.69 -39.56 -0.38 -1.44 16 23 C -0.14 -2.67 5.41 -104.59 -0.57 -3.23 16 24 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.07 1.53 7.78 -51.93 -0.40 1.12 16 26 H 0.13 2.57 7.53 -52.49 -0.40 2.18 16 27 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 290.39 15.07 4.38 4.38 Total: -1.00 -32.82 290.39 -7.79 -40.61 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.29 Total: 0.21 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -4.64 Total: -24.07 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.14 Total: -13.01 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.86 Total: 18.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.82 -7.79 -40.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.028 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds