Wall clock time and date at job start Mon Mar 30 2020 19:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33389 * 125.20134 * 2 1 4 4 C 1.38433 * 114.92022 * 180.26674 * 3 2 1 5 5 C 1.50693 * 122.53989 * 180.02562 * 4 3 2 6 6 O 1.45199 * 109.47224 * 359.97438 * 5 4 3 7 7 C 1.34230 * 117.00425 * 180.02562 * 6 5 4 8 8 O 1.20834 * 119.99675 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00383 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.46906 * 299.99651 * 9 7 6 11 11 C 1.53003 * 109.47405 * 59.99475 * 9 7 6 12 12 C 1.50705 * 109.47392 * 179.97438 * 9 7 6 13 13 H 1.08002 * 119.99721 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99999 * 179.97438 * 12 9 7 15 15 N 1.31507 * 120.00267 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99799 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.46999 * 90.00021 * 16 14 12 18 18 H 1.48496 * 109.47305 * 210.00126 * 16 14 12 19 19 H 1.48507 * 109.47343 * 330.00272 * 16 14 12 20 20 C 1.33388 * 114.91766 * 0.02562 * 4 3 2 21 21 C 1.50706 * 125.19956 * 180.02562 * 20 4 3 22 22 S 1.75879 * 109.59837 * 0.02562 * 20 4 3 23 23 H 1.09004 * 109.47138 * 179.71625 * 1 2 3 24 24 H 1.08999 * 109.47349 * 299.71151 * 1 2 3 25 25 H 1.09001 * 109.47374 * 59.71231 * 1 2 3 26 26 H 1.07998 * 122.54399 * 0.25181 * 3 2 1 27 27 H 1.09000 * 109.47581 * 119.97820 * 5 4 3 28 28 H 1.09003 * 109.46972 * 239.98123 * 5 4 3 29 29 H 1.09000 * 109.46945 * 60.00200 * 11 9 7 30 30 H 1.08995 * 109.47059 * 180.02562 * 11 9 7 31 31 H 1.09000 * 109.47000 * 300.00286 * 11 9 7 32 32 H 0.97001 * 120.00596 * 179.97438 * 15 14 12 33 33 H 1.09004 * 109.46812 * 180.02562 * 21 20 4 34 34 H 1.09006 * 109.46982 * 299.99890 * 21 20 4 35 35 H 1.08994 * 109.46987 * 60.00158 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 -0.0058 5 6 4.6622 1.9482 -0.0062 6 8 3.9872 3.2337 -0.0003 7 6 4.7626 4.3293 -0.0004 8 8 5.9658 4.2179 -0.0048 9 6 4.1327 5.6983 0.0062 10 1 3.5104 5.8162 -0.8809 11 6 3.2694 5.8566 1.2594 12 6 5.2135 6.7486 0.0053 13 1 6.2526 6.4542 0.0010 14 6 4.8757 8.0854 0.0102 15 7 3.6105 8.4439 0.0150 16 14 6.2154 9.3872 0.0098 17 1 6.5662 9.7361 -1.3904 18 1 5.7276 10.5997 0.7148 19 1 7.4176 8.8606 0.7047 20 6 3.9750 -0.4477 -0.0111 21 6 5.3860 -0.9770 -0.0175 22 16 2.5209 -1.4372 -0.0095 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3634 0.5093 0.8925 25 1 -0.3634 0.5183 -0.8874 26 1 1.8669 2.0895 0.0040 27 1 5.2892 1.8630 0.8814 28 1 5.2830 1.8680 -0.8986 29 1 3.8917 5.7388 2.1465 30 1 2.8135 6.8466 1.2639 31 1 2.4877 5.0970 1.2604 32 1 3.3728 9.3844 0.0187 33 1 5.3652 -2.0668 -0.0214 34 1 5.9038 -0.6206 -0.9081 35 1 5.9096 -0.6264 0.8719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329470708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:30 Heat of formation + Delta-G solvation = -74.429269 kcal Electronic energy + Delta-G solvation = -17861.226503 eV Core-core repulsion = 14950.496442 eV Total energy + Delta-G solvation = -2910.730061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73444 -38.31915 -35.55922 -33.88539 -33.31690 -30.67567 -29.66810 -27.61932 -25.20374 -24.40448 -22.88908 -21.57639 -19.79278 -18.29656 -17.13610 -16.44574 -16.07313 -15.83378 -15.47518 -14.74749 -14.35186 -14.01666 -13.47449 -13.39632 -13.19955 -12.99006 -12.71960 -12.57630 -12.25069 -11.73994 -11.55364 -11.45123 -11.26475 -11.04018 -10.84641 -10.74436 -10.66952 -10.34762 -10.14162 -10.05728 -9.12858 -9.04807 -8.45092 -8.41166 -8.28465 -6.10680 -4.16017 0.95417 1.56126 1.90107 2.71102 3.29368 3.31931 3.35916 3.40271 3.56394 4.41714 4.74184 4.80795 5.10688 5.17176 5.22754 5.35218 5.38003 5.45611 5.51589 5.61500 5.70085 5.77217 5.90855 6.01827 6.22457 6.43991 6.57000 6.66809 6.86859 6.88564 7.23049 7.43838 7.74160 7.94394 8.14058 8.84393 8.93665 9.49552 10.96769 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.004072 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.341592 B = 6874.615908 C = 7582.250987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.185 4.185 3 C -0.112 4.112 4 C -0.096 4.096 5 C 0.125 3.875 6 O -0.362 6.362 7 C 0.466 3.534 8 O -0.518 6.518 9 C 0.058 3.942 10 H 0.064 0.936 11 C -0.133 4.133 12 C -0.513 4.513 13 H 0.075 0.925 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.183 4.183 21 C -0.082 4.082 22 S 0.084 5.916 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.151 0.849 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.096 0.904 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -18.035 0.257 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.302 4.302 3 C -0.141 4.141 4 C -0.108 4.108 5 C 0.048 3.952 6 O -0.280 6.280 7 C 0.310 3.690 8 O -0.405 6.405 9 C 0.039 3.961 10 H 0.082 0.918 11 C -0.191 4.191 12 C -0.551 4.551 13 H 0.094 0.906 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.732 3.268 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.300 4.300 21 C -0.141 4.141 22 S 0.348 5.652 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.169 0.831 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.686 -19.513 0.256 20.069 hybrid contribution 1.069 2.107 -0.014 2.363 sum -3.616 -17.406 0.242 17.779 Atomic orbital electron populations 1.20303 0.87783 1.02441 1.03235 1.24382 0.99836 0.95163 1.10817 1.19977 0.91945 1.00083 1.02103 1.18610 0.94964 0.92885 1.04383 1.21198 0.92087 0.79641 1.02227 1.86589 1.42023 1.14358 1.85012 1.25367 0.86477 0.86866 0.70241 1.90499 1.16825 1.87150 1.45994 1.18758 0.96722 0.82527 0.98080 0.91811 1.21728 0.97737 1.03229 0.96376 1.21137 0.93076 0.89554 1.51290 0.90642 1.24930 0.95810 0.98493 0.94731 1.69874 1.15858 1.17006 1.50333 0.86382 0.81750 0.80453 0.78234 1.20526 1.21129 1.19678 1.24028 0.99219 0.95382 1.11384 1.20328 0.89750 1.00769 1.03214 1.83994 0.96281 1.09883 1.74998 0.91792 0.90475 0.90476 0.83101 0.90599 0.90597 0.94996 0.88581 0.95790 0.92699 0.91458 0.90443 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.38 36.00 0.37 -0.36 16 2 C -0.19 -2.28 6.51 -36.01 -0.23 -2.51 16 3 C -0.11 -1.61 9.36 -41.20 -0.39 -2.00 16 4 C -0.10 -1.42 5.80 -106.25 -0.62 -2.04 16 5 C 0.12 2.08 5.32 36.00 0.19 2.27 16 6 O -0.36 -7.25 8.96 -39.26 -0.35 -7.60 16 7 C 0.47 10.97 7.25 36.00 0.26 11.23 16 8 O -0.52 -13.20 15.21 -18.76 -0.29 -13.48 16 9 C 0.06 1.48 2.74 -92.92 -0.25 1.22 16 10 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 11 C -0.13 -3.14 8.90 37.16 0.33 -2.81 16 12 C -0.51 -14.39 8.37 -34.44 -0.29 -14.68 16 13 H 0.08 2.21 6.76 -52.49 -0.35 1.85 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.18 -2.31 6.50 -36.00 -0.23 -2.54 16 21 C -0.08 -0.81 9.79 36.01 0.35 -0.46 16 22 S 0.08 0.95 23.31 -107.50 -2.51 -1.56 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.15 2.28 7.41 -52.49 -0.39 1.89 16 27 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 28 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 31 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -29.86 313.96 -8.25 -38.11 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.84 Total: -1.43 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.60 Total: -11.06 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.63 Total: -24.14 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.64 Total: -21.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.86 -8.25 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329470708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.320 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds