Wall clock time and date at job start Mon Mar 30 2020 19:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 5 5 H 1.08006 * 120.00161 * 119.99863 * 4 2 1 6 6 C 1.37881 * 119.99813 * 299.99895 * 4 2 1 7 7 N 1.31507 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47217 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47434 * 119.99828 * 8 6 4 11 11 H 1.48499 * 109.47073 * 239.99773 * 8 6 4 12 12 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 13 13 C 1.46906 * 110.99573 * 85.00442 * 12 2 1 14 14 C 1.50699 * 109.46990 * 180.02562 * 13 12 2 15 15 C 1.38261 * 119.97155 * 259.72743 * 14 13 12 16 16 C 1.38182 * 120.02310 * 179.72532 * 15 14 13 17 17 C 1.38486 * 119.97398 * 0.54744 * 16 15 14 18 18 F 1.35100 * 120.02355 * 179.74600 * 17 16 15 19 19 C 1.38440 * 119.94826 * 359.72483 * 17 16 15 20 20 C 1.38217 * 119.97248 * 359.97438 * 19 17 16 21 21 N 1.48001 * 119.98782 * 180.02562 * 20 19 17 22 22 O 1.21805 * 120.00146 * 359.97438 * 21 20 19 23 23 O 1.21805 * 120.00464 * 179.97438 * 21 20 19 24 24 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 25 25 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 26 26 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 27 27 H 0.97004 * 120.00261 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00219 * 208.96081 * 12 2 1 29 29 H 1.09002 * 109.46991 * 299.99841 * 13 12 2 30 30 H 1.09000 * 109.47202 * 60.00133 * 13 12 2 31 31 H 1.07993 * 119.98984 * 0.02562 * 15 14 13 32 32 H 1.08005 * 120.01382 * 180.25021 * 16 15 14 33 33 H 1.08000 * 120.01504 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.1470 -2.2864 3.6039 10 1 3.1470 -0.1859 4.8162 11 1 1.1674 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5874 -0.5220 -3.5560 15 6 3.9103 -0.4006 -3.9392 16 6 4.3757 -1.0872 -5.0444 17 6 3.5139 -1.8882 -5.7748 18 9 3.9667 -2.5558 -6.8585 19 6 2.1882 -2.0045 -5.3934 20 6 1.7264 -1.3216 -4.2839 21 7 0.3093 -1.4462 -3.8755 22 8 -0.4499 -2.1500 -4.5173 23 8 -0.0978 -0.8449 -2.8975 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.7094 1.1619 3.4844 28 1 2.9172 -1.1207 -1.0286 29 1 1.0871 0.6162 -2.5525 30 1 2.7590 1.0461 -2.1182 31 1 4.5812 0.2273 -3.3718 32 1 5.4101 -0.9954 -5.3413 33 1 1.5152 -2.6292 -5.9620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:42 Heat of formation + Delta-G solvation = -12.945227 kcal Electronic energy + Delta-G solvation = -20310.185618 eV Core-core repulsion = 16868.201281 eV Total energy + Delta-G solvation = -3441.984337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.35324 -41.92281 -39.44545 -36.49448 -35.68343 -33.03929 -32.16281 -31.18414 -28.27372 -26.60368 -25.28271 -24.38237 -22.87086 -21.83888 -19.80298 -19.22057 -18.37769 -17.20275 -16.99666 -16.68527 -16.60565 -16.01885 -15.58578 -14.89467 -14.44016 -14.17415 -13.83054 -13.60884 -12.95637 -12.64617 -12.24736 -12.13077 -11.95441 -11.19655 -11.08096 -10.90340 -10.77246 -10.68122 -10.39150 -10.17259 -10.04563 -9.91751 -9.86358 -9.14649 -8.76706 -8.47186 -7.35759 -6.02225 -4.08856 -0.13825 0.57664 1.43281 1.60091 2.97103 3.28302 3.36715 3.40068 3.68538 4.15373 4.31377 4.36012 4.42315 4.59526 4.93343 5.28198 5.30520 5.35473 5.41139 5.53177 5.66560 6.00676 6.11360 6.13910 6.73170 6.97646 7.31069 7.33687 7.54331 7.77857 7.90051 8.04084 8.31814 8.35556 8.60578 9.00129 9.56833 11.03717 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004930 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.510366 B = 5678.287345 C = 6260.060916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.672 5.672 13 C 0.077 3.923 14 C -0.012 4.012 15 C -0.089 4.089 16 C -0.104 4.104 17 C 0.092 3.908 18 F -0.128 7.128 19 C -0.098 4.098 20 C 0.000 4.000 21 N 0.024 4.976 22 O -0.199 6.199 23 O -0.081 6.081 24 H 0.076 0.924 25 H 0.015 0.985 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -1.476 -15.687 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.303 5.303 13 C -0.052 4.052 14 C -0.015 4.015 15 C -0.109 4.109 16 C -0.123 4.123 17 C 0.072 3.928 18 F -0.107 7.107 19 C -0.117 4.117 20 C -0.084 4.084 21 N 0.545 4.455 22 O -0.402 6.402 23 O -0.312 6.312 24 H 0.094 0.906 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.579 -1.648 -16.039 17.415 hybrid contribution 0.873 -0.187 0.932 1.291 sum 7.453 -1.835 -15.107 16.945 Atomic orbital electron populations 1.21641 0.96946 0.99735 0.99462 1.19121 0.93292 0.91985 0.84538 0.98095 1.21269 1.31560 1.12500 0.90462 0.92364 1.24888 0.95025 0.94988 0.98947 1.69911 1.36481 1.22805 1.23352 0.86490 0.78620 0.79553 0.82988 1.19891 1.21152 1.20926 1.60800 1.31396 1.32571 1.05556 1.21401 1.02187 0.93434 0.88182 1.20280 0.92409 0.93036 0.95733 1.21091 0.94119 0.99470 0.96171 1.21544 1.00837 0.95122 0.94805 1.17208 0.91761 0.96666 0.87161 1.91556 1.89059 1.78470 1.51567 1.20844 0.95515 0.99350 0.96028 1.20613 0.83347 1.05257 0.99165 1.43411 1.02328 0.99604 1.00129 1.94502 1.52831 1.38172 1.54645 1.94681 1.79970 1.42381 1.14154 0.90556 0.96585 0.94901 0.92964 0.85657 0.87529 0.94459 0.82675 0.83051 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.53 37.16 0.32 -2.66 16 2 C 0.22 5.33 2.60 -68.86 -0.18 5.15 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -13.95 8.59 -34.44 -0.30 -14.24 16 5 H 0.06 1.55 7.62 -52.48 -0.40 1.15 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.67 -13.65 5.54 -109.22 -0.60 -14.26 16 13 C 0.08 1.28 4.63 -4.97 -0.02 1.26 16 14 C -0.01 -0.17 5.39 -104.62 -0.56 -0.73 16 15 C -0.09 -0.90 9.67 -39.59 -0.38 -1.28 16 16 C -0.10 -0.91 10.03 -39.51 -0.40 -1.31 16 17 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 18 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 19 C -0.10 -1.17 9.53 -39.51 -0.38 -1.55 16 20 C 0.00 0.00 6.84 -79.97 -0.55 -0.55 16 21 N 0.02 0.42 4.45 33.95 0.15 0.57 16 22 O -0.20 -3.52 18.45 -29.46 -0.54 -4.06 16 23 O -0.08 -1.59 13.09 -29.46 -0.39 -1.97 16 24 H 0.08 2.07 6.07 -51.93 -0.32 1.75 16 25 H 0.02 0.35 6.50 -51.92 -0.34 0.02 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.33 6.41 8.22 -39.29 -0.32 6.08 16 29 H 0.11 1.91 5.19 -51.93 -0.27 1.64 16 30 H 0.04 0.58 7.91 -51.93 -0.41 0.17 16 31 H 0.16 1.23 8.03 -52.49 -0.42 0.81 16 32 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.16 1.76 7.61 -52.49 -0.40 1.36 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -29.51 288.86 -7.48 -36.99 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.26 Total: 1.62 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.83 Total: -13.61 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.17 Total: -38.07 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.93 Total: -6.04 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.51 -7.48 -36.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.047 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds