Wall clock time and date at job start Mon Mar 30 2020 19:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00286 * 2 1 4 4 H 1.48496 * 109.47218 * 240.00197 * 3 2 1 5 5 H 1.48504 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47236 * 119.99628 * 3 2 1 7 7 C 1.37877 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99780 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.47961 * 110.99965 * 170.00349 * 10 9 7 12 12 C 1.53933 * 86.18034 * 222.41603 * 11 10 9 13 13 O 1.42901 * 113.73381 * 138.07846 * 12 11 10 14 14 C 1.35911 * 116.99523 * 157.69612 * 13 12 11 15 15 C 1.38762 * 120.46352 * 185.55468 * 14 13 12 16 16 N 1.31805 * 120.71260 * 180.24904 * 15 14 13 17 17 C 1.31868 * 121.79412 * 0.04967 * 16 15 14 18 18 C 1.38343 * 120.86395 * 359.95125 * 17 16 15 19 19 Cl 1.73599 * 120.39568 * 179.97438 * 18 17 16 20 20 C 1.38678 * 119.20276 * 0.02562 * 18 17 16 21 21 C 1.47957 * 110.99995 * 70.64369 * 10 9 7 22 22 H 0.97002 * 119.99298 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46880 * 60.00613 * 9 7 2 24 24 H 1.09001 * 109.47145 * 300.00427 * 9 7 2 25 25 H 1.09002 * 113.75823 * 108.10164 * 11 10 9 26 26 H 1.08997 * 113.75780 * 336.73340 * 11 10 9 27 27 H 1.09001 * 113.73279 * 269.26213 * 12 11 10 28 28 H 1.08002 * 119.64399 * 0.27427 * 15 14 13 29 29 H 1.08001 * 119.56566 * 179.97438 * 17 16 15 30 30 H 1.07996 * 120.82521 * 180.02562 * 20 18 17 31 31 H 1.08991 * 113.76057 * 23.26113 * 21 10 9 32 32 H 1.09001 * 113.75710 * 251.90089 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5162 -4.9027 0.2393 12 6 2.6927 -5.2413 1.1724 13 8 2.2968 -5.8747 2.3906 14 6 3.2386 -6.6104 3.0378 15 6 2.9032 -7.3490 4.1636 16 7 3.8136 -8.0604 4.7979 17 6 5.0688 -8.1000 4.3955 18 6 5.4797 -7.3901 3.2814 19 17 7.1353 -7.4505 2.7629 20 6 4.5533 -6.6290 2.5845 21 6 2.8981 -3.7212 1.3027 22 1 -0.4849 0.8401 -0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6246 -2.5570 0.8896 25 1 1.4576 -5.5405 -0.6427 26 1 0.5617 -4.8001 0.7555 27 1 3.5143 -5.7554 0.6736 28 1 1.8850 -7.3413 4.5237 29 1 5.7853 -8.6946 4.9427 30 1 4.8454 -6.0650 1.7111 31 1 2.3480 -3.2730 2.1299 32 1 3.9438 -3.4150 1.2704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225290147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:33 Heat of formation + Delta-G solvation = 30.952620 kcal Electronic energy + Delta-G solvation = -17429.228913 eV Core-core repulsion = 14417.484504 eV Total energy + Delta-G solvation = -3011.744409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94848 -39.49280 -37.34651 -36.82147 -32.95653 -32.23689 -30.70111 -29.18682 -25.99109 -25.43060 -24.01692 -23.42450 -21.53866 -19.59941 -18.68602 -17.13336 -17.00863 -16.46286 -15.63262 -15.52178 -15.11044 -14.54852 -14.24397 -14.09656 -13.65201 -13.08090 -12.78929 -12.33702 -12.28769 -12.19195 -12.01361 -11.63152 -11.33844 -10.98098 -10.78322 -10.48001 -10.38953 -10.01410 -9.80453 -9.68303 -9.28416 -8.58417 -8.57680 -8.01139 -6.12663 -4.15523 0.66525 0.92612 1.71333 2.96615 3.28102 3.32427 3.35178 3.41058 4.27352 4.33912 4.40334 4.44326 4.52975 4.64307 4.70321 4.97749 5.10977 5.23713 5.54987 5.57402 5.73074 5.88093 5.93418 6.05350 6.21193 6.24621 6.46541 7.06879 7.15193 7.50321 7.59469 7.74131 7.97025 8.28470 8.90785 9.49490 10.98465 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.003920 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.767078 B = 7141.680328 C = 7652.347726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.472 5.472 11 C 0.009 3.991 12 C 0.037 3.963 13 O -0.291 6.291 14 C 0.108 3.892 15 C 0.072 3.928 16 N -0.432 5.432 17 C 0.062 3.938 18 C -0.045 4.045 19 Cl -0.054 7.054 20 C -0.163 4.163 21 C 0.008 3.992 22 H 0.264 0.736 23 H 0.036 0.964 24 H 0.002 0.998 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.171 0.829 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.080 0.920 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 -15.759 6.500 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.197 5.197 11 C -0.120 4.120 12 C -0.020 4.020 13 O -0.202 6.202 14 C 0.059 3.941 15 C -0.088 4.088 16 N -0.141 5.141 17 C -0.095 4.095 18 C -0.074 4.074 19 Cl -0.025 7.025 20 C -0.190 4.190 21 C -0.121 4.121 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.188 0.812 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.852 -15.942 6.616 19.398 hybrid contribution 0.447 1.543 -0.303 1.635 sum 9.299 -14.399 6.313 18.266 Atomic orbital electron populations 1.69941 1.06095 1.27127 1.50346 1.24982 0.94888 0.99419 0.95083 0.86531 0.79466 0.82545 0.78730 1.20066 1.21205 1.20206 1.21019 0.93401 0.89870 1.51111 0.92002 1.20232 0.90790 0.88289 0.96956 1.68628 1.21552 1.02087 1.27431 1.24177 0.96007 0.94850 0.96919 1.25151 1.00163 0.93718 0.82937 1.86291 1.35973 1.60802 1.37101 1.20196 0.88182 0.92075 0.93687 1.22395 1.00279 0.94227 0.91853 1.67850 1.01137 1.16626 1.28481 1.22620 0.93382 0.99279 0.94231 1.21921 0.87091 1.00698 0.97726 1.98392 1.16513 1.97394 1.90185 1.21755 0.92079 1.02305 1.02815 1.24250 1.01756 0.91507 0.94552 0.92682 0.94584 0.97969 0.89166 0.90476 0.87915 0.81194 0.81794 0.82817 0.90141 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.24 8.84 -34.44 -0.30 -14.54 16 8 H 0.06 1.69 7.80 -52.48 -0.41 1.28 16 9 C 0.16 4.13 4.58 -4.97 -0.02 4.11 16 10 N -0.47 -9.72 6.25 -239.99 -1.50 -11.22 16 11 C 0.01 0.16 7.81 -2.77 -0.02 0.13 16 12 C 0.04 0.54 3.87 -25.80 -0.10 0.44 16 13 O -0.29 -4.15 10.17 -19.46 -0.20 -4.35 16 14 C 0.11 1.36 6.70 -39.08 -0.26 1.10 16 15 C 0.07 0.84 11.14 -17.37 -0.19 0.65 16 16 N -0.43 -5.13 10.35 -13.09 -0.14 -5.26 16 17 C 0.06 0.65 10.98 -17.50 -0.19 0.46 16 18 C -0.05 -0.49 6.34 -39.38 -0.25 -0.74 16 19 Cl -0.05 -0.52 28.99 -51.86 -1.50 -2.03 16 20 C -0.16 -1.91 8.92 -39.11 -0.35 -2.26 16 21 C 0.01 0.15 7.29 -2.77 -0.02 0.13 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.00 0.07 7.69 -51.93 -0.40 -0.33 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 27 H 0.10 1.31 6.05 -51.93 -0.31 1.00 16 28 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.15 1.71 6.06 -52.49 -0.32 1.39 16 31 H 0.08 1.58 7.78 -51.93 -0.40 1.17 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -29.48 293.85 -8.50 -37.98 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.50 Total: -1.41 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.81 Total: -8.98 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.90 Total: -41.95 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.20 Total: -4.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.48 -8.50 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225290147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.935 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds