Wall clock time and date at job start Mon Mar 30 2020 19:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21296 * 120.00162 * 2 1 4 4 C 1.46865 * 120.00052 * 179.97438 * 2 1 3 5 5 C 1.39743 * 120.25172 * 6.23892 * 4 2 1 6 6 C 1.37932 * 119.96056 * 180.27873 * 5 4 2 7 7 C 1.38635 * 120.49225 * 359.74702 * 6 5 4 8 8 C 1.37966 * 120.52002 * 359.97270 * 7 6 5 9 9 C 1.39482 * 120.01472 * 0.02562 * 8 7 6 10 10 C 1.47669 * 120.24231 * 180.02562 * 9 8 7 11 11 C 1.40547 * 120.80535 * 58.04950 * 10 9 8 12 12 N 1.31554 * 119.08292 * 179.97438 * 11 10 9 13 13 C 1.33664 * 120.84086 * 359.97438 * 12 11 10 14 14 C 1.41084 * 119.11846 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.40208 * 119.99862 * 180.02562 * 14 13 12 17 17 N 1.30616 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00069 * 179.72594 * 16 14 13 19 19 H 1.48502 * 109.47160 * 89.99632 * 18 16 14 20 20 H 1.48498 * 109.47300 * 210.00261 * 18 16 14 21 21 H 1.48503 * 109.46921 * 330.00079 * 18 16 14 22 22 N 1.33655 * 121.75949 * 0.26050 * 13 12 11 23 23 C 1.31557 * 120.84471 * 359.47221 * 22 13 12 24 24 H 1.09002 * 109.47627 * 270.00557 * 1 2 3 25 25 H 1.09002 * 109.47150 * 30.00145 * 1 2 3 26 26 H 1.09001 * 109.47056 * 150.00313 * 1 2 3 27 27 H 1.07999 * 120.01897 * 0.02616 * 5 4 2 28 28 H 1.08001 * 119.75383 * 179.76374 * 6 5 4 29 29 H 1.08009 * 119.73966 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.99410 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.45644 * 0.02562 * 11 10 9 32 32 H 0.96999 * 120.00000 * 179.97438 * 17 16 14 33 33 H 1.07995 * 120.46292 * 180.25368 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5540 -2.4816 -0.1301 6 6 2.2492 -3.6730 -0.1230 7 6 3.6293 -3.6813 0.0078 8 6 4.3285 -2.4985 0.1323 9 6 3.6471 -1.2815 0.1278 10 6 4.3905 -0.0124 0.2601 11 6 5.3976 0.3310 -0.6581 12 7 6.0381 1.4703 -0.5084 13 6 5.7412 2.2959 0.5000 14 6 6.4514 3.5083 0.6265 15 1 7.2231 3.7590 -0.0864 16 6 6.1554 4.3878 1.6776 17 7 5.2225 4.0844 2.5399 18 14 7.1010 5.9896 1.8495 19 1 6.4058 7.0589 1.0890 20 1 7.1746 6.3695 3.2832 21 1 8.4745 5.8136 1.3129 22 7 4.7933 2.0010 1.3949 23 6 4.1070 0.8820 1.3066 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4789 -2.4840 -0.2324 28 1 1.7143 -4.6062 -0.2204 29 1 4.1614 -4.6213 0.0122 30 1 5.4037 -2.5149 0.2333 31 1 5.6417 -0.3310 -1.4759 32 1 5.0180 4.6927 3.2673 33 1 3.3396 0.6518 2.0307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241205310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:26 Heat of formation + Delta-G solvation = 38.292097 kcal Electronic energy + Delta-G solvation = -19385.706239 eV Core-core repulsion = 16376.712944 eV Total energy + Delta-G solvation = -3008.993296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85615 -38.39967 -37.59493 -33.91260 -32.12839 -31.74046 -31.58222 -29.18529 -28.81856 -26.04837 -23.49552 -22.80125 -22.25527 -20.72233 -19.35146 -17.84825 -16.74798 -16.03302 -15.46009 -15.24436 -14.89460 -14.67605 -14.28381 -14.09391 -13.62553 -13.39749 -12.76246 -12.69384 -12.35912 -12.07819 -12.01218 -11.68328 -11.55062 -11.29322 -11.26108 -11.02390 -10.70674 -10.28121 -9.65933 -9.36747 -9.06102 -8.81566 -8.71874 -8.67933 -7.51926 -7.20361 -6.52342 -4.69713 1.01115 1.59336 2.64573 2.83557 3.04829 3.08373 3.11098 3.19251 3.87123 4.13204 4.44067 4.65409 5.01388 5.17582 5.20196 5.33170 5.54795 5.58381 5.70507 5.72951 5.81964 5.95476 6.01615 6.06421 6.24484 6.28722 6.44630 6.57169 6.68909 6.79926 6.97599 7.10593 7.20588 7.36669 7.70032 8.07568 8.15968 8.51532 8.59694 9.16392 10.11570 10.33029 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.005298 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.187973 B = 5284.006812 C = 5871.712935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.376 3.624 3 O -0.421 6.421 4 C -0.183 4.183 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.088 4.088 8 C -0.139 4.139 9 C 0.084 3.916 10 C -0.333 4.333 11 C 0.188 3.812 12 N -0.599 5.599 13 C 0.390 3.610 14 C -0.388 4.388 15 H 0.094 0.906 16 C 0.063 3.937 17 N -0.700 5.700 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.258 1.258 22 N -0.508 5.508 23 C 0.223 3.777 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.276 0.724 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 -10.686 -1.666 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.252 3.748 3 O -0.293 6.293 4 C -0.184 4.184 5 C -0.092 4.092 6 C -0.180 4.180 7 C -0.106 4.106 8 C -0.158 4.158 9 C 0.082 3.918 10 C -0.343 4.343 11 C 0.014 3.986 12 N -0.318 5.318 13 C 0.156 3.844 14 C -0.422 4.422 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.321 5.321 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.182 1.182 22 N -0.224 5.224 23 C 0.046 3.954 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.778 -9.000 -1.341 11.346 hybrid contribution -0.418 -0.478 -0.002 0.635 sum -7.197 -9.478 -1.343 11.976 Atomic orbital electron populations 1.22225 0.94985 1.04047 1.04157 1.22305 0.90953 0.88354 0.73216 1.90734 1.71042 1.33968 1.33599 1.20634 0.94342 0.94578 1.08876 1.21311 0.99334 0.91639 0.96881 1.20953 0.94403 0.97566 1.05066 1.21225 0.94342 0.97843 0.97228 1.21393 1.00201 0.91486 1.02691 1.18966 0.90887 0.93034 0.88922 1.19552 1.08640 0.99012 1.07095 1.22483 0.88962 0.92790 0.94354 1.68608 1.31579 1.05809 1.25764 1.19916 0.88354 0.92235 0.83890 1.19424 1.15241 0.98777 1.08753 0.88831 1.26191 0.95067 1.00294 0.94916 1.70124 1.20709 1.33281 1.07998 0.86126 0.80709 0.80532 0.78337 1.19156 1.19923 1.18217 1.69290 1.09024 1.15889 1.28148 1.22603 0.92576 0.88207 0.92022 0.89074 0.89981 0.90219 0.85786 0.86364 0.86344 0.85824 0.85726 0.91225 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 9.87 36.00 0.36 -1.99 16 2 C 0.38 6.51 6.96 -30.82 -0.21 6.29 16 3 O -0.42 -9.54 13.02 5.54 0.07 -9.47 16 4 C -0.18 -3.03 5.88 -104.73 -0.62 -3.64 16 5 C -0.07 -0.93 9.39 -39.13 -0.37 -1.30 16 6 C -0.16 -1.90 10.02 -39.55 -0.40 -2.30 16 7 C -0.09 -1.12 10.02 -39.53 -0.40 -1.52 16 8 C -0.14 -2.20 9.67 -39.22 -0.38 -2.58 16 9 C 0.08 1.57 5.46 -104.47 -0.57 1.00 16 10 C -0.33 -7.68 4.23 -104.30 -0.44 -8.13 16 11 C 0.19 4.53 10.98 -16.80 -0.18 4.35 16 12 N -0.60 -16.54 10.33 -12.38 -0.13 -16.67 16 13 C 0.39 11.44 7.35 -158.14 -1.16 10.28 16 14 C -0.39 -10.92 9.35 -37.76 -0.35 -11.28 16 15 H 0.09 2.51 7.85 -52.48 -0.41 2.10 16 16 C 0.06 1.64 5.50 -17.33 -0.10 1.54 16 17 N -0.70 -18.87 11.40 55.56 0.63 -18.24 16 18 Si 0.92 18.77 29.56 -169.99 -5.02 13.74 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 N -0.51 -14.70 7.83 -12.38 -0.10 -14.79 16 23 C 0.22 5.71 8.12 -16.80 -0.14 5.58 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.72 6.26 -51.93 -0.33 0.39 16 27 H 0.12 1.17 6.24 -52.49 -0.33 0.85 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.13 2.59 8.06 -52.48 -0.42 2.17 16 32 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 33 H 0.12 2.78 7.81 -52.49 -0.41 2.37 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -33.10 291.26 -8.26 -41.36 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.15 Total: 3.37 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.96 Total: -3.69 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.41 Total: -49.70 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.10 -8.26 -41.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241205310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.648 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds